+F Repair protein KO
#
DNA Repair and Recombination Proteins - Fragilariopsis cylindrus
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D FRACYDRAFT_169804 Sec63-domain-containing protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D FRACYDRAFT_158036 CPD3a; FAD_binding_7-domain-containing protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E FRACYDRAFT_208373 UngB; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FRACYDRAFT_227821 UngA_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FRACYDRAFT_187316 MutY_a; DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E FRACYDRAFT_186086 Ogg_a; DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_225447 hypothetical protein K10569 NEIL3; endonuclease VIII-like 3 [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_161186 EndoIII-related_a; DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_160865 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_162373 EndoIIIa; DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
F FRACYDRAFT_180847 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F FRACYDRAFT_138278 DNA_pol_E_B-domain-containing protein K02328 POLD2; DNA polymerase delta subunit 2
E DNA polymerase epsilon complex
F FRACYDRAFT_189483 DNA/RNA polymerase K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F FRACYDRAFT_235118 PolE; DNA_pol_E_B-domain-containing protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F FRACYDRAFT_164395 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E FRACYDRAFT_191550 PCNA1; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E FRACYDRAFT_206746 FEN-1; PIN domain-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E FRACYDRAFT_225386 Lig1_a; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E FRACYDRAFT_190809 phospholipase D/nuclease K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E FRACYDRAFT_207777 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F FRACYDRAFT_227534 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F FRACYDRAFT_208711 Rad23B; XPC-binding-domain-containing protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F FRACYDRAFT_206499 ring-box protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F FRACYDRAFT_135945 DDB1_1; CPSF_A-domain-containing protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F FRACYDRAFT_209064 SNF2_N-domain-containing protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F FRACYDRAFT_183150 RNA_pol; putative DNA-dependent RNA polymerase K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F FRACYDRAFT_174108 RNA polymerase II second largest subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F FRACYDRAFT_267685 insert subdomain of RNA polymerase alpha subunit K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F FRACYDRAFT_275138 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F FRACYDRAFT_271383 RPB5 subunit of DNA-directed RNA polymerase K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F FRACYDRAFT_194432 RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F FRACYDRAFT_181715 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F FRACYDRAFT_268152 RNA polymerase K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F FRACYDRAFT_177662 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F FRACYDRAFT_193447 DNA-directed RNA polymerases I, II, and III subunit rpabc5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F FRACYDRAFT_224004 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F FRACYDRAFT_206499 ring-box protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F FRACYDRAFT_135945 DDB1_1; CPSF_A-domain-containing protein K10610 DDB1; DNA damage-binding protein 1
F FRACYDRAFT_232933 CSA; WD40 repeat-like protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F FRACYDRAFT_181318 CSB; SNF2_N-domain-containing protein K10841 ERCC6; DNA excision repair protein ERCC-6
F FRACYDRAFT_165256 Elf1-domain-containing protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E FRACYDRAFT_177977 XPB_1; DNA excision repair cross-complementing protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E FRACYDRAFT_191543 XPD_1; DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E FRACYDRAFT_178730 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E FRACYDRAFT_138893 Ssl1-domain-containing protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E FRACYDRAFT_193684 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E FRACYDRAFT_182101 Tfb2-domain-containing protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E FRACYDRAFT_237737 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E FRACYDRAFT_226143 CDKD1; cell division protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E FRACYDRAFT_217329 hypothetical protein K06634 CCNH; cyclin H
E FRACYDRAFT_267725 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E FRACYDRAFT_211019 RPA1a; replication factor-a protein K07466 RFA1; replication factor A1
E FRACYDRAFT_209072 Rpa2a; replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
D Other NER factors
E FRACYDRAFT_181618 ERCC1; DNA repair protein rad10 K10849 ERCC1; DNA excision repair protein ERCC-1
