+F Repair protein KO
#
DNA Repair and Recombination Proteins - Fusarium keratoplasticum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NCS57_00692100 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NCS57_00156200 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NCS57_00134700 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E NCS57_00139100 UDG domain-containing protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E NCS57_00759200 Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E NCS57_00586600 DNA-(apurinic or apyrimidinic site) lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E NCS57_00318700 ENDO3c domain-containing protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E NCS57_00739200 Endonuclease III-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E NCS57_00048300 AP-endonuc-2 domain-containing protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E NCS57_00440500 Endo/exonuclease/phosphatase domain-containing protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F NCS57_01127800 DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F NCS57_01126700 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F NCS57_00839300 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F NCS57_00576900 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F NCS57_00580300 DNA polymerase epsilon catalytic subunit K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F NCS57_00727300 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E NCS57_00078100 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E NCS57_00702000 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E NCS57_01039600 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E NCS57_00240400 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E NCS57_01124200 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E NCS57_00181300 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E NCS57_01171200 Poly [ADP-ribose] polymerase K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F NCS57_00229300 AN1-type domain-containing protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F NCS57_00381100 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F NCS57_00614700 UV excision repair protein RAD23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F NCS57_00890400 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F NCS57_00231200 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F NCS57_01168100 hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F NCS57_00134100 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F NCS57_00895800 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F NCS57_00036700 RPOLD domain-containing protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F NCS57_00071100 RPOL4c domain-containing protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F NCS57_00255500 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F NCS57_00634500 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F NCS57_00061800 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F NCS57_00837200 DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F NCS57_00654000 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F NCS57_00136700 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F NCS57_01136000 RNA-pol-L-2 domain-containing protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F NCS57_00822100 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F NCS57_00890400 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F NCS57_00231200 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F NCS57_00738200 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F NCS57_00885700 Transcription-coupled repair protein CSB/RAD26 K10841 ERCC6; DNA excision repair protein ERCC-6
F NCS57_01110700 Transcription elongation factor 1-like protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E NCS57_00166600 DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E NCS57_00622600 DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E NCS57_01049300 General transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E NCS57_01050800 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E NCS57_00574000 General transcription and DNA repair factor IIH K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E NCS57_00694900 General transcription and DNA repair factor IIH subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E NCS57_00370000 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E NCS57_00752200 General transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E NCS57_01116000 [RNA-polymerase]-subunit kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E NCS57_01273700 Cyclin-C-2 domain-containing protein K06634 CCNH; cyclin H
E NCS57_01220400 RNA polymerase II transcription factor B subunit 3 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E NCS57_00748200 Replication protein A subunit K07466 RFA1; replication factor A1
E NCS57_00251800 hypothetical protein K10739 RFA2; replication factor A2
E NCS57_00995500 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E NCS57_00018500 XPA-C domain-containing protein K10847 XPA; DNA-repair protein complementing XP-A cells
E NCS57_00300300 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E NCS57_00423100 ERCC4 domain-containing protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E NCS57_00135500 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E NCS57_01039600 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E NCS57_01024100 MMS19 nucleotide excision repair protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E NCS57_00113800 CULLIN-2 domain-containing protein K03869 CUL3; cullin 3
E NCS57_00120300 Elongin-C K03872 ELOC; elongin-C
E NCS57_00071800 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E NCS57_00557400 DNA mismatch repair protein msh-2 K08735 MSH2; DNA mismatch repair protein MSH2
E NCS57_00593500 DNA mismatch repair protein K08736 MSH3; DNA mismatch repair protein MSH3
E NCS57_01103000 DNA mismatch repair protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E NCS57_00252200 DNA-mis-repair domain-containing protein K08734 MLH1; DNA mismatch repair protein MLH1
E NCS57_01243400 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E NCS57_00018800 MutL-C domain-containing protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E NCS57_01127800 DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E NCS57_01126700 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E NCS57_00839300 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E NCS57_00576900 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E NCS57_00748200 Replication protein A subunit K07466 RFA1; replication factor A1
E NCS57_00251800 hypothetical protein K10739 RFA2; replication factor A2
E NCS57_00995500 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E NCS57_00117800 Replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E NCS57_00062900 Replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E NCS57_01131000 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E NCS57_00117600 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E NCS57_00576400 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E NCS57_00078100 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E NCS57_00585900 Exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E NCS57_01039600 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E NCS57_00524200 DNA damage-binding protein CMR1 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E NCS57_00012300 Double-strand break repair protein K10865 MRE11; double-strand break repair protein MRE11
E NCS57_00147800 AAA-23 domain-containing protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E NCS57_00012300 Double-strand break repair protein K10865 MRE11; double-strand break repair protein MRE11
E NCS57_00147800 AAA-23 domain-containing protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
D RecA family proteins
E NCS57_00124100 RECA-2 domain-containing protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E NCS57_00744500 hypothetical protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E NCS57_00546700 DNA repair protein rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E NCS57_00094200 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E NCS57_00094200 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E NCS57_00631200 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E NCS57_00559200 DUF1767 domain-containing protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E NCS57_00748200 Replication protein A subunit K07466 RFA1; replication factor A1
