+D GENES KO #

  KEGG Orthology (KO) - Fructilactobacillus cliffordii

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:fcli00010] D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D M3M38_02120 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M38_04175 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M38_02465 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M38_02475 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M38_02470 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M38_02840 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_03215 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M38_00575 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M38_06025 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_02730 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00020 Citrate cycle (TCA cycle) D M3M38_03620 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] C 00030 Pentose phosphate pathway [PATH:fcli00030] D M3M38_02120 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M38_04080 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D M3M38_02365 lactonase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D M3M38_04085 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D M3M38_01050 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D M3M38_02830 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D M3M38_02180 orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D M3M38_02175 SIS domain-containing protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D M3M38_05015 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D M3M38_05390 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M38_07025 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M38_03065 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M38_03935 glucose 1-dehydrogenase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D M3M38_06475 gntK; gluconokinase K25031 gntK; gluconokinase [EC:2.7.1.12] D M3M38_04175 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] C 00040 Pentose and glucuronate interconversions [PATH:fcli00040] D M3M38_03940 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M38_01050 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D M3M38_05285 FGGY family carbohydrate kinase K24707 E2.7.1.16; ribulokinase [EC:2.7.1.16] D M3M38_05755 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] C 00051 Fructose and mannose metabolism [PATH:fcli00051] D M3M38_02125 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D M3M38_05870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D M3M38_04175 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M38_02465 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:fcli00052] D M3M38_03735 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D M3M38_03940 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D M3M38_03895 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D M3M38_04020 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D M3M38_04075 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:fcli00500] D M3M38_04020 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D M3M38_04075 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D M3M38_00790 KxYKxGKxW signal peptide domain-containing protein K00689 E2.4.1.5; dextransucrase [EC:2.4.1.5] D M3M38_03940 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D M3M38_02120 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M38_02125 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:fcli00520] D M3M38_02125 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D M3M38_02375 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M38_02380 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D M3M38_03070 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D M3M38_01880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_03035 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_02400 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M38_03940 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M38_03735 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D M3M38_03895 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D M3M38_02120 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M38_05870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] C 00620 Pyruvate metabolism [PATH:fcli00620] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M38_01565 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M38_02420 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M38_00575 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M38_03555 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D M3M38_03575 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D M3M38_03565 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D M3M38_03560 acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D M3M38_04305 spxB; pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3] D M3M38_06025 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_02730 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_05765 D-2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D M3M38_02185 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D M3M38_03665 aldo/keto reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D M3M38_04465 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D M3M38_03620 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D M3M38_04950 NAD-dependent malic enzyme K22212 mleA; malolactic enzyme [EC:4.1.1.101] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:fcli00630] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_04185 catalase K03781 katE; catalase [EC:1.11.1.6] D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M38_05645 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_01935 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00640 Propanoate metabolism [PATH:fcli00640] D M3M38_01565 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M38_02420 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M38_03555 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D M3M38_03575 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D M3M38_03565 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D M3M38_03560 acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D M3M38_06025 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_02730 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_05290 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D M3M38_03665 aldo/keto reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] C 00650 Butanoate metabolism [PATH:fcli00650] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_02625 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D M3M38_00115 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D M3M38_01980 alsS; acetolactate synthase AlsS K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M38_01975 budA; acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D M3M38_06525 acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] D M3M38_00410 (S)-acetoin forming diacetyl reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:fcli00660] D M3M38_01980 alsS; acetolactate synthase AlsS K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M38_01975 budA; acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] C 00562 Inositol phosphate metabolism D M3M38_02465 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:fcli00190] D M3M38_04970 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D M3M38_04975 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D M3M38_04980 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D M3M38_01905 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D M3M38_01895 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D M3M38_01900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D M3M38_01910 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D M3M38_01890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D M3M38_01925 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D M3M38_01915 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D M3M38_01920 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D M3M38_00735 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D M3M38_04755 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:fcli00710] D M3M38_02470 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M38_02475 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M38_04175 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M38_02830 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D M3M38_02465 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M38_01050 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00720 Other carbon fixation pathways [PATH:fcli00720] D M3M38_03620 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_03555 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D M3M38_03575 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D M3M38_03565 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D M3M38_03560 acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D M3M38_06010 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D M3M38_01115 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D M3M38_04000 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M38_02420 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M38_01565 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:fcli00680] D M3M38_05645 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_01935 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M38_04175 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M38_02175 SIS domain-containing protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D M3M38_02180 orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D M3M38_01565 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M38_02420 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M38_02840 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_03215 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_06500 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00910 Nitrogen metabolism D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism D M3M38_01700 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:fcli00061] D M3M38_03555 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D M3M38_03575 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D M3M38_03565 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D M3M38_03560 acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D M3M38_03655 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_01015 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_03595 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_03590 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M38_03600 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D M3M38_03580 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M38_03585 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M38_03570 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03605 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03550 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D M3M38_05800 nitronate monooxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:fcli00071] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis D M3M38_03655 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_01015 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_03595 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_03590 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:fcli00561] D M3M38_05290 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D M3M38_00945 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D M3M38_01020 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D M3M38_00720 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D M3M38_00275 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M38_06365 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D M3M38_06690 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D M3M38_05230 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D M3M38_06705 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] C 00564 Glycerophospholipid metabolism [PATH:fcli00564] D M3M38_02525 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D M3M38_00720 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D M3M38_00275 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M38_06365 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D M3M38_00320 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D M3M38_01750 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D M3M38_04515 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:fcli00230] D M3M38_06975 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M38_07025 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M38_03065 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M38_05985 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D M3M38_06005 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D M3M38_05995 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D M3M38_05980 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D M3M38_05970 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D M3M38_05975 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M38_05990 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D M3M38_05960 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D M3M38_06330 hypothetical protein K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D M3M38_05955 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D M3M38_05965 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D M3M38_03630 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D M3M38_06000 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M38_07210 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D M3M38_02955 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D M3M38_03960 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M38_01630 XTP/dITP diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D M3M38_06090 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D M3M38_03965 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D M3M38_04365 GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D M3M38_05740 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D M3M38_01085 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D M3M38_02720 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M38_02725 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D M3M38_00455 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D M3M38_03140 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D M3M38_06855 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D M3M38_03640 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D M3M38_05725 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D M3M38_05190 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D M3M38_01735 TIGR00282 family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D M3M38_06225 