+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Fulmarus glacialis (Northern fulmar)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        104083446 RNMT; mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        104069246 RNGTT; mRNA-capping enzyme	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        104070102 CDK7; cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        104079102 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
E        104069075 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2	K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] 
E        104080582 FAM103A1; RNMT-activating mini protein	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        104078021 NCBP1; nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        104071946 NCBP2; nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        104082157 NUDT21; cleavage and polyadenylation specificity factor subunit 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        104072084 CPSF6; cleavage and polyadenylation specificity factor subunit 6	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        104072649 PCF11; pre-mRNA cleavage complex 2 protein Pcf11	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        104082785 CPSF2; cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        104069088 CPSF3; cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        104075622 CPSF4; cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        104081053 pre-mRNA 3'-end-processing factor FIP1-like	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        104080254 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1	K15542 PFS2; polyadenylation factor subunit 2 
E        104070697 WDR82; WD repeat-containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        104083411 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104071568 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-gamma catalytic subunit {ECO:0000250|UniProtKB:P36873}-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        104075654 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        104078933 CSTF1; cleavage stimulation factor subunit 1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        104078223 cleavage stimulation factor subunit 2-like	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        104069124 cleavage stimulation factor subunit 3	K14408 CSTF3; cleavage stimulation factor subunit 3 
D      U7-dependent histone pre-mRNA processing factors
E        104071621 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B'-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        104082737 SNRPD3; small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        104071462 SNRPE; small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        104072709 SNRPG; small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        104077956 LSM11; U7 snRNA-associated Sm-like protein LSm11	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        104082785 CPSF2; cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        104069088 CPSF3; cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        104078223 cleavage stimulation factor subunit 2-like	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        104077661 SLBP; LOW QUALITY PROTEIN: histone RNA hairpin-binding protein	K18710 SLBP; histone RNA hairpin-binding protein 
E        104072228 histone RNA hairpin-binding protein-like	K18710 SLBP; histone RNA hairpin-binding protein 
E        104079588 CASP8AP2; CASP8-associated protein 2	K25593 CASP8AP2; CASP8-associated protein 2 
D      DRB sensitivity inducing factor (DSIF) complex
E        104080541 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
D      N6-methyltransferase complex
E        104070376 METTL14; N6-adenosine-methyltransferase subunit METTL14	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        104078829 METTL4; methyltransferase-like protein 4	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        104071610 methyltransferase-like protein 16 isoform X1	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        104071269 WTAP; pre-mRNA-splicing regulator WTAP	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        104076327 KIAA1429; protein virilizer homolog	K22910 VIRMA; protein virilizer 
E        104084239 RBM15B; putative RNA-binding protein 15B	K13190 RBM15; RNA-binding protein 15 
E        104076201 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13-like	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        104081935 CBLL1; E3 ubiquitin-protein ligase Hakai	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        104076344 poly(A) polymerase alpha	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        104069355 PAPOLG; poly(A) polymerase gamma	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        104074578 PAPD4; poly(A) RNA polymerase GLD2	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        104078413 LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1-like	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        104070203 RBM26; RNA-binding protein 26	K13192 RBM26; RNA-binding protein 26 
E        104070609 FTO; alpha-ketoglutarate-dependent dioxygenase FTO	K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        104083995 TARDBP; TAR DNA-binding protein 43	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      104069734 DHX40; probable ATP-dependent RNA helicase DHX40	K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6] 
D      104070209 KIN; DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      104069839 METTL8; methyltransferase-like protein 8	K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-] 
D      104069445 METTL22; methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      104071379 FAM46A; protein FAM46A	K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] 
