+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Fomitiporia mediterranea

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E FOMMEDRAFT_119362 mRNA-methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E FOMMEDRAFT_170797 Pkinase-domain-containing protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] E FOMMEDRAFT_101004 Pkinase-domain-containing protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E FOMMEDRAFT_104172 mRNA capping enzyme, alpha subunit K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] E FOMMEDRAFT_97783 mRNA capping enzyme K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] D Cap binding complex E FOMMEDRAFT_157996 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1 E FOMMEDRAFT_124824 RNA-binding domain-containing protein K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E FOMMEDRAFT_22195 cleavage and polyadenylation specific factor 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 D Pre-mRNA cleavage factor IIm (CFIIm) E FOMMEDRAFT_166057 Clp1-domain-containing protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] E FOMMEDRAFT_90294 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 D Cleavage and polyadenylation specificity factor (CPSF) complex E FOMMEDRAFT_78263 cleavage factor protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E FOMMEDRAFT_135390 cleavage and polyadenylation specificity factor subunit K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E FOMMEDRAFT_123239 Metallo-hydrolase/oxidoreductase K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E FOMMEDRAFT_133331 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E FOMMEDRAFT_137600 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E FOMMEDRAFT_23454 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E FOMMEDRAFT_74364 DWNN-domain-containing protein K15541 MPE1; protein MPE1 E FOMMEDRAFT_119834 WD40 repeat-like protein K15542 PFS2; polyadenylation factor subunit 2 E FOMMEDRAFT_25963 WD40 repeat-like protein K14962 WDR82; COMPASS component SWD2 E FOMMEDRAFT_133466 phospho protein phosphatase PPZ K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E FOMMEDRAFT_171557 Metallo-dependent phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E FOMMEDRAFT_110406 phospho protein phosphatase K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E FOMMEDRAFT_142096 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2 E FOMMEDRAFT_125114 Suf-domain-containing protein K14408 CSTF3; cleavage stimulation factor subunit 3 E FOMMEDRAFT_16256 hypothetical protein K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E FOMMEDRAFT_115847 Sm-like ribonucleo protein K11086 SNRPB; small nuclear ribonucleoprotein B and B' E FOMMEDRAFT_107963 Sm-like ribonucleo protein K11088 SNRPD3; small nuclear ribonucleoprotein D3 E FOMMEDRAFT_125703 small nuclear ribonucleo protein SmF K11098 SNRPF; small nuclear ribonucleoprotein F E FOMMEDRAFT_141897 like-Sm ribonucleo protein K11099 SNRPG; small nuclear ribonucleoprotein G E FOMMEDRAFT_135390 cleavage and polyadenylation specificity factor subunit K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E FOMMEDRAFT_123239 Metallo-hydrolase/oxidoreductase K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E FOMMEDRAFT_142096 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2 E FOMMEDRAFT_16256 hypothetical protein K06100 SYMPK; symplekin D DRB sensitivity inducing factor (DSIF) complex E FOMMEDRAFT_169068 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E FOMMEDRAFT_86563 transcription elongation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E FOMMEDRAFT_90465 MT-A70-domain-containing protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E FOMMEDRAFT_18690 MT-A70-domain-containing protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E FOMMEDRAFT_153997 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E FOMMEDRAFT_145903 hypothetical protein K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 D Poly(A) addition factors E FOMMEDRAFT_158532 poly polymerase K14376 PAP; poly(A) polymerase [EC:2.7.7.19] D Negative regulators of mRNA 3' end processing E FOMMEDRAFT_106444 hypothetical protein K13192 RBM26; RNA-binding protein 26 C Other processing factors D FOMMEDRAFT_23378 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17 D FOMMEDRAFT_169094 hypothetical protein K27103 SRRT; serrate RNA effector molecule D FOMMEDRAFT_138089 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 B mRNA surveillance and transport factors C Transport factors D EJC complex E FOMMEDRAFT_164573 RNA-binding domain-containing protein K12876 RBM8A; RNA-binding protein 8A E FOMMEDRAFT_91457 mago nashi domain-containing protein K12877 MAGOH; protein mago nashi E FOMMEDRAFT_142893 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162024 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162026 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162739 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_155378 ATP-dependent RNA helicase SUB2 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E FOMMEDRAFT_126606 