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:fcli00240] D M3M38_04240 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_00830 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_04245 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M38_00835 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M38_02105 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D M3M38_02100 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D M3M38_02110 dihydroorotate oxidase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] D M3M38_03680 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D M3M38_03685 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D M3M38_00300 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D M3M38_03040 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D M3M38_00630 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D M3M38_01210 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D M3M38_01930 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M38_00840 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M38_05190 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D M3M38_01735 TIGR00282 family metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D M3M38_03625 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D M3M38_02720 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M38_02725 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D M3M38_07105 ComE operon protein 2 K01493 comEB; dCMP deaminase [EC:3.5.4.12] D M3M38_02670 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D M3M38_02825 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D M3M38_01955 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D M3M38_00665 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:fcli00250] D M3M38_01440 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D M3M38_05590 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D M3M38_05685 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D M3M38_00775 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M38_03640 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D M3M38_03630 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D M3M38_02105 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M38_04240 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_00830 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_04245 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M38_00835 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M38_05975 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M38_02375 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M38_05985 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:fcli00260] D M3M38_04135 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M38_04105 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M38_05645 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_01935 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_02840 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_03215 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_06500 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M38_06465 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D M3M38_06460 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:fcli00270] D M3M38_06470 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D M3M38_02735 mmuM; homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10] D M3M38_00145 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D M3M38_06985 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D M3M38_04810 pyridoxal phosphate-dependent aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D M3M38_06515 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D M3M38_04135 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M38_04105 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M38_01250 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D M3M38_06025 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_02730 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_06500 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:fcli00280] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_00115 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:fcli00290] D M3M38_01980 alsS; acetolactate synthase AlsS K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] C 00300 Lysine biosynthesis [PATH:fcli00300] D M3M38_04135 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M38_04105 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M38_04115 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M38_04110 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D M3M38_04125 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D M3M38_00230 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_02195 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_02210 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_04140 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D M3M38_04130 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M38_06020 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] D M3M38_06555 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] D M3M38_00110 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] D M3M38_04120 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D M3M38_05135 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D M3M38_01450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M38_03010 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:fcli00220] D M3M38_00775 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M38_06615 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D M3M38_05975 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M38_04240 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_00830 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M38_04245 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M38_00835 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] C 00330 Arginine and proline metabolism [PATH:fcli00330] D M3M38_03625 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D M3M38_05150 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D M3M38_03755 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D M3M38_05730 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00360 Phenylalanine metabolism D M3M38_02625 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] C 00380 Tryptophan metabolism [PATH:fcli00380] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_04185 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:fcli00400] D M3M38_05050 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D M3M38_05040 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D M3M38_05030 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D M3M38_06440 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D M3M38_06435 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D M3M38_06445 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D M3M38_06455 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D M3M38_06450 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D M3M38_06465 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D M3M38_06460 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D M3M38_05025 chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5] D M3M38_00175 ACT domain-containing protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D M3M38_05045 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:fcli00430] D M3M38_02420 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M38_01565 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:fcli00450] D M3M38_06470 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D M3M38_02520 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D M3M38_03115 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:fcli00460] D M3M38_05590 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D M3M38_05645 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_01935 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:fcli00470] D M3M38_03000 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M38_01855 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M38_05975 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M38_01635 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D M3M38_06920 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M38_01440 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D M3M38_04140 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D M3M38_04130 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:fcli00480] D M3M38_01250 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D M3M38_04280 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D M3M38_04850 NAD(P)/FAD-dependent oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D M3M38_04085 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D M3M38_04080 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D M3M38_06410 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis D M3M38_03865 glycosyltransferase K02840 waaB; UDP-D-galactose:(glucosyl)LPS alpha-1,6-D-galactosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:fcli00541] D M3M38_03940 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M38_03735 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D M3M38_03895 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D M3M38_05870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D M3M38_03070 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:fcli00550] D M3M38_01880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_03035 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_02400 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M38_01355 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D M3M38_06920 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M38_01450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M38_01855 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M38_03010 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D M3M38_00520 diacylglycerol kinase family protein K00887 dgkA; undecaprenol kinase [EC:2.7.1.66] D M3M38_00315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D M3M38_06915 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M38_06925 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D M3M38_00895 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D M3M38_01420 PBP1A family penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D M3M38_06910 penicillin-binding protein 2 K08724 pbpB; penicillin-binding protein 2B D M3M38_01200 penicillin-binding protein 2 K21465 pbpA; penicillin-binding protein A D M3M38_04555 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_03445 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_01960 Mur ligase family protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D M3M38_01965 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:fcli00552] D M3M38_03910 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D M3M38_02845 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D M3M38_05230 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D M3M38_06705 LTA synthase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D M3M38_06690 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D M3M38_06695 glycosyltransferase family 4 protein K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:fcli00730] D M3M38_03780 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D M3M38_03520 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D M3M38_06990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01815 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01810 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D M3M38_03770 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D M3M38_03775 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D M3M38_01055 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D M3M38_01045 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D M3M38_06225 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D M3M38_03785 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:fcli00740] D M3M38_02065 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D M3M38_02075 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D M3M38_02060 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D M3M38_02070 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D M3M38_00375 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D M3M38_03770 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D M3M38_06975 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism C 00760 Nicotinate and nicotinamide metabolism [PATH:fcli00760] D M3M38_02870 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D M3M38_01285 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D M3M38_02865 nadE; ammonia-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D M3M38_03125 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D M3M38_06860 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:fcli00770] D M3M38_01980 alsS; acetolactate synthase AlsS K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M38_05130 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D M3M38_05825 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D M3M38_01075 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D M3M38_07090 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D M3M38_01340 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D M3M38_03650 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] C 00780 Biotin metabolism [PATH:fcli00780] D M3M38_03580 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M38_03585 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M38_03570 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03605 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03550 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D M3M38_03545 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:fcli00790] D M3M38_00670 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D M3M38_01795 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D M3M38_02065 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] C 00670 One carbon pool by folate [PATH:fcli00670] D M3M38_00670 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D M3M38_06010 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D M3M38_01115 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D M3M38_05645 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_01935 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M38_05995 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D M3M38_06000 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M38_01065 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D M3M38_00665 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D M3M38_04000 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M38_01190 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:fcli00130] D M3M38_04800 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D M3M38_04795 