+E Ribosome biogenesis KO
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Ribosome Biogenesis - Ferrigenium kumadai
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D FGKAn22_09850 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D FGKAn22_17760 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C FGKAn22_09860 era; GTPase Era K03595 era; GTPase
C FGKAn22_05590 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C FGKAn22_13000 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C FGKAn22_13060 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C FGKAn22_19100 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C FGKAn22_18740 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D FGKAn22_02660 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D FGKAn22_01070 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D FGKAn22_18270 NOL1/NOP2/Sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D FGKAn22_00120 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D FGKAn22_05100 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D FGKAn22_00830 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D FGKAn22_24240 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D FGKAn22_21760 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D FGKAn22_12990 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D FGKAn22_23940 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D FGKAn22_13730 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D FGKAn22_05310 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D FGKAn22_16360 rlmF; ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D FGKAn22_22260 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D FGKAn22_01470 rRNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D FGKAn22_12490 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D FGKAn22_22140 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D FGKAn22_11810 rlmM; ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D FGKAn22_15320 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D FGKAn22_06290 putative RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D FGKAn22_05910 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D FGKAn22_24050 rluA; pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D FGKAn22_09720 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D FGKAn22_11690 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D FGKAn22_07700 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D FGKAn22_05410 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D FGKAn22_11020 hypothetical protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D FGKAn22_19780 RNA pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C FGKAn22_16210 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C FGKAn22_03110 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C FGKAn22_07950 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C FGKAn22_22850 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C FGKAn22_15030 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C FGKAn22_06630 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C FGKAn22_09850 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C FGKAn22_11680 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C FGKAn22_22240 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C FGKAn22_00930 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C FGKAn22_12900 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C FGKAn22_09860 era; GTPase Era K03595 era; GTPase
C FGKAn22_17800 rsgA_2; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C FGKAn22_02470 rsgA_1; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C FGKAn22_15250 der; GTPase Der K03977 engA; GTPase
C FGKAn22_05590 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C FGKAn22_02720 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C FGKAn22_13800 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C FGKAn22_22440 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C FGKAn22_20760 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C FGKAn22_13040 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C FGKAn22_13070 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C FGKAn22_11060 RNA-binding protein K14761 rlbA; ribosome-associated protein
C FGKAn22_22270 hypothetical protein K09710 ybeB; ribosome-associated protein
C FGKAn22_19800 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C FGKAn22_05300 hypothetical protein K07574 yhbY; RNA-binding protein
C FGKAn22_19190 hypothetical protein K09889 yjgA; ribosome-associated protein
C FGKAn22_04120 rpoN_1; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C FGKAn22_17620 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C FGKAn22_12970 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024