D      104072406 FAM46C; protein FAM46C	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      104080186 protein FAM46C-like	K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19] 
D      104069413 zinc finger CCCH domain-containing protein 14	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        104075069 RBM8A; RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        104071549 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        104070890 EIF4A3; eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        104078612 CCDC174; coiled-coil domain-containing protein 174	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        104080568 CASC3; protein CASC3	K14323 CASC3; protein CASC3 
E        104082172 SAP18; histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        104076199 PNN; pinin	K13114 PNN; pinin 
E        104071316 RNPS1; RNA-binding protein with serine-rich domain 1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        104077156 SRRM1; serine/arginine repetitive matrix protein 1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        104069555 THOC1; THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        104078704 THOC2; THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        104082604 THOC3; THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        104084390 THOC5; THO complex subunit 5 homolog	K13174 THOC5; THO complex subunit 5 
E        104070915 THOC7; THO complex subunit 7 homolog isoform X1	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        104083143 PCID2; PCI domain-containing protein 2	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        104070578 SHFM1; 26S proteasome complex subunit DSS1	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        104071704 ENY2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        104071335 centrin-2	K10840 CETN2; centrin-2 
E        104084411 CETN3; centrin-3	K16466 CETN3; centrin-3 
E        104069137 MCM3AP; germinal-center associated nuclear protein	K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48] 
D      Nuclear pore complex
E        104073743 TPR; nucleoprotein TPR	K09291 TPR; nucleoprotein TPR 
E        104082734 RAE1; mRNA export factor	K14298 RAE1; mRNA export factor 
E        104071135 SEC13; protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        104077343 NUP37; nucleoporin Nup37	K14302 NUP37; nuclear pore complex protein Nup37 
E        104078353 NUP85; nuclear pore complex protein Nup85	K14304 NUP85; nuclear pore complex protein Nup85 
E        104082571 NUP43; nucleoporin Nup43	K14305 NUP43; nuclear pore complex protein Nup43 
E        104070902 NUP50; nuclear pore complex protein Nup50	K14295 NUP50; nuclear pore complex protein Nup50 
E        104070804 NUP54; LOW QUALITY PROTEIN: nucleoporin p54	K14308 NUP54; nuclear pore complex protein Nup54 
E        104069878 NUP88; nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        104075031 LOW QUALITY PROTEIN: nuclear pore complex protein Nup93-like	K14309 NUP93; nuclear pore complex protein Nup93 
E        104072801 NUP98; nuclear pore complex protein Nup98-Nup96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        104078971 NUP107; nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        104077839 NUP133; nuclear pore complex protein Nup133	K14300 NUP133; nuclear pore complex protein Nup133 
E        104081967 NUP188; nucleoporin NUP188 homolog	K14311 NUP188; nuclear pore complex protein Nup188 
E        104080236 LOW QUALITY PROTEIN: nuclear pore complex protein Nup153-like	K14296 NUP153; nuclear pore complex protein Nup153 
E        104075731 NUP155; LOW QUALITY PROTEIN: nuclear pore complex protein Nup155	K14312 NUP155; nuclear pore complex protein Nup155 
E        104075179 NUP160; nuclear pore complex protein Nup160	K14303 NUP160; nuclear pore complex protein Nup160 
E        104070502 NUP35; nucleoporin NUP53	K14313 NUP35; nuclear pore complex protein Nup53 
E        104072563 NUP205; nuclear pore complex protein Nup205	K14310 NUP205; nuclear pore complex protein Nup205 
E        104080752 NUP210; nuclear pore membrane glycoprotein 210	K14314 NUP210; nuclear pore complex protein Nup210 
E        104083216 NUP214; nuclear pore complex protein Nup214	K14317 NUP214; nuclear pore complex protein Nup214 
E        104073669 NUPL1; LOW QUALITY PROTEIN: nucleoporin p58/p45	K14307 NUPL1; nucleoporin p58/p45 
E        104069201 NUPL2; nucleoporin-like protein 2	K14321 NUPL2; nucleoporin-like protein 2 
E        104077038 NDC1; nucleoporin NDC1	K14315 NDC1; nucleoporin NDC1 
E        104081408 SEH1L; nucleoporin SEH1	K14299 SEH1; nucleoporin SEH1 
E        104079310 RANBP2; E3 SUMO-protein ligase RanBP2	K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] 
E        104075816 SENP2; sentrin-specific protease 2	K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] 
E        104077197 AAAS; aladin	K14320 AAAS; aladin 
E        104084411 CETN3; centrin-3	K16466 CETN3; centrin-3 
E        104084025 NTF2-related export protein 2	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        104071647 RAN; GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        104081821 acidic leucine-rich nuclear phosphoprotein 32 family member A-like	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        104080866 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1	K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B 
E        104076688 ELAVL1; ELAV-like protein 1	K13088 ELAVL1; ELAV-like protein 1 
E        104079767 ELAVL2; ELAV-like protein 2 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        104075114 ELAVL4; ELAV-like protein 4 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        104083453 FAF2; FAS-associated factor 2	K18726 FAF2; FAS-associated factor 2 
E        104077170 VCP; transitional endoplasmic reticulum ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        104069275 VCPKMT; protein-lysine methyltransferase METTL21D	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        104069183 XPO1; exportin-1	K14290 XPO1; exportin-1 