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D M3M38_04790 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D M3M38_04785 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D M3M38_04650 o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D M3M38_04655 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D M3M38_04660 PaaI family thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D M3M38_04355 prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D M3M38_03805 NAD(P)H-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:fcli00900] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_00115 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D M3M38_03135 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D M3M38_00915 mvk; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D M3M38_00925 phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2] D M3M38_00920 mvaD; diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D M3M38_00930 fni; type 2 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D M3M38_01100 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M38_00315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures [PATH:fcli01054] D M3M38_01440 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides D M3M38_04800 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:fcli00261] D M3M38_04135 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M38_04105 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M38_04115 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M38_04110 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:fcli00521] D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D M3M38_03745 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D M3M38_01175 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D M3M38_05045 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D M3M38_06440 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D M3M38_06435 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D M3M38_03590 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M38_03585 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M38_03550 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D M3M38_03655 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_01015 acyl carrier protein K02078 acpP; acyl carrier protein D M3M38_03595 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D M3M38_00145 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:fcli00362] D M3M38_05085 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D M3M38_02625 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:fcli00625] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:fcli00626] D M3M38_03465 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M38_03460 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:fcli03020] D M3M38_06080 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M38_06085 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M38_06250 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M38_01080 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D M3M38_03045 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors D M3M38_05580 PD-(D/E)XK nuclease family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:fcli03010] D M3M38_00635 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D M3M38_00290 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D M3M38_06150 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D M3M38_01825 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D M3M38_06205 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D M3M38_04395 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D M3M38_06105 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D M3M38_06190 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D M3M38_06285 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D M3M38_06115 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D M3M38_06245 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D M3M38_06100 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D M3M38_06240 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D M3M38_06185 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D M3M38_07130 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D M3M38_00985 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D M3M38_06165 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D M3M38_04385 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D M3M38_06140 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D M3M38_07125 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D M3M38_00505 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D M3M38_02765 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D M3M38_06135 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D M3M38_06120 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D M3M38_06125 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D M3M38_06180 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D M3M38_06195 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D M3M38_02755 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D M3M38_04375 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D M3M38_02760 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D M3M38_02770 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D M3M38_06280 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D M3M38_06170 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D M3M38_06215 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D M3M38_06155 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D M3M38_06255 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D M3M38_06200 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D M3M38_00965 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D M3M38_01305 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D M3M38_01145 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D M3M38_06145 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D M3M38_06130 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D M3M38_06175 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D M3M38_01135 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D M3M38_01040 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D M3M38_06160 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D M3M38_06210 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D M3M38_03030 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D M3M38_01255 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D M3M38_01195 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M38_02785 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M38_04430 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D M3M38_01310 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D M3M38_06235 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D M3M38_04275 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_03195 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_06710 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_02925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04260 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04770 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_03190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_06725 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_02920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_02915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_03185 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04255 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04775 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_06730 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:fcli00970] D M3M38_04265 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M38_06720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M38_06060 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_06760 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_06495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_01150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_02480 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_01530 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_02910 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_03360 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_03365 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_01510 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_06790 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_06825 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_01485 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D M3M38_02040 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M38_02880 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M38_06815 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_01520 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_02045 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_01430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06750 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06800 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_01490 tRNA-His K14226 tRNA-His; tRNA His D M3M38_04270 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06715 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06805 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_06755 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_06040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_01460 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_01480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_02850 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_04350 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_05245 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06785 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06820 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06770 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06775 tRNA-Ile K14230 tRNA-Met; tRNA Met D M3M38_01505 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M38_06795 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M38_06065 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_06765 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_03470 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_06810 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_07215 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_01525 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_06780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_06745 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_03175 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_06045 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_02905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_01495 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D M3M38_01500 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M38_02885 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M38_01515 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_06030 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_06735 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_02815 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D M3M38_06355 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M38_06360 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D M3M38_06350 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D M3M38_01690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M38_00480 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D M3M38_02360 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D M3M38_00535 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D M3M38_00540 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D M3M38_01320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M38_05930 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M38_02810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M38_03115 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M38_01065 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D M3M38_01800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M38_00160 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M38_06965 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M38_02935 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M38_01425 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M38_00330 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M38_03955 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M38_01220 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M38_01215 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M38_05295 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M38_03145 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:fcli03060] D M3M38_06220 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_02325 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_02780 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M38_02440 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M38_01710 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M38_04440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_01240 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_02330 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_02555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_00990 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D M3M38_02700 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D M3M38_01000 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M38_04505 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D M3M38_00850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:fcli04122] D M3M38_06990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01815 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_07000 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D M3M38_01810 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:fcli03018] D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M38_02435 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D M3M38_03005 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M38_00620 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M38_05165 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D M3M38_01740 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D M3M38_07040 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M38_07135 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M38_00390 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M38_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M38_04755 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] B B 09124 Replication and repair C 03030 DNA replication [PATH:fcli03030] D M3M38_02405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M38_00570 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M38_00335 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D M3M38_02695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M38_02660 