DEAD-domain-containing protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E FOMMEDRAFT_151670 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174 E FOMMEDRAFT_158843 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18 E FOMMEDRAFT_136573 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1 D TREX complex E FOMMEDRAFT_114065 hypothetical protein K12878 THOC1; THO complex subunit 1 E FOMMEDRAFT_169407 hypothetical protein K12879 THOC2; THO complex subunit 2 E FOMMEDRAFT_147879 WD40 repeat-like protein K12880 THOC3; THO complex subunit 3 E FOMMEDRAFT_142893 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162024 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162026 hypothetical protein K12881 THOC4; THO complex subunit 4 E FOMMEDRAFT_162739 hypothetical protein K12881 THOC4; THO complex subunit 4 D TREX-2 complex E FOMMEDRAFT_17446 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E FOMMEDRAFT_142345 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor E FOMMEDRAFT_114041 EF-hand K16466 CETN3; centrin-3 E FOMMEDRAFT_112104 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3 D Nuclear pore complex E FOMMEDRAFT_31443 hypothetical protein K09291 TPR; nucleoprotein TPR E FOMMEDRAFT_103051 WD40 repeat-like protein K14298 RAE1; mRNA export factor E FOMMEDRAFT_165639 poly RNA export protein K14298 RAE1; mRNA export factor E FOMMEDRAFT_30574 WD40 repeat-like protein K14004 SEC13; protein transport protein SEC13 E FOMMEDRAFT_164524 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85 E FOMMEDRAFT_121798 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54 E FOMMEDRAFT_147787 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62 E FOMMEDRAFT_83331 nucleoporin-interacting protein NIC96 K14309 NUP93; nuclear pore complex protein Nup93 E FOMMEDRAFT_120127 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E FOMMEDRAFT_83835 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E FOMMEDRAFT_148674 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107 E FOMMEDRAFT_124682 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133 E FOMMEDRAFT_111741 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188 E FOMMEDRAFT_106390 nucleoporin K14312 NUP155; nuclear pore complex protein Nup155 E FOMMEDRAFT_153883 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205 E FOMMEDRAFT_165530 hypothetical protein K14307 NUPL1; nucleoporin p58/p45 E FOMMEDRAFT_151374 hypothetical protein K14315 NDC1; nucleoporin NDC1 E FOMMEDRAFT_165850 WD40 repeat-like protein K14299 SEH1; nucleoporin SEH1 E FOMMEDRAFT_17163 hypothetical protein K18715 NUP159; nucleoporin NUP159 E FOMMEDRAFT_148093 hypothetical protein K18716 NUP42; nucleoporin NUP42 E FOMMEDRAFT_158819 hypothetical protein K18716 NUP42; nucleoporin NUP42 E FOMMEDRAFT_110790 hypothetical protein K18719 NUP82; nucleoporin NUP82 E FOMMEDRAFT_141279 hypothetical protein K18721 NUP1; nucleoporin NUP1 E FOMMEDRAFT_114041 EF-hand K16466 CETN3; centrin-3 E FOMMEDRAFT_164723 hypothetical protein K18723 GLE1; nucleoporin GLE1 E FOMMEDRAFT_16975 NTF2-like protein K14284 NXF; nuclear RNA export factor E FOMMEDRAFT_106033 NTF2-like protein K14285 NXT1_2; NTF2-related export protein 1/2 E FOMMEDRAFT_140221 hypothetical protein K18725 POM152; nucleoporin POM152 D Ran-mediated transport factors E FOMMEDRAFT_124946 ras-domain-containing protein K07936 RAN; GTP-binding nuclear protein Ran E FOMMEDRAFT_157464 hypothetical protein K18726 FAF2; FAS-associated factor 2 E FOMMEDRAFT_164470 AAA ATPase K13525 VCP; transitional endoplasmic reticulum ATPase E FOMMEDRAFT_74231 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E FOMMEDRAFT_75265 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E FOMMEDRAFT_18232 hypothetical protein K14290 XPO1; exportin-1 E FOMMEDRAFT_83825 Ran GTPase activator K14319 RANGAP1; Ran GTPase-activating protein 1 D eIF4F and regulatory proteins E FOMMEDRAFT_115963 eukaryotic translation initiation factor 4E member 2 K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_133235 translation initiation factor eIF4e K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_78379 translation initiation factor eIF4e K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_139116 DEAD-domain-containing protein K03257 EIF4A; translation initiation factor 4A E FOMMEDRAFT_89624 P-loop containing nucleoside triphosphate hydrolase protein K03257 EIF4A; translation initiation factor 4A E FOMMEDRAFT_101459 hypothetical protein K03260 EIF4G; translation initiation factor 4G E FOMMEDRAFT_77195 hypothetical protein K03258 EIF4B; translation initiation factor 4B E FOMMEDRAFT_137752 ATP-dependent RNA helicase ded-1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E FOMMEDRAFT_124714 polyadenylate binding protein K13126 PABPC; polyadenylate-binding protein E FOMMEDRAFT_171180 hypothetical protein K13126 PABPC; polyadenylate-binding protein E FOMMEDRAFT_120937 antiviral helicase K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E FOMMEDRAFT_141883 Sec63-domain-containing protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] E FOMMEDRAFT_166285 