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Transcription Machinery - Ficedula albicollis (collared flycatcher)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 101819277 DNA-directed RNA polymerase II subunit RPB1-like K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 101814603 POLR2B; RNA polymerase II subunit B K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 101818664 POLR2C; RNA polymerase II subunit C K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 101819581 POLR2J; RNA polymerase II subunit J K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 101805874 POLR2D; RNA polymerase II subunit D K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 101813940 POLR2I; RNA polymerase II subunit I K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 101817569 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 101819998 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 101806753 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 101815709 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 101819559 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 101812511 GTF2A1; general transcription factor IIA subunit 1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 101818663 GTF2A2; general transcription factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 101816460 GTF2B; general transcription factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 101809723 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101815196 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101813419 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101809054 TAF1; TATA-box binding protein associated factor 1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 101817393 TAF2; TATA-box binding protein associated factor 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 101819136 TAF3; TATA-box binding protein associated factor 3 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 101819761 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101821179 TAF4B; TATA-box binding protein associated factor 4b K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101807221 TAF4; TATA-box binding protein associated factor 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101818046 TAF5L; TATA-box binding protein associated factor 5 like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 101808346 TAF5; TATA-box binding protein associated factor 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 101821525 TAF7L; TATA-box binding protein associated factor 7 like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 101817779 TAF8; TATA-box binding protein associated factor 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 101819478 TAF9B; TATA-box binding protein associated factor 9b K14535 TAF9; transcription initiation factor TFIID subunit 9
E 101810147 TAF10; TATA-box binding protein associated factor 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 101821362 TAF11; TATA-box binding protein associated factor 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 101813127 TAF12; TATA-box binding protein associated factor 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 101814264 TAF13; TATA-box binding protein associated factor 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 101811863 TAF15; TATA-box binding protein associated factor 15 K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 101805828 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 101806233 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFIIF
E 107604408 GTF2F1; general transcription factor IIF subunit 1 K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E 101806015 GTF2F2; general transcription factor IIF subunit 2 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 101821325 GTF2H1; general transcription factor IIH subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 101820645 GTF2H2; general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 101805882 GTF2H3; general transcription factor IIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 101813042 ERCC3; ERCC excision repair 3, TFIIH core complex helicase subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 101808523 GTF2H5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 101821891 CDK7; cyclin dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 101810363 MNAT1; MNAT1, CDK activating kinase assembly factor K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 101808888 CCNH; cyclin H K06634 CCNH; cyclin H
C Mediator complex
D Head
E 101813111 MED6; mediator complex subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 101810747 MED8; mediator complex subunit 8 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 101805777 MED11; mediator complex subunit 11 K15131 MED11; mediator of RNA polymerase II transcription subunit 11
