+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Escherichia coli O55:H7 CB9615 (EPEC)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E G2583_1343 rne; Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
E G2583_3966 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E G2583_3148 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E G2583_5006 rnr; Putative enzyme K12573 rnr; ribonuclease R [EC:3.1.13.1]
E G2583_4989 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E G2583_4573 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E G2583_1025 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E G2583_3886 deaD; Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E G2583_4622 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E G2583_3431 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E G2583_3888 pnp; Polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E G2583_4576 rho; Transcription termination factor rho K03628 rho; transcription termination factor Rho
E G2583_4720 pfkA; 6-phosphofructokinase isozyme 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E G2583_0014 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
E G2583_4970 groL; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E G2583_4999 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Others
E G2583_3024 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E G2583_0147 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E G2583_3484 nudH; RNA pyrophosphohydrolase ((Di)nucleoside polyphosphate hydrolase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E G2583_3344 csrA; Carbon storage regulator-like protein K03563 csrA; carbon storage regulator
E G2583_3971 csrD; Cyclic diguanylate phosphodiesterase (EAL) domain protein K18765 csrD; RNase E specificity factor CsrD
E G2583_4736 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
E G2583_5085 rraB; hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E G2583_3930 yhbJ; UPF0042 protein yhbJ K06958 rapZ; RNase adapter protein RapZ
E G2583_1771 hrpA; HrpA-like helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E G2583_0152 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E G2583_2405 dsrA; dsrA K18502 dsrA; small regulatory RNA DsrA
E G2583_0594 sroB; sroB K18503 chiX; small regulatory RNA ChiX
E G2583_3935 putative non-coding RNA K18504 arcZ; small regulatory RNA ArcZ
E G2583_3087 putative non-coding RNA K15841 glmY; small regulatory RNA GlmY
E G2583_4597 putative non-coding RNA K18505 glmZ; small regulatory RNA GlmZ
E G2583_0074 putative non-coding RNA K18506 sgrS; small regulatory RNA SgrS
E G2583_4143 putative non-coding RNA K18507 ryhB; small regulatory RNA RyhB
E G2583_1077 rybB; rybB K18508 rybB; small regulatory RNA RybB
E G2583_1780 putative non-coding RNA K18509 rydC; small regulatory RNA RydC
E G2583_3335 sraD; sraD K18511 micA; small regulatory RNA MicA
E G2583_1753 putative non-coding RNA K18512 micC; small regulatory RNA MicC
E G2583_2757 micF; micF K18513 micF; small regulatory RNA MicF
E G2583_3445 csrB; csrB K18515 csrB; small regulatory RNA CsrB
E G2583_4665 putative non-coding RNA K18516 csrC; small regulatory RNA CsrC
E G2583_1535 dicF4; dicF4 K18517 dicF; small regulatory RNA DicF
E G2583_2085 rprA; rprA K18518 rprA; small regulatory RNA RprA
E G2583_2610 putative non-coding RNA K18520 cyaR; small regulatory RNA CyaR
E G2583_3462 gcvB; gcvB K18521 gcvB; small regulatory RNA GcvB
E G2583_3492 putative non-coding RNA K18522 omrA; small regulatory RNA OmrA
E G2583_3493 putative non-coding RNA K18523 omrB; small regulatory RNA OmrB
E G2583_4251 putative non-coding RNA K18525 gadY; small regulatory RNA GadY
E G2583_4663 spf; spf K18527 spf; small regulatory RNA Spot 42
E G2583_4773 oxyS; oxyS K18528 oxyS; small regulatory RNA OxyS
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024