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Transcription Machinery - Euzebya pacifica
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E DVS28_a0478 DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E DVS28_a4458 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E DVS28_a4504 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E DVS28_a4503 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E DVS28_a1798 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E DVS28_a3076 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E DVS28_a3511 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E DVS28_b0365 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E DVS28_a3261 RNA polymerase sigma factor RpoD K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E DVS28_a1550 putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E DVS28_a3509 RNA polymerase sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E DVS28_a1053 RNA polymerase sigma factor SigB K03090 sigB; RNA polymerase sigma-B factor
E DVS28_a4839 RNA polymerase sigma factor SigB K03090 sigB; RNA polymerase sigma-B factor
E DVS28_a3242 RNA polymerase sporulation specific sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor
E DVS28_a4075 RNA polymerase sporulation specific sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor
E DVS28_a4936 RNA polymerase sporulation specific sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor
E DVS28_a0361 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
E DVS28_a1192 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
E DVS28_a2271 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
E DVS28_a3412 RNA polymerase sigma factor SigB K02405 fliA; RNA polymerase sigma factor FliA
E DVS28_b0445 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E DVS28_a3390 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E DVS28_a1779 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
E DVS28_a4518 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E DVS28_a3652 Hydrolase of specificity RsbQ K19707 rsbQ; sigma-B regulation protein RsbQ
E DVS28_a4376 Anti-sigma B factor antagonist RsbV K04749 rsbV; anti-sigma B factor antagonist
E DVS28_a1054 Serine-protein kinase RsbW K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E DVS28_a4375 hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E DVS28_a0132 Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E DVS28_a3889 Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E DVS28_a3780 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 17, 2025