E 101809439 MED17; mediator complex subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 101815245 MED18; mediator complex subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 101821256 MED19; mediator complex subunit 19 K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 101820639 MED20; mediator complex subunit 20 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 101807983 MED22; mediator complex subunit 22 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 101811328 MED28; mediator complex subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 101815648 MED30; mediator complex subunit 30 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 101818875 MED1; mediator complex subunit 1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 101820065 mediator of RNA polymerase II transcription subunit 1-like K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 101806781 MED4; mediator complex subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 101821272 MED7; mediator complex subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 101805881 MED9; mediator complex subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 107604298 mediator of RNA polymerase II transcription subunit 9-like K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 101809242 MED10; mediator complex subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 101813647 MED31; mediator complex subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 101815305 MED14; mediator complex subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 101809352 MED15; mediator complex subunit 15 K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 101807993 MED16; mediator complex subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 101809830 CDK8; cyclin dependent kinase 8 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 101817011 CDK19; cyclin dependent kinase 19 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 101811442 CCNC; cyclin C K15161 CCNC; cyclin-C
E 101811908 MED12; mediator complex subunit 12 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 101821209 MED13L; mediator complex subunit 13 like K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 101809818 MED13; mediator complex subunit 13 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 101806228 MED23; mediator complex subunit 23 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 101815951 MED24; mediator complex subunit 24 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 101815685 MED26; mediator complex subunit 26 K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E 101819440 MED27; mediator complex subunit 27 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 101819015 KAT2A; lysine acetyltransferase 2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 101820857 KAT2B; lysine acetyltransferase 2B K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 101811728 TRRAP; transformation/transcription domain associated protein K08874 TRRAP; transformation/transcription domain-associated protein
E 101811324 SUPT3H; SPT3 homolog, SAGA and STAGA complex component K11313 SUPT3H; transcription initiation protein SPT3
E 101805887 TADA2A; transcriptional adaptor 2A K11314 TADA2A; transcriptional adapter 2-alpha
E 101820805 TADA2B; transcriptional adaptor 2B K15127 TADA2B; transcriptional adapter 2-beta
E 101813438 TADA3; transcriptional adaptor 3 K11315 TADA3; transcriptional adapter 3
E 101808927 TADA1; transcriptional adaptor 1 K11317 TADA1; transcriptional adapter 1
E 101817393 TAF2; TATA-box binding protein associated factor 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 101819761 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101821179 TAF4B; TATA-box binding protein associated factor 4b K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101807221 TAF4; TATA-box binding protein associated factor 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 101818046 TAF5L; TATA-box binding protein associated factor 5 like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 101808346 TAF5; TATA-box binding protein associated factor 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 101821525 TAF7L; TATA-box binding protein associated factor 7 like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 101819478 TAF9B; TATA-box binding protein associated factor 9b K14535 TAF9; transcription initiation factor TFIID subunit 9
E 101810147 TAF10; TATA-box binding protein associated factor 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 101813127 TAF12; TATA-box binding protein associated factor 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 101815250 ATXN7L3; ataxin 7 like 3 K11363 SGF11; SAGA-associated factor 11
E 101810597 SUPT7L; SPT7-like STAGA complex gamma subunit K11316 SUPT7L; STAGA complex 65 subunit gamma
E 101814499 ATXN7L2; ataxin 7 like 2 K11318 ATXN7; ataxin-7
E 101806065 ATXN7; ataxin 7 K11318 ATXN7; ataxin-7
E 101811627 ATXN7L1; ataxin 7 like 1 K11318 ATXN7; ataxin-7
E 101808061 CHD1; chromodomain helicase DNA binding protein 1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 101808972 ENY2; ENY2, transcription and export complex 2 subunit K11368 ENY2; enhancer of yellow 2 transcription factor
E 101808807 USP22; ubiquitin specific peptidase 22 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 101819894 SF3B3; splicing factor 3b subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 101821220 SMARCA2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 101815444 SMARCA4; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 101816714 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 101820202 SMARCC1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 101816341 SMARCD1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 101812347 SMARCD3; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 101808239 SMARCD2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 101812790 SMARCE1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 101808355 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1