E NCS57_00251800 hypothetical protein K10739 RFA2; replication factor A2
E NCS57_00995500 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E NCS57_00236500 SMK-1 domain-containing protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E NCS57_00412700 Structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E NCS57_00550400 SMC-N domain-containing protein K22804 SMC6; structural maintenance of chromosomes protein 6
E NCS57_00268000 Non-structural maintenance of chromosomes element 1-like protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E NCS57_00388300 SP-RING-type domain-containing protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E NCS57_00404200 Non-structural maintenance of chromosomes element 4 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E NCS57_00011200 ERCC4 domain-containing protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E NCS57_00070300 Crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E NCS57_00816600 putative 26S proteasome complex subunit sem-1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E NCS57_01172300 Structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E NCS57_01060500 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E NCS57_00577800 Chromatin modification-related protein EAF3 K11339 MORF4L1; mortality factor 4-like protein 1
E NCS57_00549000 AAA domain-containing protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E NCS57_00131000 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E NCS57_00094600 ATP-dependent DNA helicase K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E NCS57_01235800 ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E NCS57_00630600 ATP-dependent DNA helicase II subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E NCS57_00012300 Double-strand break repair protein K10865 MRE11; double-strand break repair protein MRE11
E NCS57_00147800 AAA-23 domain-containing protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E NCS57_00878400 DNA ligase K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E NCS57_01141700 DNA-LIGASE-A3 domain-containing protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E NCS57_00086900 DNA polymerase lambda K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E NCS57_01246200 DNA polymerase K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E NCS57_01124200 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E NCS57_00973500 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E NCS57_01297000 Endo/exonuclease/phosphatase domain-containing protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E NCS57_01126300 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E NCS57_00094200 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E NCS57_00631200 DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E NCS57_00559200 DUF1767 domain-containing protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E NCS57_00586200 Fanconi-associated nuclease K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E NCS57_00113200 Telomere-reg-2 domain-containing protein K11137 TELO2; telomere length regulation protein
E NCS57_01055300 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E NCS57_00230800 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E NCS57_00619500 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E NCS57_00524200 DNA damage-binding protein CMR1 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D NCS57_00444300 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D NCS57_00561900 UmuC domain-containing protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D NCS57_00041200 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D NCS57_00079900 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D NCS57_00441400 DNA polymerase K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D NCS57_00246400 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D NCS57_00839200 Postreplication repair E3 ubiquitin-protein ligase RAD18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D NCS57_00868400 DNA repair protein RAD5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D NCS57_00265000 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D NCS57_00295900 UBC core domain-containing protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D NCS57_00416700 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D NCS57_00078100 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D NCS57_00545000 SprT-like domain-containing protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D NCS57_00877400 DNA repair protein rad9 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D NCS57_01153600 Checkpoint protein K10903 HUS1; HUS1 checkpoint protein
D NCS57_00161100 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D NCS57_00086500 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D NCS57_00062900 Replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D NCS57_01131000 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D NCS57_00117600 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D NCS57_00576400 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D NCS57_00161100 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D NCS57_01136400 Topoisomerase 1-associated factor 1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D NCS57_00451200 Chromosome segregation in meiosis protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D NCS57_00731800 MRC1 domain-containing protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D NCS57_00113200 Telomere-reg-2 domain-containing protein K11137 TELO2; telomere length regulation protein
D NCS57_01027400 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D NCS57_00566600 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D NCS57_01132100 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D NCS57_00420700 Non-specific serine/threonine protein kinase K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D NCS57_01032700 Serine/threonine-protein kinase Tel1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D NCS57_00032700 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D NCS57_00092700 M-phase inducer phosphatase K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D NCS57_00057700 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D NCS57_00598700 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D NCS57_00755200 Protein kinase domain-containing protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D NCS57_01046700 hypothetical protein K24664 FKH; forkhead protein FKH
D NCS57_00681000 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D NCS57_00563800 Sde2-N-Ubi domain-containing protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D NCS57_00113600 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D NCS57_00224100 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D NCS57_00407000 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D NCS57_00755900 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D NCS57_00865400 Pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D NCS57_00261800 Pre-mRNA-splicing factor cef-1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D NCS57_00728500 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D NCS57_00049500 Pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D NCS57_01213500 Nudix hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCS57_00077900 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NCS57_00571000 Ribonucleoside-diphosphate reductase K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D NCS57_01044300 Ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NCS57_00692100 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NCS57_00156200 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NCS57_00134700 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E NCS57_00751100 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E NCS57_00759200 Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E NCS57_00388600 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E NCS57_00318700 ENDO3c domain-containing protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E NCS57_00739200 Endonuclease III-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E NCS57_00393300 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E NCS57_00393300 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D NCS57_01213500 Nudix hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCS57_00077900 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024