+F Repair protein KO #

  DNA Repair and Recombination Proteins - Eremothecium cymbalariae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Ecym_4090 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Ecym_2637 Hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Ecym_7413 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] E Ecym_6193 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F Ecym_5625 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F Ecym_4733 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2 F Ecym_1380 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3 E DNA polymerase epsilon complex F Ecym_1099 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F Ecym_2806 Hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F Ecym_4295 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7] F Ecym_6281 hypothetical protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7] E Ecym_7458 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E Ecym_7411 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors E Ecym_3064 Hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F Ecym_7223 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein F Ecym_3572 Hypothetical protein K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F Ecym_2029 Hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E NER4 complex F Ecym_4751 hypothetical protein K15082 RAD7; DNA repair protein RAD7 F Ecym_3458 Hypothetical protein K15083 RAD16; DNA repair protein RAD16 D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F Ecym_8065 Hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F Ecym_4538 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F Ecym_4382 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F Ecym_5193 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F Ecym_5335 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F Ecym_2818 Hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F Ecym_4540 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F Ecym_8331 Hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F Ecym_2205 Hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F Ecym_8313 Hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F Ecym_6409 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 E Cul4-CSA complex F Ecym_2029 Hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E Other TCR factor F Ecym_1369 hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6 F Ecym_7366 hypothetical protein K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E Ecym_4025 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E Ecym_3517 Hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E Ecym_3216 Hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 E Ecym_3480 Hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E Ecym_5535 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E Ecym_3371 Hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E Ecym_7122 hypothetical protein K06634 CCNH; cyclin H E Ecym_4115 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E Ecym_6168 hypothetical protein K07466 RFA1; replication factor A1 E Ecym_2034 Hypothetical protein K10739 RFA2; replication factor A2 D Other NER factors E Ecym_2122 Hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells E Ecym_8154 Hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1 E Ecym_5112 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5 E Ecym_5405 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19 E Ecym_1442 hypothetical protein K03869 CUL3; cullin 3 E Ecym_2544 Hypothetical protein K03872 ELOC; elongin-C E Ecym_6480 hypothetical protein K15077 ELA1; elongin-A C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Ecym_2796 Hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2 E Ecym_6039 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3 E Ecym_3519 Hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E Ecym_6072 hypothetical protein K10864 PMS1; DNA mismatch repair protein PMS1 E Ecym_3383 Hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1 E Ecym_5379 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2 E Ecym_2384 Hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3 D DNA polymerase delta complex E Ecym_5625 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E Ecym_4733 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2 E Ecym_1380 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3 D RPA (replication factor A) E Ecym_6168 hypothetical protein K07466 RFA1; replication factor A1 E Ecym_2034 Hypothetical protein K10739 RFA2; replication factor A2 D RFC (replication factor C) E Ecym_8322 Hypothetical protein K10754 RFC1; replication factor C subunit 1 E Ecym_2792 Hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4 E Ecym_3150 Hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4 E Ecym_3534 Hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5 E Ecym_7452 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E Ecym_7458 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen E Ecym_1331 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E Ecym_4649 hypothetical protein K24755 WDR76; WD repeat-containing protein 76 B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E Ecym_6250 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E Ecym_1108 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] E Ecym_4761 hypothetical protein K10868 XRS2; DNA repair protein XRS2 D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E Ecym_6250 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E Ecym_1108 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA complex E Ecym_4690 hypothetical protein K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E Ecym_4690 hypothetical protein K04482 RAD51; DNA repair protein RAD51 E Ecym_5546 hypothetical protein K10957 RAD55; DNA repair protein RAD55 E Ecym_5304 hypothetical protein K10958 RAD57; DNA repair protein RAD57 D Rad52 family proteins E Ecym_4110 hypothetical protein K10873 RAD52; DNA repair and recombination protein RAD52 E Ecym_3280 Hypothetical protein K10959 RAD59; DNA repair protein RAD59 D Rad54 family proteins E Ecym_6118 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] E Ecym_2678 Hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-] D RecQ family DNA helicases E Ecym_2138 Hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E Ecym_2138 Hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E Ecym_4154 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E Ecym_1401 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1 D RPA (replication factor A) E Ecym_6168 hypothetical protein K07466 RFA1; replication factor A1 E Ecym_2034 Hypothetical protein K10739 RFA2; replication factor A2 D Protein phosphatase 4 E Ecym_5547 hypothetical protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E