+E Ribosome biogenesis KO
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Ribosome Biogenesis - Escherichia coli UMNK88 (ETEC, porcine)
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D UMNK88_3220 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D UMNK88_5100 conserved hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C UMNK88_3219 era; GTP-binding protein K03595 era; GTPase
C UMNK88_3944 GTP-binding protein CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C UMNK88_149 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C UMNK88_3929 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C UMNK88_466 nusB; transcription antitermination factor protein NusB K03625 nusB; transcription antitermination protein NusB
C UMNK88_4822 nusG; transcription termination/antitermination factor protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D UMNK88_2731 conserved hypothetical protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D UMNK88_51 ksgA; dimethyladenosine transferase KsgA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D UMNK88_4049 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D UMNK88_5288 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D UMNK88_4235 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D UMNK88_3642 RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D UMNK88_2306 conserved hypothetical protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D UMNK88_4552 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D UMNK88_82 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D UMNK88_3906 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D UMNK88_4272 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D UMNK88_2292 ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D UMNK88_5119 conserved hypothetical protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D UMNK88_3940 rrmJ; ribosomal RNA large subunit methyltransferase RrmJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D UMNK88_848 conserved hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D UMNK88_3839 ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D UMNK88_672 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D UMNK88_1122 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D UMNK88_4274 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D UMNK88_1103 conserved hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D UMNK88_3491 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D UMNK88_3167 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D UMNK88_3468 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D UMNK88_955 rumB; 23S rRNA methyluridine methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D UMNK88_56 pseudouridine synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D UMNK88_1598 23S rRNA pseudouridylate synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D UMNK88_1355 pseudouridine synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D UMNK88_3249 ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D UMNK88_1467 ribosomal pseudouridine synthase, large subunit K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D UMNK88_4874 23S rRNA pseudouridylate synthase F YjbC K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D UMNK88_3234 RNA 2'-O ribose methyltransferase substrate binding protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C UMNK88_5290 rimI; ribosomal-protein-alanine acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C UMNK88_1333 ribosomal-protein-S5-alanine N-acetyltransferase rimJ K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C UMNK88_947 glutathione synthetase GshB K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C UMNK88_1826 ribosomal-protein-serine acetyltransferase RimL K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C UMNK88_3261 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C UMNK88_876 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C UMNK88_1057 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C UMNK88_4019 prmA; ribosomal protein L11 methyltransferase PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C UMNK88_2883 prmB; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific PrmB K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C UMNK88_1459 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C UMNK88_3220 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C UMNK88_1352 ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
C UMNK88_4007 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C UMNK88_3645 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C UMNK88_1779 ATP-independent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C UMNK88_3922 cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C UMNK88_3229 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C UMNK88_3219 era; GTP-binding protein K03595 era; GTPase
C UMNK88_5099 rsgA; ribosome small subunit-dependent GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C UMNK88_3161 conserved hypothetical protein K03977 engA; GTPase
C UMNK88_3944 GTP-binding protein CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C UMNK88_5112 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C UMNK88_4043 ribosome maturation factor protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C UMNK88_4455 conserved hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C UMNK88_3927 rbfA; ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
C UMNK88_3930 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C UMNK88_578 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C UMNK88_673 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C UMNK88_697 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C UMNK88_3941 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C UMNK88_4389 conserved hypothetical protein K14762 yibL; ribosome-associated protein
C UMNK88_5180 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C UMNK88_3965 raiA; putative sigma(54) modulation protein (ORF95) RaiA K05808 hpf; ribosome hibernation promoting factor
C UMNK88_3251 raiA; ribosomal subunit interface protein RaiA K05809 raiA; ribosome-associated inhibitor A
C UMNK88_1885 30S ribosomal protein subunit S22 protein RpsV K02972 sra; stationary-phase-induced ribosome-associated protein
C UMNK88_1519 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C UMNK88_1358 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024