E 101815742 ACTG1; actin gamma 1 K05692 ACTB_G1; actin beta/gamma 1
E 101813373 ACTB; actin beta K05692 ACTB_G1; actin beta/gamma 1
E 101813365 ACTL6A; actin like 6A K11340 ACTL6A; actin-like protein 6A
E 101818562 actin-like protein 6B K11652 ACTL6B; actin-like protein 6B
E 101811638 ARID1B; AT-rich interaction domain 1B K11653 ARID1; AT-rich interactive domain-containing protein 1
E 101815098 ARID1A; AT-rich interaction domain 1A K11653 ARID1; AT-rich interactive domain-containing protein 1
E 101814987 ARID2; AT-rich interaction domain 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 101815423 PBRM1; polybromo 1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 101816714 SMARCB1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 101818938 SUB1; SUB1 homolog, transcriptional regulator K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 101813420 CCAR1; cell division cycle and apoptosis regulator 1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
C Other transcription-related factors
D Transcription elongation factors
E 101811242 TCEA1; transcription elongation factor A1 K03145 TFIIS; transcription elongation factor S-II
E 101813066 TCEA2; transcription elongation factor A2 K03145 TFIIS; transcription elongation factor S-II
E 101821556 TCEA3; transcription elongation factor A3 K03145 TFIIS; transcription elongation factor S-II
E 101820765 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 101818674 SUPT6H; SPT6 homolog, histone chaperone K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 101820783 TTF2; transcription termination factor 2 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 101811687 PCF11; PCF11 cleavage and polyadenylation factor subunit K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 101817315 CPSF1; cleavage and polyadenylation specific factor 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 101819553 CPSF3; cleavage and polyadenylation specific factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 101810763 CPSF4L; cleavage and polyadenylation specific factor 4 like K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 101810258 CPSF4; cleavage and polyadenylation specific factor 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 107603979 PPP1CC; protein phosphatase 1 catalytic subunit gamma K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101813100 PPP1CB; protein phosphatase 1 catalytic subunit beta K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101810420 PPP1CA; protein phosphatase 1 catalytic subunit alpha K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101811090 SSU72; SSU72 homolog, RNA polymerase II CTD phosphatase K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 101816872 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 101809274 RPRD1B; regulation of nuclear pre-mRNA domain containing 1B K15559 RTT103; regulator of Ty1 transposition protein 103
E 101816939 RPRD1A; regulation of nuclear pre-mRNA domain containing 1A K15559 RTT103; regulator of Ty1 transposition protein 103
E 101806916 SFPQ; splicing factor proline and glutamine rich K13219 SFPQ; splicing factor, proline- and glutamine-rich
E 101820669 SCAF8; SR-related CTD associated factor 8 K13191 RBM16; RNA-binding protein 16
E 101805635 splicing factor, arginine/serine-rich 15 K13167 SCAF4; SR-related and CTD-associated factor 4
E 101819768 SETX; senataxin K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 107604406 PIN1; peptidylprolyl cis/trans isomerase, NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 101807263 CDC73; cell division cycle 73 K15175 CDC73; parafibromin
E 101816752 CTR9; CTR9 homolog, Paf1/RNA polymerase II complex component K15176 CTR9; RNA polymerase-associated protein CTR9
E 101806630 LEO1; LEO1 homolog, Paf1/RNA polymerase II complex component K15177 LEO1; RNA polymerase-associated protein LEO1
E 101818514 RTF1; RTF1 homolog, Paf1/RNA polymerase II complex component K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 101814280 NELFA; negative elongation factor complex member A K15179 WHSC2; negative elongation factor A
E 101808753 NELFB; negative elongation factor complex member B K15180 COBRA1; negative elongation factor B
E 101810444 negative elongation factor C/D K15181 TH1L; negative elongation factor C/D
D Super elongation complex (SEC)
E 101815179 ELL2; elongation factor for RNA polymerase II 2 K15183 ELL; RNA polymerase II elongation factor ELL
E 101811680 ELL; elongation factor for RNA polymerase II K15183 ELL; RNA polymerase II elongation factor ELL
E 101808336 AFF1; AF4/FMR2 family member 1 K15184 AFF1; AF4/FMR2 family member 1
E 101812257 AFF4; AF4/FMR2 family member 4 K15185 AFF4; AF4/FMR2 family member 4
E 101809919 EAF2; ELL associated factor 2 K15186 EAF; ELL-associated factor
E 101821236 EAF1; ELL associated factor 1 K15186 EAF; ELL-associated factor
E 101812469 MLLT1; MLLT1, super elongation complex subunit K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 101811354 MLLT3; MLLT3, super elongation complex subunit K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 101817118 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 107603754 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 101819061 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E 101815179 ELL2; elongation factor for RNA polymerase II 2 K15183 ELL; RNA polymerase II elongation factor ELL
