+E Transcription factors KO
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Transcription Factors - Enterococcus raffinosus
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D J9537_18745 effector binding domain-containing protein K13653 K13653; AraC family transcriptional regulator
D J9537_20310 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D J9537_13885 helix-turn-helix transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D J9537_15255 bifunctional transcriptional activator/DNA repair protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D J9537_14280 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D J9537_15910 DeoR/GlpR transcriptional regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D J9537_15940 DeoR/GlpR transcriptional regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D J9537_16020 DeoR/GlpR transcriptional regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D J9537_02875 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D J9537_04640 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D J9537_08450 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D J9537_02385 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D J9537_04085 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D J9537_00290 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_03845 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_05355 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_09590 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_13560 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_19440 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_19585 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D J9537_09080 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D J9537_15435 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D J9537_18335 substrate-binding domain-containing protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D J9537_18600 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D J9537_03850 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D J9537_17720 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D J9537_19995 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D J9537_02560 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D J9537_03135 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D J9537_03675 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D J9537_04395 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D J9537_15955 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D J9537_07025 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J9537_17030 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J9537_17630 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J9537_19210 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J9537_09300 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D J9537_09360 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D J9537_15025 TetR/AcrR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
C Lrp/AsnC family
C LuxR family
C MarR family
C MerR family
D J9537_05780 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D J9537_16170 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D J9537_06525 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D J9537_03960 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D J9537_08260 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D J9537_17505 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D J9537_07085 cyclic nucleotide-binding domain-containing protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D J9537_15465 cyclic nucleotide-binding domain-containing protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
C ArsR family
D J9537_18245 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D J9537_03925 winged helix-turn-helix transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
D J9537_10400 PadR family transcriptional regulator K26741 ladR; PadR family transcriptional regulator, multidrug transcriptional repressor LadR
D J9537_19665 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D J9537_20145 helix-turn-helix transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D J9537_14875 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D J9537_10235 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D J9537_18840 MurR/RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D J9537_15450 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D J9537_14550 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D J9537_01150 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D J9537_02290 sigma 54-interacting transcriptional regulator K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
D J9537_07060 sigma 54-interacting transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D J9537_15555 sigma 54-interacting transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D J9537_03280 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D J9537_05700 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D J9537_06735 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D J9537_18570 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D J9537_05300 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D J9537_05900 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D J9537_13335 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D J9537_13820 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D J9537_12490 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D J9537_16800 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D J9537_17345 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D J9537_17365 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D J9537_17260 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D J9537_02980 PRD domain-containing protein K26932 sacT; sacPA operon transcriptional antiterminator
D J9537_11060 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator
D J9537_00415 transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator
D J9537_16120 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator
D J9537_00215 helix-turn-helix domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D J9537_02025 BglG family transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
D J9537_02600 BglG family transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
D J9537_05630 transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
D J9537_14100 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D J9537_19100 transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator
C Others
D J9537_14710 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D J9537_07300 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D J9537_19015 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D J9537_15930 PRD domain-containing protein K02531 lacT; transcriptional antiterminator
D J9537_09555 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D J9537_10340 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D J9537_06460 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D J9537_06290 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D J9537_14575 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D J9537_03790 PspC domain-containing protein K03973 pspC; phage shock protein C
D J9537_06040 sugar-binding domain-containing protein K05311 cggR; central glycolytic genes regulator
D J9537_07635 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D J9537_08315 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D J9537_10320 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0