+F Repair protein KO
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DNA Repair and Recombination Proteins - Edwardsiella anguillarum
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ETEE_0228 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ETEE_0695 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ETEE_0903 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ETEE_2019 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ETEE_3740 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ETEE_2414 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_0325 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_3016 putative isopentenyl-diphosphate delta-isomerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_1823 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ETEE_0228 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ETEE_0695 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ETEE_0903 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ETEE_2213 G:T/U mismatch-specific uracil/thymine DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E ETEE_2019 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ETEE_1800 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E ETEE_1829 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E ETEE_0687 nei; endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E ETEE_3740 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ETEE_3500 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ETEE_3123 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E ETEE_1939 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E ETEE_1153 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ETEE_3087 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ETEE_1725 dpo1; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ETEE_1410 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E ETEE_0638 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E ETEE_0030 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E ETEE_1886 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ETEE_1725 dpo1; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ETEE_3087 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ETEE_1934 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ETEE_1935 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ETEE_1434 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ETEE_1815 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ETEE_0056 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ETEE_1095 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E ETEE_2105 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E ETEE_1108 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E ETEE_3116 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E ETEE_1006 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ETEE_2909 xseB; Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ETEE_2513 dnaE; DNA polymerase III epsilon subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ETEE_1781 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ETEE_1288 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E ETEE_0741 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ETEE_0083 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ETEE_1044 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ETEE_2964 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E ETEE_2237 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E ETEE_3546 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E ETEE_3087 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ETEE_1886 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ETEE_1409 ssb; single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein
E ETEE_1486 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ETEE_2475 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E ETEE_2473 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E ETEE_2476 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ETEE_1083 recA; protein RecA K03553 recA; recombination protein RecA
E ETEE_3437 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ETEE_3438 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ETEE_3436 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ETEE_0862 Holliday junction resolvase / Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E ETEE_0533 rusA; Holliday junction resolvase / Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E ETEE_1650 priA; primosomal protein N (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ETEE_2960 priC; Primosomal replication protein PriB and PriC K04067 priC; primosomal replication protein N''
E ETEE_3116 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E ETEE_3021 sbsC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E ETEE_3022 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E ETEE_1083 recA; protein RecA K03553 recA; recombination protein RecA
E ETEE_2301 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E ETEE_1782 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E ETEE_1812 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ETEE_1153 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ETEE_0825 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E ETEE_2966 recR; Recombination protein RecR K06187 recR; recombination protein RecR
E ETEE_0906 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E ETEE_0869 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E ETEE_3017 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E ETEE_0544 rdgC; putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC
E ETEE_3437 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ETEE_3438 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ETEE_3436 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E ETEE_2632 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
E ETEE_0337 DNA or RNA helicases of superfamily II K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E ETEE_3021 sbsC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E ETEE_3022 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ETEE_0358 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ETEE_1783 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ETEE_3556 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ETEE_1941 transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha
F ETEE_2938 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ETEE_3628 Exodeoxyribonuclease VIII K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
F ETEE_1153 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ETEE_0825 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F ETEE_2966 recR; Recombination protein RecR K06187 recR; recombination protein RecR
F ETEE_3087 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F ETEE_1343 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ETEE_3853 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F ETEE_0160 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F ETEE_3116 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F ETEE_1891 recQ; ATP-dependent DNA helicase RecQ, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ETEE_1410 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F ETEE_0638 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F ETEE_1198 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
F ETEE_3508 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ETEE_2551 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D ETEE_2565 umuC; Error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V
D ETEE_2566 umuD; Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D ETEE_1083 recA; protein RecA K03553 recA; recombination protein RecA
D ETEE_1988 SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ETEE_0906 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ETEE_2370 DNA polymerase III delta subunit K02336 polB; DNA polymerase II [EC:2.7.7.7]
D ETEE_1409 ssb; single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein
D ETEE_0061 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D ETEE_1082 recX; regulatory protein RecX, putative K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D ETEE_1856 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D ETEE_3228 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D ETEE_3119 dinG; ATP-dependent helicase DinG/Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D ETEE_3455 yoaA; DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D ETEE_2414 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_0325 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_3016 putative isopentenyl-diphosphate delta-isomerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ETEE_1823 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ETEE_0361 nrdA; Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ETEE_0362 nrdB; Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024