+E Transcription factors KO
#
Transcription Factors - Winslowiella toletana
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RIN69_14260 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D RIN69_10450 araC; arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D RIN69_11045 araC; arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D RIN69_11820 rhaR; HTH-type transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D RIN69_11815 rhaS; HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D RIN69_20525 soxS; superoxide response transcriptional regulator SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RIN69_11700 helix-turn-helix domain-containing protein K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RIN69_00795 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RIN69_03515 robA; MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RIN69_03385 helix-turn-helix domain-containing protein K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D RIN69_07365 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D RIN69_21450 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D RIN69_21210 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D RIN69_03590 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D RIN69_21565 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RIN69_18325 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RIN69_12475 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D RIN69_14495 cbl; HTH-type transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D RIN69_16660 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D RIN69_20360 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D RIN69_19405 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D RIN69_06370 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D RIN69_14500 nac; nitrogen assimilation transcriptional regulator NAC K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RIN69_02910 LysR substrate-binding domain-containing protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RIN69_02305 aaeR; HTH-type transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D RIN69_21495 hdfR; HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D RIN69_03440 deoR; DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D RIN69_01485 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D RIN69_18720 LacI family DNA-binding transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D RIN69_08955 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_15060 galS; HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_18115 galR; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_22120 rbsR; ribose operon transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_00145 xylR; D-xylose utilization transcriptional activator XylR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_01160 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_03085 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RIN69_00105 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D RIN69_21635 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D RIN69_04085 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D RIN69_00780 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RIN69_07455 treR; trehalose operon repressor TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D RIN69_06615 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D RIN69_09890 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D RIN69_10730 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D RIN69_01420 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D RIN69_15665 LacI family DNA-binding transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D RIN69_11080 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D RIN69_14460 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D RIN69_07850 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RIN69_12845 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D RIN69_04255 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RIN69_18125 FCD domain-containing protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D RIN69_19515 exuR; transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D RIN69_09920 lldR; transcriptional regulator LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D RIN69_05065 FadR/GntR family transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D RIN69_15765 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RIN69_18790 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RIN69_00645 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RIN69_14975 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D RIN69_00680 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D RIN69_10935 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D RIN69_05775 acrR; multidrug efflux transporter transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D RIN69_21895 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D RIN69_08610 rutR; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D RIN69_10770 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RIN69_11950 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RIN69_11790 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D RIN69_21555 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D RIN69_22200 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D RIN69_08205 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RIN69_05675 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D RIN69_00810 Lrp/AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D RIN69_08630 sdiA; transcriptional regulator SdiA K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D RIN69_11880 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D RIN69_14185 rcsA; transcriptional regulator RcsA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D RIN69_01490 malT; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D RIN69_09045 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D RIN69_10825 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D RIN69_17375 mprA; transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D RIN69_20255 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RIN69_05900 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RIN69_02070 zntR; Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D RIN69_20520 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D RIN69_07800 MerR family transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D RIN69_06920 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RIN69_20650 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D RIN69_20830 iclR; glyoxylate bypass operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RIN69_13010 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D RIN69_01745 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RIN69_11980 FNR family transcription factor K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D RIN69_16760 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RIN69_20020 nsrR; nitric oxide-sensing transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RIN69_11715 Rrf2 family transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
C XRE family
D RIN69_11650 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D RIN69_07930 mntR; manganese-binding transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D RIN69_10890 MurR/RpiR family transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D RIN69_13260 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RIN69_21075 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RIN69_02210 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RIN69_03500 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D RIN69_02520 helix-turn-helix transcriptional regulator K07724 ner; Ner family transcriptional regulator
D RIN69_04040 sgrR; HTH-type transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D RIN69_03365 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D RIN69_04520 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D RIN69_07440 modE; molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D RIN69_00405 HTH-type transcriptional regulator K07726 K07726; putative transcriptional regulator
D RIN69_11490 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D RIN69_18650 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D RIN69_21620 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D RIN69_13600 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RIN69_22430 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D RIN69_12130 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RIN69_14585 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D RIN69_05605 bolA; transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RIN69_22570 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RIN69_22660 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RIN69_21145 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D RIN69_02345 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D RIN69_06890 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D RIN69_11120 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D RIN69_00360 mtlR; mannitol operon repressor MtlR K02562 mtlR; mannitol operon repressor
D RIN69_14295 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RIN69_12160 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D RIN69_00985 winged helix-turn-helix domain-containing protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1
D RIN69_16510 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D RIN69_12200 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D RIN69_12185 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C
D RIN69_05995 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D RIN69_02825 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D RIN69_18480 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D RIN69_04445 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RIN69_05495 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RIN69_05025 crl; sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D RIN69_04090 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0