E        104078376 LOW QUALITY PROTEIN: exportin-7-like	K18460 XPO7; exportin-7 
E        104078374 RANBP17; ran-binding protein 17	K24115 RANBP17; Ran-binding protein 17 
E        104081236 RANGAP1; LOW QUALITY PROTEIN: ran GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        104070292 TAF15; TATA-binding protein-associated factor 2N	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      eIF4F and regulatory proteins
E        104073156 EIF4E; eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        104080763 EIF4E2; eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        104080325 EIF4A2; eukaryotic initiation factor 4A-II	K03257 EIF4A; translation initiation factor 4A 
E        104073499 EIF4G3; eukaryotic translation initiation factor 4 gamma 3	K03260 EIF4G; translation initiation factor 4G 
E        104083503 EIF4G2; eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        104083594 EIF4G1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1	K03260 EIF4G; translation initiation factor 4G 
E        104082835 EIF4H; eukaryotic translation initiation factor 4H	K24086 EIF4H; translation initiation factor 4H 
E        104083612 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1	K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 
E        104069400 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        104082592 ANGEL1; protein angel homolog 1	K18729 ANGEL; protein angel 
E        104070404 ANGEL2; protein angel homolog 2 isoform X1	K18729 ANGEL; protein angel 
E        104079638 fragile X mental retardation syndrome-related protein 1	K15516 FMR; fragile X mental retardation protein 
E        104080252 FMR1; fragile X mental retardation protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        104075408 cytoplasmic FMR1-interacting protein 2 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        104080878 cytoplasmic FMR1-interacting protein 1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        104069640 GEMIN5; gem-associated protein 5	K13133 GEMIN5; gem associated protein 5 
E        104070086 transforming acidic coiled-coil-containing protein 3-like	K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
E        104072826 CPEB2; cytoplasmic polyadenylation element-binding protein 2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073292 CPEB4; cytoplasmic polyadenylation element-binding protein 4	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073516 CPEB3; cytoplasmic polyadenylation element-binding protein 3	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104075826 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104075465 ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        104073621 GIGYF2; PERQ amino acid-rich with GYF domain-containing protein 2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        104077972 PABPC4; polyadenylate-binding protein 4	K13126 PABPC; polyadenylate-binding protein 
E        104084345 LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein-like	K13126 PABPC; polyadenylate-binding protein 
E        104070021 PABPC1; polyadenylate-binding protein 1	K13126 PABPC; polyadenylate-binding protein 
E        104071841 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X1	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        104079254 PAIP2; polyadenylate-binding protein-interacting protein 2	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        104080455 PAIP2B; polyadenylate-binding protein-interacting protein 2B	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        104069188 DEAF1; deformed epidermal autoregulatory factor 1 homolog	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        104070877 MCTS1; malignant T-cell-amplified sequence 1	K07575 MCTS; malignant T-cell-amplified sequence 
E        104071083 DENR; density-regulated protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
E        104081376 C->U-editing enzyme APOBEC-1-like	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        104073784 A1CF; APOBEC1 complementation factor isoform X1	K24978 A1CF; APOBEC1 complementation factor 
D      Other transport factors
E        104076117 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        104082509 LOW QUALITY PROTEIN: RNA-binding protein Musashi homolog 1-like	K14411 MSI; RNA-binding protein Musashi 
E        104077769 DAZAP1; DAZ-associated protein 1	K14411 MSI; RNA-binding protein Musashi 
E        104081634 uncharacterized protein LOC104081634	K14416 HBS1; elongation factor 1 alpha-like protein 
E        104081636 HBS1L; HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        104077822 PELO; LOW QUALITY PROTEIN: protein pelota homolog	K06965 PELO; protein pelota 
E        104084221 PABPN1L; embryonic polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        104078709 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX19B-like	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        104069590 ATP-dependent RNA helicase DDX25-like	K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7] 
E        104072637 SARNP; SAP domain-containing ribonucleoprotein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        104074652 RCC1; regulator of chromosome condensation	K11493 RCC1; regulator of chromosome condensation 
E        104072344 LARP6; la-related protein 6	K18733 LARP6; la-related protein 6 
E        104076651 POLDIP3; LOW QUALITY PROTEIN: polymerase delta-interacting protein 3	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        104082441 zinc finger CCCH domain-containing protein 11A-like	K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 
E        104080126 PATL2; protein PAT1 homolog 2	K24823 PATL2; protein PAT1 homolog 2 
C    Surveillance factors
D      Surveillance complex
E        104073029 ETF1; eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        104072903 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A	K03267 ERF3; peptide chain release factor subunit 3 