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M38_07120 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M38_04420 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M38_04370 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D M3M38_00545 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_00860 ribonuclease HI family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D M3M38_03510 ribonuclease H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D M3M38_00685 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:fcli03410] D M3M38_02425 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D M3M38_03490 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D M3M38_01345 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D M3M38_04520 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D M3M38_00495 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_07205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:fcli03420] D M3M38_02980 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D M3M38_05065 ATP-binding cassette domain-containing protein K03701 uvrA; excinuclease ABC subunit A D M3M38_02510 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M38_02515 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D M3M38_07180 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D M3M38_05820 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_06335 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M38_05580 PD-(D/E)XK nuclease family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:fcli03430] D M3M38_01730 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D M3M38_01670 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D M3M38_01725 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D M3M38_05820 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_06335 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_01110 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D M3M38_01105 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D M3M38_07205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_00570 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M38_00335 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D M3M38_04420 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M38_02695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M38_07120 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M38_02660 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M38_02405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:fcli03440] D M3M38_07205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_04410 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D M3M38_00530 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D M3M38_02685 recR; recombination mediator RecR K06187 recR; recombination protein RecR D M3M38_04685 recA; recombinase RecA K03553 recA; recombination protein RecA D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_01720 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D M3M38_01715 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D M3M38_01025 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D M3M38_07020 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D M3M38_00570 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M38_00335 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D M3M38_04420 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M38_02695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M38_07120 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M38_02660 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M38_02405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M38_01070 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:fcli02010] D M3M38_05545 glycine/betaine ABC transporter K02002 proX; glycine betaine/proline transport system substrate-binding protein D M3M38_05550 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D M3M38_05555 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D M3M38_03345 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D M3M38_03340 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D M3M38_03335 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D M3M38_03325 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M38_03330 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M38_05935 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D M3M38_05945 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M38_05950 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M38_05940 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D M3M38_04530 transporter substrate-binding domain-containing protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D M3M38_04535 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D M3M38_04540 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D M3M38_04525 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_00125 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D M3M38_00130 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D M3M38_00135 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_00755 ABC transporter substrate-binding protein/permease K17077 artQ; arginine/lysine/histidine transport system permease protein D M3M38_00760 ABC transporter substrate-binding protein/permease K17077 artQ; arginine/lysine/histidine transport system permease protein D M3M38_00765 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_04740 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_04805 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_06530 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_06535 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_00225 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_04820 ABC transporter permease K02072 metI; D-methionine transport system permease protein D M3M38_04815 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D M3M38_05370 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M38_05365 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M38_05360 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M38_05355 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D M3M38_05350 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M38_06605 ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D M3M38_04680 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D M3M38_04670 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_05185 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_06270 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_03475 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_05175 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_06260 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_05180 energy-coupling factor ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_06265 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_05650 ABC transporter ATP-binding protein/permease K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] D M3M38_04990 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D M3M38_04985 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D M3M38_00205 ATP-binding cassette domain-containing protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:fcli02060] D M3M38_06685 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr C 03070 Bacterial secretion system [PATH:fcli03070] D M3M38_02780 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M38_02440 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M38_06220 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_02325 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_01710 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M38_04440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_01240 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_02330 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_02555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_01000 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M38_00990 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:fcli02020] D M3M38_03350 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D M3M38_03345 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D M3M38_04340 walK; cell wall metabolism sensor histidine kinase WalK K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D M3M38_04345 yycF; response regulator YycF K07668 vicR; two-component system, OmpR family, response regulator VicR D M3M38_00790 KxYKxGKxW signal peptide domain-containing protein K00689 E2.4.1.5; dextransucrase [EC:2.4.1.5] D M3M38_04425 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M38_02750 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D M3M38_04470 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D M3M38_04475 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D M3M38_04480 citE; citrate (pro-3S)-lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D M3M38_04485 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D M3M38_04490 citX; citrate lyase holo-[acyl-carrier protein] synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61] D M3M38_04495 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D M3M38_04465 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D M3M38_00095 2-hydroxycarboxylate transporter family protein K11616 maeN; malate:Na+ symporter D M3M38_02580 CidA/LrgA family protein K05338 lrgA; holin-like protein D M3M38_02585 lrgB; antiholin-like protein LrgB K05339 lrgB; holin-like protein LrgB D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_04975 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D M3M38_04980 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D M3M38_03020 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:fcli02024] D M3M38_06515 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D M3M38_06440 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D M3M38_06435 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D M3M38_02075 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D M3M38_05370 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M38_05365 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M38_05360 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M38_05355 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D M3M38_05350 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M38_04930 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M38_04920 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M38_04925 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M38_04910 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M38_04915 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D M3M38_04440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_01240 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_02780 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M38_02440 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M38_06220 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_02325 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_01710 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M38_02330 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_02555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_01000 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M38_00990 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly [PATH:fcli02040] D M3M38_00125 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D M3M38_00550 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:fcli01501] D M3M38_05370 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M38_05365 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M38_05360 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M38_05355 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D M3M38_05350 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M38_05650 ABC transporter ATP-binding protein/permease K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] D M3M38_00895 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D M3M38_01420 PBP1A family penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] C 01502 Vancomycin resistance [PATH:fcli01502] D M3M38_01855 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M38_03000 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M38_03010 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D M3M38_06915 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M38_06925 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:fcli01503] D M3M38_00475 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D M3M38_02750 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:fcli01000] C 01001 Protein kinases [BR:fcli01001] D M3M38_04340 walK; cell wall metabolism sensor histidine kinase WalK K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins C 01002 Peptidases and inhibitors [BR:fcli01002] D M3M38_00850 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D M3M38_04510 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D M3M38_02835 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D M3M38_03965 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D M3M38_04745 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D M3M38_02190 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D M3M38_05985 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D M3M38_02375 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M38_05685 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D M3M38_02350 class A sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M38_06675 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-] D M3M38_00950 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-] D M3M38_00245 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D M3M38_04280 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D M3M38_05540 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D M3M38_00220 pepV; dipeptidase PepV K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-] D M3M38_00230 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_02195 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_02210 ArgE/DapE family deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M38_05660 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D M3M38_04120 N-acetyldiaminopimelate deacetylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] D M3M38_05525 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D M3M38_02950 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D M3M38_00325 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D M3M38_04555 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_03445 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_02490 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D M3M38_06015 Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11] D M3M38_07095 PDZ domain-containing protein K07177 K07177; Lon-like protease D M3M38_00260 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D M3M38_04505 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D M3M38_05730 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D M3M38_01185 rhomboid family intramembrane serine protease K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] C 01003 Glycosyltransferases [BR:fcli01003] D M3M38_06690 glycosyltransferase family 4 protein K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D M3M38_06695 glycosyltransferase family 4 protein K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-] D M3M38_00895 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D M3M38_01420 PBP1A family penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins [BR:fcli01005] D M3M38_03865 glycosyltransferase K02840 waaB; UDP-D-galactose:(glucosyl)LPS alpha-1,6-D-galactosyltransferase [EC:2.4.1.