+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli O55:H7 CB9615 (EPEC)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E G2583_1343 rne; Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] E G2583_3966 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E G2583_3148 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E G2583_5006 rnr; Putative enzyme K12573 rnr; ribonuclease R [EC:3.1.13.1] E G2583_4989 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E G2583_4573 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E G2583_1025 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E G2583_3886 deaD; Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E G2583_4622 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E G2583_3431 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E G2583_3888 pnp; Polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E G2583_4576 rho; Transcription termination factor rho K03628 rho; transcription termination factor Rho E G2583_4720 pfkA; 6-phosphofructokinase isozyme 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E G2583_0014 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK E G2583_4970 groL; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E G2583_4999 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D Others E G2583_3024 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E G2583_0147 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E G2583_3484 nudH; RNA pyrophosphohydrolase ((Di)nucleoside polyphosphate hydrolase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E G2583_3344 csrA; Carbon storage regulator-like protein K03563 csrA; carbon storage regulator E G2583_3971 csrD; Cyclic diguanylate phosphodiesterase (EAL) domain protein K18765 csrD; RNase E specificity factor CsrD E G2583_4736 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A E G2583_5085 rraB; hypothetical protein K09893 rraB; regulator of ribonuclease activity B E G2583_3930 yhbJ; UPF0042 protein yhbJ K06958 rapZ; RNase adapter protein RapZ E G2583_1771 hrpA; HrpA-like helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E G2583_0152 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E G2583_2405 dsrA; dsrA K18502 dsrA; small regulatory RNA DsrA E G2583_0594 sroB; sroB K18503 chiX; small regulatory RNA ChiX E G2583_3935 putative non-coding RNA K18504 arcZ; small regulatory RNA ArcZ E G2583_3087 putative non-coding RNA K15841 glmY; small regulatory RNA GlmY E G2583_4597 putative non-coding RNA K18505 glmZ; small regulatory RNA GlmZ E G2583_0074 putative non-coding RNA K18506 sgrS; small regulatory RNA SgrS E G2583_4143 putative non-coding RNA K18507 ryhB; small regulatory RNA RyhB E G2583_1077 rybB; rybB K18508 rybB; small regulatory RNA RybB E G2583_1780 putative non-coding RNA K18509 rydC; small regulatory RNA RydC E G2583_3335 sraD; sraD K18511 micA; small regulatory RNA MicA E G2583_1753 putative non-coding RNA K18512 micC; small regulatory RNA MicC E G2583_2757 micF; micF K18513 micF; small regulatory RNA MicF E G2583_3445 csrB; csrB K18515 csrB; small regulatory RNA CsrB E G2583_4665 putative non-coding RNA K18516 csrC; small regulatory RNA CsrC E G2583_1535 dicF4; dicF4 K18517 dicF; small regulatory RNA DicF E G2583_2085 rprA; rprA K18518 rprA; small regulatory RNA RprA E G2583_2610 putative non-coding RNA K18520 cyaR; small regulatory RNA CyaR E G2583_3462 gcvB; gcvB K18521 gcvB; small regulatory RNA GcvB E G2583_3492 putative non-coding RNA K18522 omrA; small regulatory RNA OmrA E G2583_3493 putative non-coding RNA K18523 omrB; small regulatory RNA OmrB E G2583_4251 putative non-coding RNA K18525 gadY; small regulatory RNA GadY E G2583_4663 spf; spf K18527 spf; small regulatory RNA Spot 42 E G2583_4773 oxyS; oxyS K18528 oxyS; small regulatory RNA OxyS B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024