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence D APOBEC1-ACF complex D Other transport factors E FOMMEDRAFT_88841 hypothetical protein K14411 MSI; RNA-binding protein Musashi E FOMMEDRAFT_90406 EF Tu GTP binding domain-containing protein K14416 HBS1; elongation factor 1 alpha-like protein E FOMMEDRAFT_141911 hypothetical protein K06965 PELO; protein pelota E FOMMEDRAFT_110609 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2 E FOMMEDRAFT_118992 spliceosome complex protein K12867 SYF1; pre-mRNA-splicing factor SYF1 E FOMMEDRAFT_19911 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein E FOMMEDRAFT_110498 RCC1/BLIP-II K11493 RCC1; regulator of chromosome condensation E FOMMEDRAFT_130717 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3 E FOMMEDRAFT_24255 RNA-binding domain-containing protein K28506 GBP2; serine/arginine (SR)-type shuttling mRNA binding protein C Surveillance factors D Surveillance complex E FOMMEDRAFT_79064 peptide chain release factor eRF/aRF subunit 1 K03265 ETF1; peptide chain release factor subunit 1 E FOMMEDRAFT_90457 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3 E FOMMEDRAFT_134134 transcription factor K14327 UPF2; regulator of nonsense transcripts 2 E FOMMEDRAFT_165771 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E FOMMEDRAFT_131457 serine/threonine protein phosphatase 2A K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E FOMMEDRAFT_83251 ARM repeat-containing protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E FOMMEDRAFT_137925 protein phosphatase 2A regulatory subunit PR55 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E FOMMEDRAFT_141432 protein phosphatase 2A regulatory B subunit K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E FOMMEDRAFT_138831 hypothetical protein K14409 SMG7; protein SMG7 E FOMMEDRAFT_168184 GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E FOMMEDRAFT_165083 ARM repeat-containing protein K14844 PUF6; pumilio homology domain family member 6 E FOMMEDRAFT_140050 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein E FOMMEDRAFT_79532 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein E FOMMEDRAFT_103814 myosin 5 K10357 MYO5; myosin V E FOMMEDRAFT_157145 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals D Trans-acting binding proteins E FOMMEDRAFT_140043 translation elongation factor K03231 EEF1A; elongation factor 1-alpha E FOMMEDRAFT_80017 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma D Other mRNA localization factors E FOMMEDRAFT_89130 RNB-domain-containing protein K18748 SSD1; protein SSD1 C mRNA cycle factors D Common to processing body (P body) and stress granule E FOMMEDRAFT_139111 Piwi-domain-containing protein K11593 ELF2C; eukaryotic translation initiation factor 2C E FOMMEDRAFT_142379 Piwi-domain-containing protein K11593 ELF2C; eukaryotic translation initiation factor 2C E FOMMEDRAFT_155728 Piwi-domain-containing protein K11593 ELF2C; eukaryotic translation initiation factor 2C E FOMMEDRAFT_22413 Piwi-domain-containing protein K11593 ELF2C; eukaryotic translation initiation factor 2C E FOMMEDRAFT_87635 Piwi-domain-containing protein K11593 ELF2C; eukaryotic translation initiation factor 2C E FOMMEDRAFT_115963 eukaryotic translation initiation factor 4E member 2 K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_133235 translation initiation factor eIF4e K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_78379 translation initiation factor eIF4e K03259 EIF4E; translation initiation factor 4E E FOMMEDRAFT_137752 ATP-dependent RNA helicase ded-1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E FOMMEDRAFT_24314 DEAD-domain-containing protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E FOMMEDRAFT_168778 hypothetical protein K18749 LSM14; protein LSM14 E FOMMEDRAFT_92836 P-loop containing nucleoside triphosphate hydrolase protein K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E FOMMEDRAFT_116555 ARM repeat-containing protein K18752 TNPO1; transportin-1 E FOMMEDRAFT_138831 hypothetical protein K14409 SMG7; protein SMG7 E FOMMEDRAFT_73172 kinase-like protein K04345 PKA; protein kinase A [EC:2.7.11.11] E FOMMEDRAFT_17882 winged helix DNA-binding domain-containing protein K18757 LARP1; la-related protein 1 D P-body specific factors E FOMMEDRAFT_82947 DCP2-domain-containing protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E FOMMEDRAFT_134329 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E FOMMEDRAFT_21984 Sm-like ribonucleo protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E FOMMEDRAFT_16618 Sm-like ribonucleo protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E FOMMEDRAFT_121373 Sm-like ribonucleo protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E FOMMEDRAFT_82074 Sm-like ribonucleo protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E FOMMEDRAFT_139584 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E FOMMEDRAFT_142880 Sm-like ribonucleo protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E FOMMEDRAFT_103814 myosin 5 K10357 MYO5; myosin V E FOMMEDRAFT_141839 tubulin alpha