-] D M3M38_06645 glycosyltransferase family 2 protein K12999 rgpI; glucosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:fcli01011] D M3M38_01880 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_03035 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M38_02400 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M38_01355 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D M3M38_06920 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M38_01450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M38_01855 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M38_03000 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M38_01635 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D M3M38_06915 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M38_06925 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D M3M38_00895 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D M3M38_01420 PBP1A family penicillin-binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4] D M3M38_06910 penicillin-binding protein 2 K08724 pbpB; penicillin-binding protein 2B D M3M38_01200 penicillin-binding protein 2 K21465 pbpA; penicillin-binding protein A D M3M38_04555 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_03445 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D M3M38_02350 class A sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M38_00475 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:fcli01004] D M3M38_03590 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M38_03600 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D M3M38_03580 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M38_03585 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M38_03570 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03605 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D M3M38_03550 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D M3M38_05800 nitronate monooxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D M3M38_01020 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D M3M38_00720 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D M3M38_00275 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:fcli01008] D M3M38_01440 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:fcli01006] D M3M38_01100 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M38_00315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D M3M38_01160 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D M3M38_04355 prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] C 01007 Amino acid related enzymes [BR:fcli01007] D M3M38_02815 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D M3M38_05295 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M38_03145 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D M3M38_02810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M38_01425 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M38_03115 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M38_06965 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M38_01800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M38_00160 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M38_02935 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M38_00480 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D M3M38_02360 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D M3M38_03955 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M38_00535 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D M3M38_00540 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D M3M38_05930 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M38_00330 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M38_01320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M38_01690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M38_01220 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M38_01215 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M38_04810 pyridoxal phosphate-dependent aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] D M3M38_06020 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] D M3M38_06555 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] D M3M38_00110 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00841 patA; aminotransferase [EC:2.6.1.-] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:fcli00194] D M3M38_01890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D M3M38_01895 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D M3M38_01900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D M3M38_01905 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D M3M38_01910 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D M3M38_01915 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D M3M38_01920 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D M3M38_01925 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:fcli03000] D M3M38_01610 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M3M38_02875 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D M3M38_01455 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D M3M38_02900 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D M3M38_05575 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D M3M38_04150 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D M3M38_03545 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D M3M38_03075 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D M3M38_02605 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D M3M38_07245 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator D M3M38_03270 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D M3M38_00380 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D M3M38_03785 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D M3M38_06070 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D M3M38_00840 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M38_01335 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D M3M38_06895 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:fcli03021] D M3M38_05580 PD-(D/E)XK nuclease family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D M3M38_06250 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M38_06080 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M38_06085 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M38_03045 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D M3M38_01080 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D M3M38_00550 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D M3M38_02790 sigma-70 family RNA polymerase sigma factor K27000 sigH; RNA polymerase sigma-H factor D M3M38_00345 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D M3M38_01120 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D M3M38_02775 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D M3M38_01205 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA C 03019 Messenger RNA biogenesis [BR:fcli03019] D M3M38_01010 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M38_07040 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M38_07135 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M38_05165 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D M3M38_01740 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-] D M3M38_02435 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D M3M38_03005 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M38_01695 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D M3M38_00620 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M38_00390 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M38_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M38_04755 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D M3M38_02505 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:fcli03011] D M3M38_00635 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D M3M38_00290 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D M3M38_06150 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D M3M38_01825 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D M3M38_06205 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D M3M38_04395 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D M3M38_06105 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D M3M38_06190 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D M3M38_06285 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D M3M38_06115 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D M3M38_06245 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D M3M38_06100 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D M3M38_06240 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D M3M38_06185 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D M3M38_07130 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D M3M38_00985 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D M3M38_06165 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D M3M38_04385 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D M3M38_06140 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D M3M38_07125 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D M3M38_00505 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D M3M38_02765 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D M3M38_06135 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D M3M38_06120 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D M3M38_06125 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D M3M38_06180 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D M3M38_06195 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D M3M38_04375 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D M3M38_02760 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D M3M38_02770 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D M3M38_02755 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D M3M38_06280 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D M3M38_06170 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D M3M38_06215 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D M3M38_06155 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D M3M38_06255 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D M3M38_06200 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D M3M38_00965 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D M3M38_01305 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D M3M38_01145 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D M3M38_06145 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D M3M38_06130 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D M3M38_06175 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D M3M38_01135 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D M3M38_01040 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D M3M38_06160 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D M3M38_06210 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D M3M38_03030 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D M3M38_01255 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D M3M38_01195 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M38_02785 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M38_04430 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D M3M38_01310 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D M3M38_06235 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D M3M38_02915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_03185 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04255 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04775 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_06730 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04275 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_03195 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_06710 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_02925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04260 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04770 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_03190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_06725 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_02920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:fcli03009] D M3M38_01010 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M38_00525 era; GTPase Era K03595 era; GTPase D M3M38_07185 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D M3M38_00345 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D M3M38_01120 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D M3M38_02775 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D M3M38_03100 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D M3M38_01060 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D M3M38_02710 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D M3M38_07085 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D M3M38_00450 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D M3M38_03280 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D M3M38_06900 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D M3M38_02650 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D M3M38_01095 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D M3M38_02800 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D M3M38_04320 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D M3M38_02130 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D M3M38_06370 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D M3M38_00605 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D M3M38_05120 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D M3M38_05850 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D M3M38_06865 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D M3M38_00845 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D M3M38_02635 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D M3M38_00975 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D M3M38_00445 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D M3M38_01685 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D M3M38_02805 Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D M3M38_03005 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M38_01695 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D M3M38_01055 