E 101811680 ELL; elongation factor for RNA polymerase II K15183 ELL; RNA polymerase II elongation factor ELL
E 101806350 ICE1; interactor of little elongation complex ELL subunit 1 K26143 ICE1; little elongation complex subunit 1
E 101819825 ICE2; interactor of little elongation complex ELL subunit 2 K26144 ICE2; little elongation complex subunit 2
D Brd4/P-TEFb complex
E 101817118 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 107603754 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 101819061 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 101809437 HEXIM1; protein HEXIM1 K15189 HEXIM1_2; protein HEXIM1/2
E 101818753 MEPCE; methylphosphate capping enzyme K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 101822245 LARP7; La ribonucleoprotein domain family member 7 K15191 LARP7; La-related protein 7
E 101817118 CCNT1; cyclin T1 K15188 CCNT; cyclin T
E 107603754 CCNT2; cyclin T2 K15188 CCNT; cyclin T
E 101819061 CDK9; cyclin dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
E 101818853 ZNF326; zinc finger protein 326 K13204 ZNF326; zinc finger protein 326
D Others
E 101806711 GTF2I; general transcription factor IIi K03121 TFII-I; transcription initiation factor TFII-I
E 101806911 GTF2IRD1; GTF2I repeat domain containing 1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 101814743 BTAF1; B-TFIID TATA-box binding protein associated factor 1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 101819048 DR1; down-regulator of transcription 1 K21751 DR1; down-regulator of transcription 1
E 101819945 SPTY2D1; SPT2 chromatin protein domain containing 1 K15193 SPTY2D1; protein SPT2
E 101810175 AFF2; AF4/FMR2 family member 2 K15194 AFF2; AF4/FMR2 family member 2
E 101815955 AFF3; AF4/FMR2 family member 3 K15195 AFF3; AF4/FMR2 family member 3
E 101811701 CTDP1; CTD phosphatase subunit 1 K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 101815124 CTDSPL; CTD small phosphatase like K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 101814615 CTDSP1; CTD small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 101813902 IWS1; IWS1, SUPT6H interacting protein K17498 SPN1; transcription factor SPN1
E 101817190 cysteine/serine-rich nuclear protein 3-like K17494 CSRNP; cysteine/serine-rich nuclear protein
E 101818962 CSRNP1; cysteine and serine rich nuclear protein 1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 101821932 CSRNP3; cysteine and serine rich nuclear protein 3 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 101817531 RPAP1; RNA polymerase II associated protein 1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 101822193 RPAP2; RNA polymerase II associated protein 2 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 101821967 RPAP3; RNA polymerase II associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 101815596 CCNK; cyclin K K23326 CCNK; cyclin K
E 101815299 GPN2; GPN-loop GTPase 2 K24104 GPN; GPN-loop GTPase
E 101807236 GPN1; GPN-loop GTPase 1 K24104 GPN; GPN-loop GTPase
E 101816974 GPN3; GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 101807635 POLR3A; RNA polymerase III subunit A K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 101821234 POLR3B; RNA polymerase III subunit B K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 101814151 POLR1C; RNA polymerase I subunit C K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 101815986 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 101821301 POLR3D; RNA polymerase III subunit D K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 101817292 POLR3E; RNA polymerase III subunit E K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 101812095 POLR3F; RNA polymerase III subunit F K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 101807932 POLR3H; RNA polymerase III subunit H K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 101808567 CRCP; CGRP receptor component K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 101808426 POLR3K; RNA polymerase III subunit K K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 101817569 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 101819998 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 101806753 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 101815709 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 101819559 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 101807999 GTF3A; general transcription factor IIIA K09191 GTF3A; general transcription factor IIIA
E 101809232 zinc finger protein 436-like K09191 GTF3A; general transcription factor IIIA
E 101815698 zinc finger protein 239-like K09191 GTF3A; general transcription factor IIIA