Ecym_6445 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3 D AP-5 complex D SMC5-SMC6 complex E Ecym_2625 Hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5 E Ecym_5344 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6 E Ecym_5076 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27] E Ecym_1358 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] E Ecym_4745 hypothetical protein K22823 NSMCE3; non-structural maintenance of chromosomes element 3 E Ecym_5634 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4 D Other HR factors E Ecym_3485 Hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-] E Ecym_2318 Hypothetical protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E Ecym_5526 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E Ecym_8301 Hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1 E Ecym_3061 Hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-] E Ecym_4260 hypothetical protein K15079 SLX4; structure-specific endonuclease subunit SLX4 E Ecym_2570 Hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-] E Ecym_8391 Hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1 E Ecym_7036 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E Ecym_6392 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] E Ecym_4473 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4] E Ecym_5069 hypothetical protein K15080 SAW1; single-strand annealing weakened protein 1 E Ecym_2336 Hypothetical protein K26124 RTT101; cullin 8 E Ecym_1440 hypothetical protein K26122 MMS22; E3 ubiquitin-protein ligase substrate receptor MMS22 E Ecym_7210 hypothetical protein K26123 MMS1; E3 ubiquitin-protein ligase linker protein MMS1 C NHEJ (non-homologous end-joining) D DNA-PK complex E Ecym_4620 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1 E Ecym_2476 Hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2 D MRX complex E Ecym_6250 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E Ecym_1108 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] E Ecym_4761 hypothetical protein K10868 XRS2; DNA repair protein XRS2 D DNA Ligase 4 complex E Ecym_3131 Hypothetical protein K10983 NEJ1; non-homologous end-joining protein 1 D X-family DNA polymerases E Ecym_1342 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7] D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors E Ecym_5333 hypothetical protein K11511 APITD1; centromere protein S D Bloom's syndrome complex (BTR) E Ecym_2138 Hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E Ecym_4154 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E Ecym_1401 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1 D FANCD2-I complex D Downstream FA components D Other FA pathway factors E Ecym_4690 hypothetical protein K04482 RAD51; DNA repair protein RAD51 E Ecym_4418 hypothetical protein K11137 TELO2; telomere length regulation protein E Ecym_5334 hypothetical protein K15361 WDR48; WD repeat-containing protein 48 C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others E Ecym_6429 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1 E Ecym_4649 hypothetical protein K24755 WDR76; WD repeat-containing protein 76 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Ecym_5052 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] C B-family DNA polymerases D Ecym_2378 Hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7] D Ecym_5378 hypothetical protein K03508 POLZ2; DNA polymerase zeta [EC:2.7.7.7] C A-family DNA polymerase C Rad6 epistasis group D Ecym_3077 Hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] D Ecym_2490 Hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27] D Ecym_2230 Hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D Ecym_5563 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D Ecym_7458 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex D Ecym_5010 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2] C HRAD17(Rad24)-RFC complex D Ecym_3515 Hypothetical protein K06662 HRAD17; cell cycle checkpoint protein D Ecym_2792 Hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4 D Ecym_3150 Hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4 D Ecym_3534 Hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5 D Ecym_7452 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex D Ecym_5010 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2] D Ecym_3102 Hypothetical protein K02544 MEC3; G2-specific checkpoint protein D Ecym_2218 Hypothetical protein K06663 DDC1; DNA damage checkpoint protein C FPC (fork protection complex) D Ecym_1083 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1 D Ecym_2288 Hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3 D Ecym_1008 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1 C Triple T complex D Ecym_4418 hypothetical protein K11137 TELO2; telomere length regulation protein C BAG6-UBL4A-GET4 complex D Ecym_3129 Hypothetical protein K23387 GET4; golgi to ER traffic protein 4 C Other check point factors D Ecym_6307 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1] D Ecym_5624 hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1] D Ecym_2303 Hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48] D Ecym_3513 Hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon D Ecym_2397 Hypothetical protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-] D Ecym_4141 hypothetical protein K06661 RAD9; DNA repair protein RAD9 D Ecym_8129 Hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1] D Ecym_5006 hypothetical protein K24663 NDD1; nuclear division defective protein 1 D Ecym_5396 hypothetical protein K24664 FKH; forkhead protein FKH D Ecym_2804 Hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases D Ecym_3009 Hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7] C Nucleases D Ecym_6059 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein D Ecym_1188 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-] C Helicases C PSO4 complex D Ecym_8406 Hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D Ecym_6234 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D Ecym_2401 Hypothetical protein K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D Ecym_4403 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Ecym_4318 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D Ecym_8305 Hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D Ecym_6011 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Ecym_4090 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Ecym_6188 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Ecym_2637 Hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Ecym_6343 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E Ecym_6343 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Ecym_4403 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024