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D M3M38_00640 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D M3M38_00680 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A D M3M38_05810 hflX; GTPase HflX K03665 hflX; GTPase D M3M38_01295 yqeH; ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase D M3M38_01940 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D M3M38_00455 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D M3M38_00365 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D M3M38_00340 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D M3M38_04415 yaaA; S4 domain-containing protein YaaA K14761 rlbA; ribosome-associated protein D M3M38_01275 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D M3M38_00515 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D M3M38_01290 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D M3M38_03260 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D M3M38_01260 YceD family protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:fcli03016] D M3M38_07195 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D M3M38_00655 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D M3M38_00330 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M38_06965 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M38_00160 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M38_03115 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M38_01425 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M38_02935 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M38_00480 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D M3M38_01690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M38_02360 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D M3M38_01320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M38_05930 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M38_02810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M38_01800 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M38_03955 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M38_01220 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M38_01215 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M38_05295 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M38_03145 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D M3M38_00460 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D M3M38_01395 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D M3M38_01380 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D M3M38_06275 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D M3M38_00370 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D M3M38_06990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01815 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01940 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D M3M38_01160 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D M3M38_04450 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D M3M38_04455 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D M3M38_04435 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D M3M38_00875 rnpB; RNase P RNA component class B K01978 rnpB; M1 RNA D M3M38_00535 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D M3M38_00540 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D M3M38_02815 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D M3M38_05000 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D M3M38_02705 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D M3M38_02940 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D M3M38_00970 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D M3M38_00555 tRNA (adenine(22)-N(1))-methyltransferase TrmK K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D M3M38_06875 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D M3M38_01235 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D M3M38_07000 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D M3M38_01810 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D M3M38_02960 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D M3M38_02640 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D M3M38_02630 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D M3M38_02415 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D M3M38_01265 nucleotidyltransferase K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22] D M3M38_02435 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] C 03012 Translation factors [BR:fcli03012] D M3M38_00360 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D M3M38_01315 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D M3M38_02610 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D M3M38_00295 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D M3M38_07145 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M38_06110 fusA; elongation factor G K02355 fusA; elongation factor G D M3M38_01950 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D M3M38_00305 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D M3M38_01945 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D M3M38_02985 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D M3M38_06230 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D M3M38_01130 efp; elongation factor P K02356 efp; elongation factor P D M3M38_02550 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D M3M38_06670 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:fcli03110] D M3M38_06075 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D M3M38_06680 ATP-dependent Clp protease ATP-binding subunit K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE D M3M38_03915 ATP-dependent Clp protease ATP-binding subunit K04086 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL D M3M38_07155 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D M3M38_00390 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M38_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M38_00395 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D M3M38_02945 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D M3M38_00385 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D M3M38_04875 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D M3M38_02600 groES; co-chaperone GroES K04078 groES; chaperonin GroES D M3M38_02950 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D M3M38_01925 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D M3M38_01400 peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D M3M38_05270 trxA; thioredoxin K03671 TXN; thioredoxin D M3M38_01665 trxA; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:fcli04131] D M3M38_02475 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M38_02840 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_03215 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_00575 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:fcli03032] D M3M38_00860 ribonuclease HI family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D M3M38_03510 ribonuclease H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D M3M38_00645 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M38_04425 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M38_04370 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D M3M38_00545 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D M3M38_01330 DnaD domain protein K03346 dnaB; replication initiation and membrane attachment protein D M3M38_01325 dnaI; primosomal protein DnaI K11144 dnaI; primosomal protein DnaI D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_00570 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M38_00335 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D M3M38_04420 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M38_07120 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M38_02660 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M38_02405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M38_02695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M38_00685 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M38_04400 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M38_04405 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M38_00730 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D M3M38_00725 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D M3M38_00705 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:fcli03036] D M3M38_01010 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M38_00645 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M38_04425 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M38_01005 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D M3M38_00595 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D M3M38_00600 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D M3M38_06935 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D M3M38_02970 septum formation initiator family protein K13052 divIC; cell division protein DivIC D M3M38_06880 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D M3M38_01360 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D M3M38_07075 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW D M3M38_06940 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M38_01675 cell division protein ZapA K09888 zapA; cell division protein ZapA D M3M38_00475 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D M3M38_01820 ezrA; septation ring formation regulator EzrA K06286 ezrA; septation ring formation regulator D M3M38_01775 cell division inhibitor K03610 minC; septum site-determining protein MinC D M3M38_01770 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D M3M38_06960 DivIVA domain-containing protein K04074 divIVA; cell division initiation protein D M3M38_06945 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF D M3M38_01790 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_01875 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_01785 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D M3M38_01780 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D M3M38_01860 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D M3M38_03275 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M38_03270 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D M3M38_00730 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D M3M38_00725 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D M3M38_04455 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D M3M38_03280 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D M3M38_00710 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D M3M38_00585 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D M3M38_07160 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein D M3M38_02495 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:fcli03400] D M3M38_05655 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D M3M38_02425 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D M3M38_03490 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D M3M38_05580 PD-(D/E)XK nuclease family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D M3M38_02825 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D M3M38_03815 MGMT family protein K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D M3M38_04520 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D M3M38_01345 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D M3M38_00495 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D M3M38_07205 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D M3M38_06340 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M38_01350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M38_05065 ATP-binding cassette domain-containing protein K03701 uvrA; excinuclease ABC subunit A D M3M38_02510 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M38_02515 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D M3M38_07180 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D M3M38_05820 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_06335 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M38_06080 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M38_06085 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M38_06250 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M38_03045 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta D M3M38_01080 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D M3M38_02980 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D M3M38_01730 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D M3M38_01670 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D M3M38_01725 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D M3M38_01110 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D M3M38_01105 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D M3M38_00570 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M38_00335 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D M3M38_04420 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M38_07120 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M38_02660 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M38_02405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M38_02695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_07020 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D M3M38_04685 recA; recombinase RecA K03553 recA; recombination protein RecA D M3M38_01720 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D M3M38_01715 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D M3M38_01070 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D M3M38_02820 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D M3M38_04410 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D M3M38_01025 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D M3M38_00530 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D M3M38_02685 recR; recombination mediator RecR K06187 recR; recombination protein RecR D M3M38_01090 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D M3M38_00890 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U D M3M38_04575 addA; helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D M3M38_04570 PD-(D/E)XK nuclease family protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D M3M38_04400 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M38_04405 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M38_00705 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D M3M38_00645 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M38_00620 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M38_01705 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D M3M38_00420 Y-family DNA polymerase K03502 umuC; DNA polymerase V D M3M38_00260 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D M3M38_06660 recX; recombination regulator RecX K03565 recX; regulatory protein D M3M38_00910 exonuclease domain-containing protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D M3M38_02720 