E        104083066 UPF1; regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        104072086 UPF2; regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        104078065 UPF3B; regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        104076874 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        104075028 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        104076762 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        104071329 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        104084094 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        104078348 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        104078757 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        104069272 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        104070326 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        104079072 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        104079977 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        104069446 SMG1; serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        104080374 SMG5; LOW QUALITY PROTEIN: protein SMG5	K11125 SMG5; protein SMG5 
E        104077502 SMG7; protein SMG7 isoform X1	K14409 SMG7; protein SMG7 
E        104075358 SMG8; LOW QUALITY PROTEIN: protein SMG8	K18734 SMG8; protein SMG8 
E        104073621 GIGYF2; PERQ amino acid-rich with GYF domain-containing protein 2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        104075579 SECISBP2; selenocysteine insertion sequence-binding protein 2	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        104077220 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        104077650 GTPBP1; GTP-binding protein 1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        104076575 pumilio domain-containing protein KIAA0020 homolog	K14844 PUF6; pumilio homology domain family member 6 
E        104076336 MYO5A; LOW QUALITY PROTEIN: unconventional myosin-Va	K10357 MYO5; myosin V 
E        104072973 LOW QUALITY PROTEIN: unconventional myosin-Vc-like	K10357 MYO5; myosin V 
E        104083181 LOW QUALITY PROTEIN: unconventional myosin-Vb-like	K10357 MYO5; myosin V 
E        104070848 BICD2; protein bicaudal D homolog 2	K18739 BICD; protein bicaudal D 
E        104080091 BICD1; protein bicaudal D homolog 1	K18739 BICD; protein bicaudal D 
E        104081393 EXD1; exonuclease 3'-5' domain-containing protein 1	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        104081166 actin, cytoplasmic 1 isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        104072104 actin, cytoplasmic type 5 isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        104075348 ACTB; actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        104077410 MBP; myelin basic protein isoform X1	K17269 MBP; myelin basic protein 
E        104080482 VIM; vimentin	K07606 VIM; vimentin 
E        104075259 derriere protein-like	K05495 GDF1; growth differentiation factor 1 
E        104079135 T-box-containing protein TBX6L	K10180 TBX6; T-box protein 6 
D      Trans-acting binding proteins
E        104083505 FUBP3; far upstream element-binding protein 3	K13210 FUBP; far upstream element-binding protein 
E        104079661 FUBP1; far upstream element-binding protein 1	K13210 FUBP; far upstream element-binding protein 
E        104071138 elongation factor 1-alpha 2	K03231 EEF1A; elongation factor 1-alpha 
E        104078591 EEF1A1; elongation factor 1-alpha 1	K03231 EEF1A; elongation factor 1-alpha 
E        104075596 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1	K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1 
E        104084382 AGFG1; arf-GAP domain and FG repeat-containing protein 1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
E        104081043 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        104079144 STAU2; double-stranded RNA-binding protein Staufen homolog 2	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        104083625 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3	K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 
E        104073625 PTBP1; polypyrimidine tract-binding protein 1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        104072826 CPEB2; cytoplasmic polyadenylation element-binding protein 2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073292 CPEB4; cytoplasmic polyadenylation element-binding protein 4	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073516 CPEB3; cytoplasmic polyadenylation element-binding protein 3	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104075826 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        104079638 fragile X mental retardation syndrome-related protein 1	K15516 FMR; fragile X mental retardation protein 
E        104080252 FMR1; fragile X mental retardation protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        104075408 cytoplasmic FMR1-interacting protein 2 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        104080878 cytoplasmic FMR1-interacting protein 1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        104078192 poly(rC)-binding protein 3-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        104074668 PCBP3; poly(rC)-binding protein 3	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        104073777 CAPRIN1; caprin-1	K18743 CAPRIN1; caprin-1 
