+E Replication protein KO
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DNA Replication Proteins - Fragilariopsis cylindrus
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AEukaryotic type
B DNA Replication Initiation Factors
C pre-RC (pre-replication complex)
D FRACYDRAFT_186231 hypothetical protein K02604 ORC2; origin recognition complex subunit 2
D FRACYDRAFT_204899 MCM-domain-containing protein K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3]
D FRACYDRAFT_264318 MCM-domain-containing protein K02541 MCM3; DNA replication licensing factor MCM3 [EC:5.6.2.3]
D FRACYDRAFT_146869 MCM-domain-containing protein K02212 MCM4; DNA replication licensing factor MCM4 [EC:5.6.2.3]
D FRACYDRAFT_224321 MCM-domain-containing protein K02209 MCM5; DNA replication licensing factor MCM5 [EC:5.6.2.3]
D FRACYDRAFT_193082 MCM-domain-containing protein K02542 MCM6; DNA replication licensing factor MCM6 [EC:5.6.2.3]
D FRACYDRAFT_184349 MCM-domain-containing protein K02210 MCM7; DNA replication licensing factor MCM7 [EC:5.6.2.3]
C CDK (cyclin dependent kinase)
D FRACYDRAFT_187415 CycA/B; Cyclin_N-domain-containing protein K06627 CCNA; cyclin-A
C DDK (Dbf-4 dependent kinase)
C GINS complex
D FRACYDRAFT_256520 hypothetical protein K10732 GINS1; GINS complex subunit 1
D FRACYDRAFT_238177 hypothetical protein K10733 GINS2; GINS complex subunit 2
C Other initiation factors
D FRACYDRAFT_165714 CDC45-like protein K06628 CDC45; cell division control protein 45
D FRACYDRAFT_189062 MCM-domain-containing protein K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
D FRACYDRAFT_156569 MCM-domain-containing protein K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
D FRACYDRAFT_240198 hypothetical protein K10736 MCM10; minichromosome maintenance protein 10
D FRACYDRAFT_259815 hypothetical protein K28390 MCMBP; minichromosome maintenance complex-binding protein
B DNA Replication Elongation Factors
C DNA polymerase alpha / primase complex
D FRACYDRAFT_135771 DNA_pol_B-domain-containing protein K02320 POLA1; DNA polymerase alpha subunit A [EC:2.7.7.7]
D FRACYDRAFT_188719 prim-pol domain-containing protein K02684 PRI1; DNA primase small subunit [EC:2.7.7.102]
D FRACYDRAFT_235156 DNA_primase_lrg-domain-containing protein K02685 PRI2; DNA primase large subunit
D FRACYDRAFT_237916 DNA_primase_lrg-domain-containing protein K02685 PRI2; DNA primase large subunit
C DNA polymerase epsilon complex
D FRACYDRAFT_189483 DNA/RNA polymerase K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
D FRACYDRAFT_235118 PolE; DNA_pol_E_B-domain-containing protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
D FRACYDRAFT_164395 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
C DNA polymerase delta complex
D FRACYDRAFT_180847 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
D FRACYDRAFT_138278 DNA_pol_E_B-domain-containing protein K02328 POLD2; DNA polymerase delta subunit 2
C DNA polymerase gamma complex (mitochondrial)
C RPA (replication protein A)
D FRACYDRAFT_211019 RPA1a; replication factor-a protein K07466 RFA1; replication factor A1
D FRACYDRAFT_209072 Rpa2a; replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
C RFC (replication factor C)
D FRACYDRAFT_178496 Rfc1a; RFC1-domain-containing protein K10754 RFC1; replication factor C subunit 1
D FRACYDRAFT_196471 Rfc4a; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_207120 Rfc2; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_187556 Rfc3a; replication factor C 3 K10756 RFC3_5; replication factor C subunit 3/5
D FRACYDRAFT_274639 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C RNase H
D FRACYDRAFT_240250 RNase_HII-domain-containing protein K10743 RNASEH2A; ribonuclease H2 subunit A [EC:3.1.26.4]
D FRACYDRAFT_248345 hypothetical protein K10744 RNASEH2B; ribonuclease H2 subunit B
C Other elongation factors
D FRACYDRAFT_191550 PCNA1; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D FRACYDRAFT_188759 hypothetical protein K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
D FRACYDRAFT_206746 FEN-1; PIN domain-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D FRACYDRAFT_261553 EXO1_1; PIN domain-like protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
D FRACYDRAFT_225386 Lig1_a; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DNA Replication Termination Factors
C DNA methylation enzymes
D FRACYDRAFT_240634 S-adenosyl-L-methionine-dependent methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D FRACYDRAFT_250079 S-adenosyl-L-methionine-dependent methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Prevention of re-replication factors
D FRACYDRAFT_151559 CycB1; cyclin K21777 CCNB; G2/mitotic-specific cyclin-B, other