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M38_02725 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D M3M38_01700 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:fcli03029] D M3M38_00360 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D M3M38_01315 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D M3M38_00295 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D M3M38_07145 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M38_06110 fusA; elongation factor G K02355 fusA; elongation factor G D M3M38_00525 era; GTPase Era K03595 era; GTPase D M3M38_05295 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M38_00160 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M38_00480 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D M3M38_01425 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M38_06355 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M38_06360 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D M3M38_06350 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D M3M38_04390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M38_00390 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M38_00385 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D M3M38_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M38_02600 groES; co-chaperone GroES K04078 groES; chaperonin GroES D M3M38_00395 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D M3M38_06990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01815 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_04440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_01240 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:fcli02000] D M3M38_05650 ABC transporter ATP-binding protein/permease K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] D M3M38_04990 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D M3M38_04985 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D M3M38_00205 ATP-binding cassette domain-containing protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D M3M38_00660 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D M3M38_05545 glycine/betaine ABC transporter K02002 proX; glycine betaine/proline transport system substrate-binding protein D M3M38_05550 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D M3M38_05555 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D M3M38_05340 fetB; iron export ABC transporter permease subunit FetB K02069 STAR2; UDP-glucose/iron transport system permease protein D M3M38_05335 ATP-binding cassette domain-containing protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D M3M38_03345 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D M3M38_03340 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D M3M38_03335 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D M3M38_03325 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M38_03330 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M38_05935 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D M3M38_05945 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M38_05950 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M38_05940 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D M3M38_04530 transporter substrate-binding domain-containing protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D M3M38_04535 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D M3M38_04540 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D M3M38_04525 amino acid ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_00125 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein D M3M38_00130 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D M3M38_00135 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_00755 ABC transporter substrate-binding protein/permease K17077 artQ; arginine/lysine/histidine transport system permease protein D M3M38_00760 ABC transporter substrate-binding protein/permease K17077 artQ; arginine/lysine/histidine transport system permease protein D M3M38_00765 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D M3M38_04740 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_04805 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_06530 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_06535 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_00225 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M38_04820 ABC transporter permease K02072 metI; D-methionine transport system permease protein D M3M38_04815 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D M3M38_04090 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M38_04100 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M38_04095 ATP-binding cassette domain-containing protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D M3M38_05370 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M38_05365 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M38_05360 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M38_05355 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D M3M38_05350 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M38_04930 oligopeptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M38_04920 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M38_04925 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M38_04910 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M38_04915 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D M3M38_06605 ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein D M3M38_04680 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D M3M38_03485 ECF-type riboflavin transporter substrate-binding protein K16924 mtsT; energy-coupling factor transport system substrate-specific component D M3M38_04670 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_05185 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_06270 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_03475 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M38_05175 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_06260 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_05180 energy-coupling factor ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_06265 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_04675 energy-coupling factor ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_03480 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M38_04605 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein D M3M38_05775 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D M3M38_03085 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D M3M38_03090 ATP-binding cassette domain-containing protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D M3M38_03155 ABC-2 family transporter protein K25154 evrC; viologen exporter family transport system permease protein D M3M38_03160 ABC-2 family transporter protein K25155 evrB; viologen exporter family transport system permease protein D M3M38_03165 ATP-binding cassette domain-containing protein K25156 evrA; viologen exporter family transport system ATP-binding protein D M3M38_01385 ABC transporter permease K25157 ecsB; ABC-2 type transport system permease protein D M3M38_01390 ABC transporter ATP-binding protein K25158 ecsA; ABC-2 type transport system ATP-binding protein D M3M38_06610 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M38_00195 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M38_00800 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M38_00190 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M38_03375 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D M3M38_03370 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D M3M38_05020 MFS transporter K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter D M3M38_04285 MFS transporter K08153 blt; MFS transporter, DHA1 family, multidrug resistance protein D M3M38_03025 multidrug efflux MFS transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D M3M38_06685 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D M3M38_00075 ion channel K10716 kch; voltage-gated potassium channel D M3M38_05405 ammonium transporter K03320 amt; ammonium transporter, Amt family D M3M38_03170 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D M3M38_01625 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D M3M38_05255 magnesium transporter CorA family protein K03284 corA; magnesium transporter D M3M38_01465 CrcB family protein K06199 crcB; fluoride exporter D M3M38_01470 CrcB family protein K06199 crcB; fluoride exporter D M3M38_00170 TMEM175 family protein K24915 TMEM175; TMEM175 potassium channel family protein D M3M38_01475 TMEM175 family protein K24915 TMEM175; TMEM175 potassium channel family protein D M3M38_04870 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M38_02580 CidA/LrgA family protein K05338 lrgA; holin-like protein D M3M38_04585 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter D M3M38_05920 amino acid permease K11733 lysP; lysine-specific permease D M3M38_03700 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D M3M38_05865 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D M3M38_05310 GRP family sugar transporter K06216 rbsU; putative ribose uptake protein D M3M38_06590 gluconate:H+ symporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D M3M38_04250 cation:dicarboxylase symporter family transporter K11102 gltP; proton glutamate symport protein D M3M38_05275 nhaC; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D M3M38_03970 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D M3M38_05735 cation:proton antiporter K26730 napA; Na+:H+ antiporter D M3M38_00120 NCS2 family nucleobase:cation symporter K02824 uraA; uracil permease D M3M38_04560 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D M3M38_03295 NupC/NupG family nucleoside CNT transporter K16323 yxjA; purine nucleoside transport protein D M3M38_03950 chloride channel protein K03281 clcA; chloride channel protein, CIC family D M3M38_05005 Nramp family divalent metal transporter K03322 mntH; manganese transport protein D M3M38_04955 AEC family transporter K24180 mleP; malate permease and related proteins D M3M38_06580 AEC family transporter K24180 mleP; malate permease and related proteins D M3M38_04695 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D M3M38_03240 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D M3M38_03235 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D M3M38_04700 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D M3M38_00610 ECF transporter S component K23675 fmnP; riboflavin transporter D M3M38_05560 VIT family protein K22736 VIT; vacuolar iron transporter family protein D M3M38_05565 VIT family protein K22736 VIT; vacuolar iron transporter family protein D M3M38_07075 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW D M3M38_02930 pnuC; nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter C 02044 Secretion system [BR:fcli02044] D M3M38_06950 YggT family protein K02221 yggT; YggT family protein D M3M38_07100 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA D M3M38_07105 ComE operon protein 2 K01493 comEB; dCMP deaminase [EC:3.5.4.12] D M3M38_07115 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D M3M38_02570 DNA/RNA helicase K02240 comFA; competence protein ComFA D M3M38_02565 ComF family protein K02242 comFC; competence protein ComFC D M3M38_01600 tadA; Flp pilus assembly complex ATPase component TadA K02243 comGA; competence protein ComGA D M3M38_01595 type II secretion system F family protein K02244 comGB; competence protein ComGB D M3M38_01590 prepilin-type N-terminal cleavage/methylation domain-containing protein K02245 comGC; competence protein ComGC D M3M38_01585 hypothetical protein K02246 comGD; competence protein ComGD D M3M38_02330 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_02555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M38_02780 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M38_02440 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M38_06220 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_02325 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M38_00990 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D M3M38_01000 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M38_01710 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M38_04440 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_01240 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M38_02320 asp1; accessory Sec system protein Asp1 K12268 asp1; accessory secretory protein Asp1 D M3M38_02315 asp2; accessory Sec system protein Asp2 K12269 asp2; accessory secretory protein Asp2 C 02042 Bacterial toxins [BR:fcli02042] D M3M38_04870 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M38_05395 hemolysin III family protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:fcli02022] D M3M38_03350 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D M3M38_04340 walK; cell wall metabolism sensor histidine kinase WalK K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D M3M38_04345 yycF; response regulator YycF K07668 vicR; two-component system, OmpR family, response regulator VicR C 02035 Bacterial motility proteins [BR:fcli02035] D M3M38_00125 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:fcli04812] D M3M38_01790 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_01875 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_06940 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M38_06935 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D M3M38_01775 cell division inhibitor K03610 minC; septum site-determining protein MinC D M3M38_01770 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D M3M38_03275 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M38_03270 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:fcli04147] D M3M38_02460 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M38_02475 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M38_02470 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M38_00575 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M38_02595 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M38_00390 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M38_02120 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M38_03960 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M38_07145 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M38_01395 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D M3M38_06025 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_02730 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D M3M38_04715 thiolase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M38_06225 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D M3M38_07210 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D M3M38_00775 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M38_00945 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D M3M38_02895 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M38_06500 