E FRACYDRAFT_208467 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E FRACYDRAFT_225386 Lig1_a; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E FRACYDRAFT_169868 Cullin-domain-containing protein K03869 CUL3; cullin 3
E FRACYDRAFT_218071 putative transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E FRACYDRAFT_157228 MSH2_a; MutS_V-domain-containing protein K08735 MSH2; DNA mismatch repair protein MSH2
E FRACYDRAFT_212924 MSH6; MutS_V-domain-containing protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E FRACYDRAFT_136590 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E FRACYDRAFT_212051 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E FRACYDRAFT_180847 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E FRACYDRAFT_138278 DNA_pol_E_B-domain-containing protein K02328 POLD2; DNA polymerase delta subunit 2
D RPA (replication factor A)
E FRACYDRAFT_211019 RPA1a; replication factor-a protein K07466 RFA1; replication factor A1
E FRACYDRAFT_209072 Rpa2a; replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
D RFC (replication factor C)
E FRACYDRAFT_178496 Rfc1a; RFC1-domain-containing protein K10754 RFC1; replication factor C subunit 1
E FRACYDRAFT_196471 Rfc4a; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
E FRACYDRAFT_207120 Rfc2; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
E FRACYDRAFT_274639 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E FRACYDRAFT_187556 Rfc3a; replication factor C 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E FRACYDRAFT_191550 PCNA1; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E FRACYDRAFT_261553 EXO1_1; PIN domain-like protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E FRACYDRAFT_225386 Lig1_a; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E FRACYDRAFT_275781 Mre11a; DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
E FRACYDRAFT_236571 hypothetical protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D BRCA1-C complex
E FRACYDRAFT_275781 Mre11a; DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E FRACYDRAFT_183976 BRCA2a; nucleic acid-binding protein K08775 BRCA2; breast cancer 2 susceptibility protein
D RecA family proteins
E FRACYDRAFT_247629 hypothetical protein K10870 RAD51L2; RAD51-like protein 2
D Rad52 family proteins
E FRACYDRAFT_183986 Rad52a; dsRNA-binding domain-like protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E FRACYDRAFT_259049 RAD54; putative DNA repair and recombination protein RAD54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E FRACYDRAFT_194223 Rad54_homologA; SNF2_N-domain-containing protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E FRACYDRAFT_157933 DHC1; ATP-dependent DNA helicase K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E FRACYDRAFT_247872 Top3a_1; prokaryotic type I DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D RPA (replication factor A)
E FRACYDRAFT_211019 RPA1a; replication factor-a protein K07466 RFA1; replication factor A1
E FRACYDRAFT_209072 Rpa2a; replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
D Protein phosphatase 4
E FRACYDRAFT_226787 Metallo-dependent phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E FRACYDRAFT_241726 ARM repeat-containing protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E FRACYDRAFT_209177 DUF625-domain-containing protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E FRACYDRAFT_193562 P-loop containing nucleoside triphosphate hydrolase protein K22803 SMC5; structural maintenance of chromosomes protein 5
E FRACYDRAFT_168857 P-loop containing nucleoside triphosphate hydrolase protein K22804 SMC6; structural maintenance of chromosomes protein 6
E FRACYDRAFT_232273 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E FRACYDRAFT_241253 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E FRACYDRAFT_149334 hypothetical protein K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E FRACYDRAFT_251731 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E FRACYDRAFT_136790 GEN-1; PIN domain-like protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E FRACYDRAFT_146775 hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E FRACYDRAFT_160431 AAA-domain-containing protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E FRACYDRAFT_138383 AAA-domain-containing protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E FRACYDRAFT_233219 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E FRACYDRAFT_235894 Ku70; SPOC domain-like protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E FRACYDRAFT_240046 Ku80; SPOC domain-like protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E FRACYDRAFT_275781 Mre11a; DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
E FRACYDRAFT_233304 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E FRACYDRAFT_247872 Top3a_1; prokaryotic type I DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D FANCD2-I complex
D Downstream FA components
E FRACYDRAFT_183976 BRCA2a; nucleic acid-binding protein K08775 BRCA2; breast cancer 2 susceptibility protein
E FRACYDRAFT_236571 hypothetical protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E FRACYDRAFT_247629 hypothetical protein K10870 RAD51L2; RAD51-like protein 2
E FRACYDRAFT_232623 hypothetical protein K11137 TELO2; telomere length regulation protein
C Other DSBR factors