D FRACYDRAFT_153925 CycB2; Cyclin_N-domain-containing protein K21777 CCNB; G2/mitotic-specific cyclin-B, other
D FRACYDRAFT_166572 DSCYC5a; cyclin-like protein K21777 CCNB; G2/mitotic-specific cyclin-B, other
D FRACYDRAFT_208293 Cyclin_B3; Cyclin_N-domain-containing protein K21777 CCNB; G2/mitotic-specific cyclin-B, other
D FRACYDRAFT_259461 CycB1;2; Cyclin_N-domain-containing protein K21777 CCNB; G2/mitotic-specific cyclin-B, other
C Telomere proteins
D Shelterin complex
D TERB1-TERB2-MAJIN complex
D CST complex (animals)
D CST complex (yeast)
D RIF proteins
D SIR proteins
C Telomerase complex (animals)
D Dyskerin complex
E FRACYDRAFT_267895 Gar1-domain-containing protein K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
E FRACYDRAFT_212652 L30e-like protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
E FRACYDRAFT_262040 Dkc1 protein K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
C Telomerase complex (fungi)
D Sm core complex
E FRACYDRAFT_215974 Sm-like ribonucleo protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E FRACYDRAFT_191588 putative small nuclear ribonucleo protein Sm D1 K11087 SNRPD1; small nuclear ribonucleoprotein D1
E FRACYDRAFT_165997 small nuclear ribonucleo protein D2 polypeptide 16.5kDa, isoform CRA_b K11096 SNRPD2; small nuclear ribonucleoprotein D2
E FRACYDRAFT_180644 Sm-like ribonucleo protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E FRACYDRAFT_210287 Sm-like ribonucleo protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E FRACYDRAFT_186737 briggsae CBR-SNR-6 protein K11097 SNRPE; small nuclear ribonucleoprotein E
E FRACYDRAFT_268647 putative membrane-associated protein K11098 SNRPF; small nuclear ribonucleoprotein F
E FRACYDRAFT_178347 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C ELG1-RFC complex
D FRACYDRAFT_196471 Rfc4a; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_207120 Rfc2; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_187556 Rfc3a; replication factor C 3 K10756 RFC3_5; replication factor C subunit 3/5
D FRACYDRAFT_274639 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C MRN complex
D FRACYDRAFT_275781 Mre11a; DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
C Other termination factors
D FRACYDRAFT_194899 ATM; kinase-like protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D FRACYDRAFT_208467 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D FRACYDRAFT_181233 hypothetical protein K11135 PINX1; Pin2-interacting protein X1
D FRACYDRAFT_254173 hypothetical protein K11135 PINX1; Pin2-interacting protein X1
D FRACYDRAFT_136107 DNA repair helicase K11136 RTEL1; regulator of telomere elongation helicase 1 [EC:5.6.2.3]
D FRACYDRAFT_232623 hypothetical protein K11137 TELO2; telomere length regulation protein
D FRACYDRAFT_138445 WD40 repeat-like protein K23314 WRAP53; telomerase Cajal body protein 1
B DNA Topoisomerases
C FRACYDRAFT_225326 Top1_1; Topoisom_I_N-domain-containing protein K03163 TOP1; DNA topoisomerase I [EC:5.6.2.1]
C FRACYDRAFT_145893 Top2a_1; type II DNA topoisomerase K03164 TOP2; DNA topoisomerase II [EC:5.6.2.2]
C FRACYDRAFT_185561 Top2b_1; type II DNA topoisomerase K03164 TOP2; DNA topoisomerase II [EC:5.6.2.2]
C FRACYDRAFT_247872 Top3a_1; prokaryotic type I DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
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AProkaryotic type
B DNA Replication Initiation Factors
C Initiation factors (bacterial)
C Initiation factors (archaeal)
B DNA Replication Elongation Factors
C Elongation factors (bacterial)
D DNA polymerase III holoenzyme
D RNase H
E FRACYDRAFT_181968 ribonuclease HII/HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Other elongation factors
E FRACYDRAFT_225788 DNA/RNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C Elongation factors (archaeal)
D B-family DNA polymerases
D D-family DNA polymerases
D RNase H
E FRACYDRAFT_181968 ribonuclease HII/HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RFC (replication factor C)
D Other elongation factors
E FRACYDRAFT_188759 hypothetical protein K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
E FRACYDRAFT_206746 FEN-1; PIN domain-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E FRACYDRAFT_225386 Lig1_a; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DNA Replication Termination Factors
C Terminus site-binding protein
C DNA methylation enzymes
C Prevention of re-replication factors
B DNA Topoisomerases
C FRACYDRAFT_265863 DNA gyrase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
C FRACYDRAFT_208537 Top6b; topo-VIb_trans-domain-containing protein K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 27, 2025