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M38_06000 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M38_04080 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D M3M38_02465 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M38_02840 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M38_03215 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:fcli02048] D M3M38_03430 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D M3M38_03440 cas9; type II CRISPR RNA-guided endonuclease Cas9 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-] D M3M38_05485 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D M3M38_05520 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D M3M38_01570 class I SAM-dependent methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D M3M38_04225 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D M3M38_02990 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D M3M38_06940 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M38_01790 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_01875 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D M3M38_00730 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D M3M38_00725 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D M3M38_06990 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M38_01815 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:fcli01504] D M3M38_06635 AAC(3) family N-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81] D M3M38_00205 ATP-binding cassette domain-containing protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D M3M38_02750 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D M3M38_05650 ABC transporter ATP-binding protein/permease K18104 abcA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:fcli03100] D M3M38_04265 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M38_06720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M38_06060 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_06760 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_06495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_01150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_02480 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M38_01530 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_02910 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_03360 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_03365 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M38_01510 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_06790 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_06825 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M38_01485 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D M3M38_02040 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M38_02880 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M38_06815 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_01520 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_02045 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M38_01430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06750 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_06800 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M38_01490 tRNA-His K14226 tRNA-His; tRNA His D M3M38_04270 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06715 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06805 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M38_06055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_06755 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_06040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_01460 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_01480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_02850 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M38_04350 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_05245 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M38_06785 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06820 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06770 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M38_06775 tRNA-Ile K14230 tRNA-Met; tRNA Met D M3M38_01505 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M38_06795 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M38_06065 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_06765 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_03470 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M38_06810 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_07215 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_01525 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_06780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M38_06745 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_03175 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_06045 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_02905 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M38_01495 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D M3M38_01500 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M38_02885 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M38_01515 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_06030 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_06735 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M38_04275 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_03195 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_06710 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_02925 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M38_04260 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04770 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_03190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_06725 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_02920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_04730 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M38_02915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_03185 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04255 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04775 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_04735 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_06730 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M38_02700 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D M3M38_00875 rnpB; RNase P RNA component class B K01978 rnpB; M1 RNA D M3M38_02140 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D M3M38_03835 lactate dehydrogenase K25634 hgdH; 2-oxoglutarate reductase [EC:1.1.1.399] D M3M38_03840 lactate dehydrogenase K25634 hgdH; 2-oxoglutarate reductase [EC:1.1.1.399] D M3M38_06575 lactate dehydrogenase K25634 hgdH; 2-oxoglutarate reductase [EC:1.1.1.399] D M3M38_04840 aldo/keto reductase K06607 iolS; myo-inositol catabolism protein IolS [EC:1.1.1.-] D M3M38_07030 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D M3M38_00745 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D M3M38_00740 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D M3M38_00105 FAD-dependent oxidoreductase K05910 npr; NADH peroxidase [EC:1.11.1.1] D M3M38_04890 manganese catalase family protein K07217 ydbD; manganese catalase [EC:1.11.1.6] D M3M38_04460 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D M3M38_01805 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D M3M38_05220 NAD(P)/FAD-dependent oxidoreductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D M3M38_03230 cyclopropane-fatty-acyl-phospholipid synthase family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D M3M38_00870 class I SAM-dependent RNA methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D M3M38_02200 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D M3M38_03505 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D M3M38_02530 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D M3M38_01030 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D M3M38_00500 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D M3M38_02390 cdaA; diadenylate cyclase CdaA K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D M3M38_02535 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D M3M38_03635 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D M3M38_05300 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D M3M38_01300 YqeG family HAD IIIA-type phosphatase K07015 yqeG; putative phosphatase [EC:3.1.3.-] D M3M38_04380 DHH family phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D M3M38_03110 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D M3M38_03105 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D M3M38_00060 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D M3M38_07055 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D M3M38_03845 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53] D M3M38_00215 NAD(P)H-hydrate dehydratase K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136] D M3M38_05400 aspartate aminotransferase family protein K20708 E5.1.1.21; isoleucine 2-epimerase [EC:5.1.1.21] D M3M38_01445 carboxylate--amine ligase K17810 asl; D-aspartate ligase [EC:6.3.1.12] D M3M38_05835 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D M3M38_04880 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] C 99981 Carbohydrate metabolism C 99982 Energy metabolism C 99983 Lipid metabolism D M3M38_04035 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D M3M38_00810 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism D M3M38_04860 nrdI; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction D M3M38_02095 DNA/RNA non-specific endonuclease K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism C 99986 Glycan metabolism D M3M38_06700 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D M3M38_00590 riboflavin biosynthesis protein RibT K02859 ribT; riboflavin biosynthesis RibT protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D M3M38_06970 cold shock domain-containing protein K03704 cspA; cold shock protein D M3M38_03535 cold-shock protein K03704 cspA; cold shock protein D M3M38_05195 spx; transcriptional regulator Spx K16509 spxA; regulatory protein spx D M3M38_02860 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D M3M38_02965 S1 domain-containing RNA-binding protein K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D M3M38_07150 tig; trigger factor K03545 tig; trigger factor D M3M38_02430 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D M3M38_02715 nrdH; glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH D M3M38_06840 adaptor protein MecA K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D M3M38_00285 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D M3M38_00690 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D M3M38_00900 DnaD domain protein K02086 dnaD; DNA replication protein D M3M38_05060 replication-associated recombination protein A K07478 ycaJ; putative ATPase D M3M38_01835 replication-associated recombination protein A K07478 ycaJ; putative ATPase C 99979 Viral proteins C 99998 Others D M3M38_02690 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D M3M38_05785 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D M3M38_01560 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D M3M38_04690 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_05250 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_05375 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_05805 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_05910 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_01655 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M38_03500 BCCT family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D M3M38_02890 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D M3M38_02090 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D M3M38_04600 cytosine permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D M3M38_04445 protein jag K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins D M3M38_07070 typA; translational GTPase TypA K06207 typA; GTP-binding protein D M3M38_00510 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D M3M38_06480 hypothetical protein K07273 acm; lysozyme C 99994 Others D M3M38_03320 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D M3M38_06870 hypothetical protein K06201 cutC; copper homeostasis protein B B 09194 Poorly characterized C 99996 General function prediction only D M3M38_04645 GNAT family N-acetyltransferase K02348 elaA; ElaA protein D M3M38_06845 hypothetical protein K06198 coiA; competence protein CoiA D M3M38_01365 DUF4479 and tRNA-binding domain-containing protein K06878 K06878; tRNA-binding protein D M3M38_03720 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D M3M38_06650 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D M3M38_03405 LemA family protein K03744 lemA; LemA protein D M3M38_02855 SprT family protein K03095 sprL; SprT-like protein D M3M38_01535 VTT domain-containing protein K03975 dedA; membrane-associated protein D M3M38_02540 phage holin family protein K08972 K08972; putative membrane protein C 99997 Function unknown D M3M38_03055 HD domain-containing protein K06885 K06885; uncharacterized protein D M3M38_03945 alpha/beta hydrolase K06889 K06889; uncharacterized protein D M3M38_07165 alpha/beta hydrolase K06889 K06889; uncharacterized protein D M3M38_01245 Bax inhibitor-1 family protein K06890 K06890; uncharacterized protein D M3M38_04960 HD domain-containing protein K06950 K06950; uncharacterized protein D M3M38_04965 HD domain-containing protein K06950 K06950; uncharacterized protein D M3M38_01230 hydrolase K06950 K06950; uncharacterized protein D M3M38_00980 KH domain-containing protein K06960 K06960; uncharacterized protein D M3M38_02795 NYN domain-containing protein K06962 K06962; uncharacterized protein D M3M38_03740 N-acetyltransferase K06975 K06975; uncharacterized protein D M3M38_05205 PTS sugar transporter subunit IIC K07035 K07035; uncharacterized protein D M3M38_06560 PTS sugar transporter subunit IIC K07035 K07035; uncharacterized protein D M3M38_03830 nitroreductase family protein K07078 K07078; uncharacterized protein D M3M38_04295 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D M3M38_05895 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D M3M38_03420 NAD(P)H-binding protein K07118 K07118; uncharacterized protein D M3M38_01870 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D M3M38_03765 DUF2075 domain-containing protein K09384 K09384; uncharacterized protein D M3M38_00995 putative DNA-binding protein K09787 K09787; uncharacterized protein D M3M38_00580 S1-like domain-containing RNA-binding protein K00243 K00243; uncharacterized protein D M3M38_00270 YneF family protein K09976 K09976; uncharacterized protein D M3M38_01140 ribosomal-processing cysteine protease Prp K07584 ysxB; uncharacterized protein D M3M38_00350 YlxR family protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 24, 2024