D Protein phosphatase 6
E FRACYDRAFT_224152 Metallo-dependent phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E FRACYDRAFT_138445 WD40 repeat-like protein K23314 WRAP53; telomerase Cajal body protein 1
E FRACYDRAFT_237847 WD40 repeat-like protein K24752 WDR70; WD repeat-containing protein 70
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D FRACYDRAFT_249724 PolI-a; DNA/RNA polymerase K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D FRACYDRAFT_194538 PolKa; DNA/RNA polymerase K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D FRACYDRAFT_170374 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D FRACYDRAFT_205435 PolZ; DNA/RNA polymerase K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D FRACYDRAFT_223245 UBC1; ubiquitin conjugating protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D FRACYDRAFT_136653 SNF2_N-domain-containing protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D FRACYDRAFT_274601 MMS2; UBC-like protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D FRACYDRAFT_196165 UBC-like protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D FRACYDRAFT_208158 ubiquitin-conjugating enzyme K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D FRACYDRAFT_191550 PCNA1; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D FRACYDRAFT_162340 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D FRACYDRAFT_186987 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D FRACYDRAFT_234617 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
C HRAD17(Rad24)-RFC complex
D FRACYDRAFT_187552 Rad17a; P-loop containing nucleoside triphosphate hydrolase protein K06662 HRAD17; cell cycle checkpoint protein
D FRACYDRAFT_196471 Rfc4a; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_207120 Rfc2; P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D FRACYDRAFT_274639 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D FRACYDRAFT_187556 Rfc3a; replication factor C 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
D FRACYDRAFT_197226 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
C Triple T complex
D FRACYDRAFT_232623 hypothetical protein K11137 TELO2; telomere length regulation protein
D FRACYDRAFT_236258 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
C Other check point factors
D FRACYDRAFT_194899 ATM; kinase-like protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D FRACYDRAFT_170079 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D FRACYDRAFT_160166 kinase-like protein K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D FRACYDRAFT_261371 AAA-domain-containing protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
D FRACYDRAFT_232295 hypothetical protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D FRACYDRAFT_185579 Snm1; DRMBL-domain-containing protein K15340 DCLRE1A; DNA cross-link repair 1A protein
C Helicases
D FRACYDRAFT_205339 SNF2_N-domain-containing protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D FRACYDRAFT_238709 WD40 repeat-like protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D FRACYDRAFT_269656 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D FRACYDRAFT_243553 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D FRACYDRAFT_258986 WD40 repeat-like protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D FRACYDRAFT_181580 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FRACYDRAFT_271337 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FRACYDRAFT_185467 hypothetical protein K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D FRACYDRAFT_271952 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D FRACYDRAFT_260490 ribonucleoside-diphosphate reductase-like protein M1 chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D FRACYDRAFT_262579 Ribonuc_red_lgC-domain-containing protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D FRACYDRAFT_259821 RNR; ribonucleotide reductase K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D FRACYDRAFT_158036 CPD3a; FAD_binding_7-domain-containing protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E FRACYDRAFT_208373 UngB; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FRACYDRAFT_227821 UngA_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E FRACYDRAFT_187316 MutY_a; DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E FRACYDRAFT_149688 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E FRACYDRAFT_161186 EndoIII-related_a; DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_160865 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E FRACYDRAFT_162373 EndoIIIa; DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E FRACYDRAFT_182071 APE1a; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E FRACYDRAFT_225788 DNA/RNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E FRACYDRAFT_225788 DNA/RNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F FRACYDRAFT_265863 DNA gyrase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F FRACYDRAFT_183832 Wrna; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D FRACYDRAFT_181580 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FRACYDRAFT_271337 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D FRACYDRAFT_271952 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024