+E Transcription factors KO #

  Transcription Factors - Flavobacterium humidisoli

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D M0M44_03465 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D M0M44_08960 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D M0M44_15920 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D M0M44_08400 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D M0M44_20495 helix-turn-helix domain-containing protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D M0M44_08130 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D M0M44_04620 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D M0M44_22175 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D M0M44_16095 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator C DeoR family D M0M44_03625 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D M0M44_19755 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_20000 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_07260 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_08340 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_10370 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_10700 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M0M44_13370 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D M0M44_22480 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D M0M44_22620 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D M0M44_12605 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D M0M44_20660 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D M0M44_23070 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D M0M44_17625 winged helix-turn-helix transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D M0M44_21640 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D M0M44_03120 Lrp/AsnC ligand binding domain-containing protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D M0M44_16655 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D M0M44_00085 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D M0M44_12170 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D M0M44_22100 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D M0M44_00310 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D M0M44_04855 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D M0M44_12625 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D M0M44_22820 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D M0M44_09000 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D M0M44_23320 autorepressor SdpR family transcription factor K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons C XRE family D M0M44_08985 helix-turn-helix domain-containing protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family D M0M44_00955 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D M0M44_04865 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D M0M44_17910 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D M0M44_17920 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D M0M44_07045 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D M0M44_14555 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D M0M44_16265 sigma-54 dependent transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D M0M44_03165 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D M0M44_21765 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator D M0M44_10325 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D M0M44_01000 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D M0M44_12470 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D M0M44_12915 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D M0M44_21070 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M0M44_00270 phosphoribosyltransferase domain-containing protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M0M44_01090 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D M0M44_00725 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D M0M44_03775 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D M0M44_09275 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0