E        104069855 CAPRIN2; caprin-2 isoform X1	K18744 CAPRIN2; caprin-2 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        104081588 5'-3' exoribonuclease 1-like	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        104081222 AGO1; protein argonaute-1 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        104072663 AGO3; protein argonaute-3 {ECO:0000255|HAMAP-Rule:MF_03032} isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        104078852 AGO2; LOW QUALITY PROTEIN: protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        104084272 AGO4; protein argonaute-4	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        104073156 EIF4E; eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        104080763 EIF4E2; eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        104083066 UPF1; regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        104075465 ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        104079211 DDX6; probable ATP-dependent RNA helicase DDX6	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        104075653 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        104070302 LSM14B; protein LSM14 homolog B	K18749 LSM14; protein LSM14 
E        104073612 LSM14A; protein LSM14 homolog A	K18749 LSM14; protein LSM14 
E        104081376 C->U-editing enzyme APOBEC-1-like	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        104075758 PNRC2; proline-rich nuclear receptor coactivator 2	K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
E        104070211 TNPO1; transportin-1	K18752 TNPO1; transportin-1 
E        104069446 SMG1; serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        104080374 SMG5; LOW QUALITY PROTEIN: protein SMG5	K11125 SMG5; protein SMG5 
E        104077502 SMG7; protein SMG7 isoform X1	K14409 SMG7; protein SMG7 
E        104069426 HTT; huntingtin	K04533 HD; huntingtin 
E        104074917 IPO8; importin-8	K18755 IPO8; importin-8 
E        104075435 BICC1; protein bicaudal C homolog 1	K18756 BICC1; protein bicaudal C 
E        104076117 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        104071103 cAMP-dependent protein kinase catalytic subunit beta	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        104078285 LARP1; LOW QUALITY PROTEIN: la-related protein 1	K18757 LARP1; la-related protein 1 
E        104084287 LARP1B; la-related protein 1B	K18757 LARP1; la-related protein 1 
E        104084045 ataxin-2-like	K23625 ATXN2_2L; ataxin 2/2L 
D      P-body specific factors
E        104080453 DCP2; m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        104073441 LOW QUALITY PROTEIN: mRNA-decapping enzyme 1A-like	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        104079132 DCP1B; LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        104078305 LSM1; U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        104083867 LSM3; U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        104080715 LSM4; U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        104069875 LSM5; U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        104072121 SNRPF; small nuclear ribonucleoprotein F	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        104080985 LSM7; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        104072315 LSM8; LSM8 homolog, U6 small nuclear RNA associated	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        104079216 kinesin light chain 1-like	K10407 KLC; kinesin light chain 
E        104080787 KLC1; kinesin light chain 1 isoform X1	K10407 KLC; kinesin light chain 
E        104076336 MYO5A; LOW QUALITY PROTEIN: unconventional myosin-Va	K10357 MYO5; myosin V 
E        104072973 LOW QUALITY PROTEIN: unconventional myosin-Vc-like	K10357 MYO5; myosin V 
E        104083181 LOW QUALITY PROTEIN: unconventional myosin-Vb-like	K10357 MYO5; myosin V 
E        104081763 tubulin alpha-4 chain-like	K07374 TUBA; tubulin alpha 
E        104081764 tubulin alpha-4 chain isoform X1	K07374 TUBA; tubulin alpha 
E        104072922 tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        104073269 tubulin alpha-3 chain isoform X1	K07374 TUBA; tubulin alpha 
E        104079449 tubulin alpha-5 chain	K07374 TUBA; tubulin alpha 
E        104080058 tubulin alpha-8 chain	K07374 TUBA; tubulin alpha 
E        104072826 CPEB2; cytoplasmic polyadenylation element-binding protein 2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073292 CPEB4; cytoplasmic polyadenylation element-binding protein 4	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104073516 CPEB3; cytoplasmic polyadenylation element-binding protein 3	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104075826 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        104069640 GEMIN5; gem-associated protein 5	K13133 GEMIN5; gem associated protein 5 
E        104070086 transforming acidic coiled-coil-containing protein 3-like	K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
E        104076561 TNRC6B; trinucleotide repeat-containing gene 6B protein	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        104072963 trinucleotide repeat-containing gene 6A protein-like	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        104080207 TNRC6C; trinucleotide repeat-containing gene 6C protein	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        104075506 CNOT1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        104070600 CNOT2; CCR4-NOT transcription complex subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        104080918 CNOT4; CCR4-NOT transcription complex subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        104077700 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        104082908 CNOT6; CCR4-NOT transcription complex subunit 6	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        104071586 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        104074098 CNOT7; CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        104082824 LOW QUALITY PROTEIN: uncharacterized protein KIAA0355 homolog	K26671 GARRE1; granule associated Rac and RHOG effector protein 1 
E        104078409 LOW QUALITY PROTEIN: DIS3-like exonuclease 2 {ECO:0000255|HAMAP-Rule:MF_03045}	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        104080508 PAN2; LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        104074792 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        104076319 BTG2; protein BTG2	K14443 TOB; protein Tob/BTG 
