+F Repair protein KO #

  DNA Repair and Recombination Proteins - Escherichia coli O104:H4 2009EL-2050 (EAEC)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D O3M_13625 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D O3M_18090 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E O3M_06545 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E O3M_04685 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E O3M_12035 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D O3M_20960 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D O3M_00670 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D O3M_13625 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D O3M_08330 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D O3M_18090 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D O3M_08335 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E O3M_06545 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E O3M_03650 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E O3M_09050 3-methyl-adenine DNA glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E O3M_04685 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E O3M_01145 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E O3M_00695 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E O3M_18060 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E O3M_12035 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E O3M_11195 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E O3M_08600 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E O3M_23785 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E O3M_05050 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E O3M_07395 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E O3M_00635 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E O3M_24490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E O3M_23480 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E O3M_17440 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E O3M_10030 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E O3M_11235 nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E O3M_24720 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E O3M_24490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E O3M_07395 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E O3M_00635 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F O3M_23845 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F O3M_23840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F O3M_02570 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F O3M_00625 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F O3M_14965 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E O3M_05930 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E O3M_22700 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E O3M_05400 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E O3M_09325 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E O3M_06915 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E O3M_19380 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E O3M_10695 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E O3M_20550 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E O3M_25959 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E O3M_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E O3M_22240 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E O3M_18370 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E O3M_15040 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E O3M_20410 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E O3M_25809 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E O3M_19115 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E O3M_21590 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E O3M_10705 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E O3M_07395 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E O3M_00635 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E O3M_24720 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E O3M_23475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E O3M_07660 hypothetical protein K03111 ssb; single-strand DNA-binding protein E O3M_02180 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E O3M_09795 very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E O3M_05455 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E O3M_05445 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E O3M_05460 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E O3M_06125 recA; recombinase A K03553 recA; recombination protein RecA E O3M_10600 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E O3M_10605 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E O3M_10590 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E O3M_14255 holliday junction resolvase K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E O3M_12435 crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E O3M_10340 putative Crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E O3M_17655 endodeoxyribonuclease RUS K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E O3M_24110 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E O3M_22535 primosomal replication protein N K02686 priB; primosomal replication protein N E O3M_19130 primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E O3M_21630 primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT E O3M_09325 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E O3M_19515 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E O3M_19510 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E O3M_06125 recA; recombinase A K03553 recA; recombination protein RecA E O3M_21500 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E O3M_00015 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E O3M_00610 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E O3M_05050 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E O3M_06630 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E O3M_19105 recR; recombination protein RecR K06187 recR; recombination protein RecR E O3M_06400 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E O3M_19530 exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E O3M_10600 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E O3M_10605 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E O3M_10590 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E O3M_05800 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E O3M_08470 nucleic acid ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E O3M_19515 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E O3M_19510 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E O3M_22220 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F O3M_08275 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F O3M_00020 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F O3M_13960 DNA topoisomerase I subunit omega K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F O3M_23775 transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha F O3M_19265 transcriptional regulator HU subunit beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F O3M_16200 DNA recombination protein Bet K07455 recT; recombination protein RecT F O3M_05050 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F O3M_06630 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F O3M_19105 recR; recombination protein RecR K06187 recR; recombination protein RecR F O3M_07395 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F O3M_00635 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F O3M_02705 fis; global DNA-binding transcriptional dual regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F O3M_11390 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F O3M_16765 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F O3M_09325 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F O3M_24665 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F O3M_23480 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F O3M_17440 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F O3M_14445 global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D O3M_20200 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D O3M_14715 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D O3M_26162 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D O3M_14720 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D O3M_26167 putative UV protection protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D O3M_25684 DNA repair protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D O3M_06125 recA; recombinase A K03553 recA; recombination protein RecA D O3M_23560 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D O3M_10335 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D O3M_06400 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D O3M_21155 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D O3M_23475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D O3M_07660 hypothetical protein K03111 ssb; single-strand DNA-binding protein D O3M_00645 dinD; DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D O3M_15230 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D O3M_10560 DNA-damage-inducible protein K12149 dinI; DNA-damage-inducible protein I D O3M_06130 recX; recombination regulator RecX K03565 recX; regulatory protein D O3M_02050 putative transposase K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-] D O3M_07920 putative transposase K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] D O3M_20805 putative transposase K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] D O3M_21730 transposase K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-] D O3M_08205 hypothetical protein K24090 rpnE; recombination-promoting nuclease RpnE B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D O3M_24900 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D O3M_16505 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D O3M_10880 Helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D O3M_17325 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D O3M_11930 putative ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D O3M_20960 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D O3M_00670 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D O3M_06220 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D O3M_08260 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D O3M_25849 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D O3M_08255 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D O3M_25844 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D O3M_06215 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024