E 107604545 zinc finger protein 3-like K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 101809723 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101815196 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101813419 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101818849 BRF1; BRF1, RNA polymerase III transcription initiation factor subunit K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 101808570 BRF2; BRF2, RNA polymerase III transcription initiation factor subunit K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 101819400 BDP1; B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 101808626 GTF3C1; general transcription factor IIIC subunit 1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 101808310 GTF3C2; general transcription factor IIIC subunit 2 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 101807256 GTF3C3; general transcription factor IIIC subunit 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 101821681 GTF3C4; general transcription factor IIIC subunit 4 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 101806315 GTF3C5; general transcription factor IIIC subunit 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 101817200 GTF3C6; general transcription factor IIIC subunit 6 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 101806315 GTF3C5; general transcription factor IIIC subunit 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 101807256 GTF3C3; general transcription factor IIIC subunit 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 101809600 SNAPC1; small nuclear RNA activating complex polypeptide 1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 101818884 SNAPC3; small nuclear RNA activating complex polypeptide 3 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 101814896 SNAPC4; small nuclear RNA activating complex polypeptide 4 K09453 SNAPC4; snRNA-activating protein complex subunit 4
E 101809473 SNAPC5; small nuclear RNA activating complex polypeptide 5 K15211 SNAPC5; snRNA-activating protein complex subunit 5
D Octamer transcription factors
E 101807295 POU2F1; POU class 2 homeobox 1 K09364 POU2F; POU domain transcription factor, class 2
E 101812729 POU2F3; POU class 2 homeobox 3 K09364 POU2F; POU domain transcription factor, class 2
E 101822006 POU domain, class 5, transcription factor 3-like K09367 POU5F; POU domain transcription factor, class 5
D Others
E 101819091 ZNF143; zinc finger protein 143 K20828 ZNF143_76; zinc finger protein 143/76
E 101822221 ZNF76; zinc finger protein 76 K20828 ZNF143_76; zinc finger protein 143/76
E 101820655 MAF1; MAF1 homolog, negative regulator of RNA polymerase III K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 101813159 POLR1A; RNA polymerase I subunit A K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 101817792 POLR1B; RNA polymerase I subunit B K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 101814151 POLR1C; RNA polymerase I subunit C K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 101815986 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 101816677 POLR1E; RNA polymerase I subunit E K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 101807129 TWISTNB; TWIST neighbor K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E 101817569 POLR2E; RNA polymerase II subunit E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 101819998 POLR2F; RNA polymerase II subunit F K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 101806753 POLR2H; RNA polymerase II subunit H K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 101815709 POLR2K; RNA polymerase II subunit K K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 101819559 POLR2L; RNA polymerase II subunit L K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 101809723 TBPL1; TATA-box binding protein like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101815196 TBP; TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101813419 TBPL2; TATA-box binding protein like 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 101811757 TAF1A; TATA-box binding protein associated factor, RNA polymerase I subunit A K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
E 101814864 TAF1B; TATA-box binding protein associated factor, RNA polymerase I subunit B K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 101806850 TAF1C; TATA-box binding protein associated factor, RNA polymerase I subunit C K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 101814641 TAF1D; TATA-box binding protein associated factor, RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 101813934 UBTF; upstream binding transcription factor, RNA polymerase I K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 101813976 RRN3; RRN3 homolog, RNA polymerase I transcription factor K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 101820765 SUPT4H1; SPT4 homolog, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
D NoRC (nucleolar remodeling complex)
E 101813290 SMARCA5; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 101820848 BAZ2A; bromodomain adjacent to zinc finger domain 2A K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A
D CTDK-I complex
D Transcription termination factors
E 101821211 TTF1; transcription termination factor 1 K15225 TTF1; transcription termination factor 1
E 101809944 PTRF; polymerase I and transcript release factor K19387 PTRF; polymerase I and transcript release factor
D Others
E 101814880 NOLC1; nucleolar and coiled-body phosphoprotein 1 K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 101816460 GTF2B; general transcription factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 101805828 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 101806233 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024