E        104082247 TOB1; protein Tob1	K14443 TOB; protein Tob/BTG 
E        104082662 BTG4; protein BTG4	K14443 TOB; protein Tob/BTG 
E        104078911 TOB2; LOW QUALITY PROTEIN: protein Tob2	K14443 TOB; protein Tob/BTG 
E        104069371 BTG1; protein BTG1	K14443 TOB; protein Tob/BTG 
E        104070739 protein BTG1-like	K14443 TOB; protein Tob/BTG 
E        104069400 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        104081211 EDC3; enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        104079722 enhancer of mRNA-decapping protein 4-like	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        104072086 UPF2; regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        104078065 UPF3B; regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
E        104073788 TRIM71; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        104070250 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase	K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] 
E        104071001 ZAR1-like protein	K18762 ZAR1; zygote arrest protein 1 
E        104078556 YTHDF2; YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
E        104071945 YTHDF1; YTH domain-containing family protein 1 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        104075548 YTHDF3; YTH domain-containing family protein 3	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        104070725 nucleolysin TIAR	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        104083202 TIA1; nucleolysin TIA-1 isoform p40	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        104077972 PABPC4; polyadenylate-binding protein 4	K13126 PABPC; polyadenylate-binding protein 
E        104084345 LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein-like	K13126 PABPC; polyadenylate-binding protein 
E        104070021 PABPC1; polyadenylate-binding protein 1	K13126 PABPC; polyadenylate-binding protein 
E        104081043 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        104079144 STAU2; double-stranded RNA-binding protein Staufen homolog 2	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        104079638 fragile X mental retardation syndrome-related protein 1	K15516 FMR; fragile X mental retardation protein 
E        104080252 FMR1; fragile X mental retardation protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        104076688 ELAVL1; ELAV-like protein 1	K13088 ELAVL1; ELAV-like protein 1 
E        104074199 G3BP1; LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 1	K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3] 
E        104070415 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        104070122 EIF2A; eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        104078603 EIF3B; eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        104080325 EIF4A2; eukaryotic initiation factor 4A-II	K03257 EIF4A; translation initiation factor 4A 
E        104070890 EIF4A3; eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        104073499 EIF4G3; eukaryotic translation initiation factor 4 gamma 3	K03260 EIF4G; translation initiation factor 4G 
E        104083503 EIF4G2; eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        104083594 EIF4G1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1	K03260 EIF4G; translation initiation factor 4G 
E        104077035 RPS6KA1; ribosomal protein S6 kinase alpha-1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        104077269 ribosomal protein S6 kinase alpha-6	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        104072712 RPS6KA3; ribosomal protein S6 kinase alpha-3	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        104083381 ribosomal protein S6 kinase alpha-2	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        104076890 GNB2L1; guanine nucleotide-binding protein subunit beta-2-like 1	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        104083588 TRAF2; TNF receptor-associated factor 2	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        104073394 tudor domain-containing protein 3-like	K18404 TDRD3; tudor domain-containing protein 3 
E        104073198 LARP4B; la-related protein 4B	K18763 LARP4; la-related protein 4 
E        104076098 LARP4; la-related protein 4	K18763 LARP4; la-related protein 4 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        104073441 LOW QUALITY PROTEIN: mRNA-decapping enzyme 1A-like	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        104079132 DCP1B; LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        104080453 DCP2; m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        104079211 DDX6; probable ATP-dependent RNA helicase DDX6	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        104081211 EDC3; enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        104079722 enhancer of mRNA-decapping protein 4-like	K12616 EDC4; enhancer of mRNA-decapping protein 4 
D      Lsm complex
E        104078305 LSM1; U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        104083867 LSM3; U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        104080715 LSM4; U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        104069875 LSM5; U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        104072121 SNRPF; small nuclear ribonucleoprotein F	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        104080985 LSM7; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        104072315 LSM8; LSM8 homolog, U6 small nuclear RNA associated	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        104081588 5'-3' exoribonuclease 1-like	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        104070595 XRN2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        104081191 DCPS; m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        104073532 HELZ; LOW QUALITY PROTEIN: probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
C    3'-5' decay
D      Core exosome factors
