+E Ribosome biogenesis KO
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Ribosome Biogenesis - Erwinia tasmaniensis
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D ETA_09920 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D ETA_29730 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C ETA_09930 era; GTP-binding protein K03595 era; GTPase
C ETA_03340 Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C ETA_08610 dksA; DnaK suppressor protein (DnaK suppressor protein homologue) K06204 dksA; RNA polymerase-binding transcription factor
C ETA_03460 nusA; Transcription elongation protein NusA (N utilization substance protein A) K02600 nusA; transcription termination/antitermination protein NusA
C ETA_25300 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C ETA_01500 nusG; Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D ETA_12620 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D ETA_07240 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ETA_31300 sun; rRNA methylase Sun K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ETA_06060 yjjT; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D ETA_32780 yhhF; Putative methylase YhhF K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D ETA_28300 yggJ; Conserved hypothetical protein YggJ K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D ETA_15110 yebU; Conserved hypothetical protein YebU K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D ETA_34830 gidB; Methyltransferase GidB (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ETA_07470 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ETA_29190 Putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ETA_33210 yhiQ; Conserved hypothetical protein YhiQ K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D ETA_15230 rrmA; Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D ETA_29590 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ETA_03400 rrmJ; Ribosomal RNA large subunit methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D ETA_22110 Conserved hypothetical protein (DUF890) K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D ETA_28960 rsmD; Putative ribosomal RNA small subunit methyltransferase D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D ETA_23520 Conserved hypothetical protein (DUF163) K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D ETA_20930 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ETA_33240 yhiR; Conserved hypothetical protein YhiR K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D ETA_21120 ycbY; Conserved hypothetical protein YcbY K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D ETA_27340 mtfA; Putative RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D ETA_10250 yfgB; Conserved hypothetical protein YfgB K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ETA_27240 rumA; 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D ETA_10430 Pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D ETA_07290 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D ETA_16100 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D ETA_20290 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D ETA_26440 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ETA_19500 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D ETA_00360 rluF; Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D ETA_09280 spoU; Predicted tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C ETA_06080 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C ETA_20490 rimJ; Ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C ETA_26500 Probable ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C ETA_26560 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C ETA_21460 ycaO; Conserved hypothetical protein YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C ETA_02740 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C ETA_11530 yfcB; Probable adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C ETA_19720 ycfD; Conserved hypothetical protein YcfD K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C ETA_09920 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C ETA_20300 ams; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C ETA_02880 cafA; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C ETA_28330 yqgF; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C ETA_16560 ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C ETA_03530 deaD; Cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C ETA_09810 ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C ETA_09930 era; GTP-binding protein K03595 era; GTPase
C ETA_29740 engC; Probable GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C ETA_10320 engA; GTP-binding protein K03977 engA; GTPase
C ETA_03340 Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C ETA_29660 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C ETA_00410 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C ETA_03480 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C ETA_03450 YhbC-like protein K09748 rimP; ribosome maturation factor RimP
C ETA_24350 Conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C ETA_23510 ybeB; Conserved hHypothetical protein YbeB K09710 ybeB; ribosome-associated protein
C ETA_23390 ybeY; Conserved hypothetical protein (UPF0054) K07042 ybeY; probable rRNA maturation factor
C ETA_03390 yhbY; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
C ETA_34210 Conserved hypothetical protein K14762 yibL; ribosome-associated protein
C ETA_29350 Conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C ETA_03140 yhbH; sigma 54 modulation protein/S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor
C ETA_26460 yfiA; Ribosome associated factor, stabilizes ribosomes against dissociation K05809 raiA; ribosome-associated inhibitor A
C ETA_18870 engD; Putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C ETA_20270 yceD; Conserved hypothetical protein YceD K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024