E        104077892 EXOSC1; exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        104080900 EXOSC2; exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        104082551 EXOSC3; exosome complex component RRP40	K03681 RRP40; exosome complex component RRP40 
E        104072817 EXOSC7; exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
E        104070606 EXOSC8; exosome complex component RRP43	K12586 RRP43; exosome complex component RRP43 
E        104070700 EXOSC9; exosome complex component RRP45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        104076997 DIS3; exosome complex exonuclease RRP44	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        104078509 DIS3L; DIS3-like exonuclease 1	K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] 
E        104077626 EXOSC10; exosome component 10	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        104078168 C1D; nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        104071296 MPHOSPH6; M-phase phosphoprotein 6	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        104073915 PAPD5; non-canonical poly(A) RNA polymerase PAPD5	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        104074718 PAPD7; non-canonical poly(A) RNA polymerase PAPD7	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        104079409 zinc finger CCHC domain-containing protein 7-like	K12597 AIR1_2; protein AIR1/2 
E        104069119 SKIV2L2; superkiller viralicidic activity 2-like 2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        104073115 TTC37; tetratricopeptide repeat protein 37	K12600 SKI3; superkiller protein 3 
E        104070927 WDR61; WD repeat-containing protein 61	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        104077700 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        104082908 CNOT6; CCR4-NOT transcription complex subunit 6	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        104075506 CNOT1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        104070600 CNOT2; CCR4-NOT transcription complex subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        104080918 CNOT4; CCR4-NOT transcription complex subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        104071586 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        104074098 CNOT7; CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        104082760 RQCD1; cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        104069196 CNOT10; CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        104080508 PAN2; LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        104074792 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        104076527 PARN; poly(A)-specific ribonuclease PARN	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        104077774 PNLDC1; poly(A)-specific ribonuclease PARN-like domain-containing protein 1	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        104073768 DHX36; ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        104076319 BTG2; protein BTG2	K14443 TOB; protein Tob/BTG 
E        104082247 TOB1; protein Tob1	K14443 TOB; protein Tob/BTG 
E        104082662 BTG4; protein BTG4	K14443 TOB; protein Tob/BTG 
E        104078911 TOB2; LOW QUALITY PROTEIN: protein Tob2	K14443 TOB; protein Tob/BTG 
E        104069371 BTG1; protein BTG1	K14443 TOB; protein Tob/BTG 
E        104070739 protein BTG1-like	K14443 TOB; protein Tob/BTG 
E        104071983 CCRN4L; nocturnin	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        104083490 ERI1; 3'-5' exoribonuclease 1	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        104071672 ERI2; ERI1 exoribonuclease 2	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        104081191 DCPS; m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        104069998 PDE12; 2',5'-phosphodiesterase 12	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        104077689 IREB2; iron-responsive element-binding protein 2	K22416 IREB2; iron-responsive element-binding protein 2 
E        104073532 HELZ; LOW QUALITY PROTEIN: probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
E        104069111 HELZ2; helicase with zinc finger domain 2	K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] 
E        104069223 NRDE2; protein NRDE2 homolog	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        104083544 protein Smaug homolog 1-like	K27396 SMG; protein Smaug 
E        104073813 FOCAD; focadhesin	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
E        104077449 ZC3H12C; probable ribonuclease ZC3H12C	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        104082225 ZC3H12B; probable ribonuclease ZC3H12B	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        104083595 ZC3H12D; probable ribonuclease ZC3H12D	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        104084200 ZC3H12A; ribonuclease ZC3H12A	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        104083743 DROSHA; ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        104073749 REXO2; oligoribonuclease, mitochondrial	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        104075519 alpha-enolase isoform X1	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        104070614 gamma-enolase isoform X1	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        104082492 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        104080018 PFKP; LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, platelet type	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        104078583 HSPA9; stress-70 protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        104070256 HSPD1; 60 kDa heat shock protein, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        104080900 EXOSC2; exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        104077892 EXOSC1; exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        104072817 EXOSC7; exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024