K07374 TUBA; tubulin alpha E FOMMEDRAFT_87350 Not1-domain-containing protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E FOMMEDRAFT_143204 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E FOMMEDRAFT_147863 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E FOMMEDRAFT_166367 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E FOMMEDRAFT_84633 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E FOMMEDRAFT_143399 CAF1-domain-containing protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E FOMMEDRAFT_78690 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E FOMMEDRAFT_18642 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E FOMMEDRAFT_100603 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E FOMMEDRAFT_134134 transcription factor K14327 UPF2; regulator of nonsense transcripts 2 E FOMMEDRAFT_165771 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3 E FOMMEDRAFT_137613 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 E FOMMEDRAFT_109468 YTH-domain-containing protein K20102 YTHDF; YTH domain-containing family protein D Stress granule specific factors E FOMMEDRAFT_133373 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR E FOMMEDRAFT_124714 polyadenylate binding protein K13126 PABPC; polyadenylate-binding protein E FOMMEDRAFT_171180 hypothetical protein K13126 PABPC; polyadenylate-binding protein E FOMMEDRAFT_114435 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 E FOMMEDRAFT_77544 translation initiation factor eIF-2A K15026 EIF2A; translation initiation factor 2A E FOMMEDRAFT_106182 translation initiation factor eIF-3b K03253 EIF3B; translation initiation factor 3 subunit B E FOMMEDRAFT_139116 DEAD-domain-containing protein K03257 EIF4A; translation initiation factor 4A E FOMMEDRAFT_89624 P-loop containing nucleoside triphosphate hydrolase protein K03257 EIF4A; translation initiation factor 4A E FOMMEDRAFT_126606 DEAD-domain-containing protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E FOMMEDRAFT_77195 hypothetical protein K03258 EIF4B; translation initiation factor 4B E FOMMEDRAFT_101459 hypothetical protein K03260 EIF4G; translation initiation factor 4G E FOMMEDRAFT_122764 G-protein complex beta subunit K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein E FOMMEDRAFT_16975 NTF2-like protein K14284 NXF; nuclear RNA export factor E FOMMEDRAFT_18146 histone deacetylase clr3 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] B mRNA degradation factors C 5'-3' decay D Decapping complex E FOMMEDRAFT_82947 DCP2-domain-containing protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E FOMMEDRAFT_24314 DEAD-domain-containing protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E FOMMEDRAFT_100603 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E FOMMEDRAFT_134329 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E FOMMEDRAFT_21984 Sm-like ribonucleo protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E FOMMEDRAFT_16618 Sm-like ribonucleo protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E FOMMEDRAFT_121373 Sm-like ribonucleo protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E FOMMEDRAFT_82074 Sm-like ribonucleo protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E FOMMEDRAFT_139584 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E FOMMEDRAFT_142880 Sm-like ribonucleo protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases D Other 5'-3' decay factors E FOMMEDRAFT_77962 scavenger mRNA decapping enzyme K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] C 3'-5' decay D Core exosome factors E FOMMEDRAFT_106067 hypothetical protein K07573 CSL4; exosome complex component CSL4 E FOMMEDRAFT_137897 hypothetical protein K03679 RRP4; exosome complex component RRP4 E FOMMEDRAFT_149221 hypothetical protein K03681 RRP40; exosome complex component RRP40 E FOMMEDRAFT_165277 exosome component 4 K11600 RRP41; exosome complex component RRP41 E FOMMEDRAFT_69260 hypothetical protein K12590 RRP46; exosome complex component RRP46 E FOMMEDRAFT_134856 ribosomal protein S5 domain 2-like protein K12587 MTR3; exosome complex component MTR3 E FOMMEDRAFT_22277 ribosomal protein S5 domain 2-like protein K12589 RRP42; exosome complex component RRP42 E FOMMEDRAFT_88508 hypothetical protein K12586 RRP43; exosome complex component RRP43 E FOMMEDRAFT_112158 hypothetical protein K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E FOMMEDRAFT_149467 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] D TRAMP complex E FOMMEDRAFT_139784 Nucleotidyltransferase K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E FOMMEDRAFT_141374 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E FOMMEDRAFT_147876 hypothetical protein K12597 AIR1_2; protein AIR1/2 E FOMMEDRAFT_138021 antiviral helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex E FOMMEDRAFT_120937 antiviral helicase K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E FOMMEDRAFT_108426 TPR-like protein K12600 SKI3; superkiller protein 3 E FOMMEDRAFT_135868 WD40 repeat-like protein K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E FOMMEDRAFT_84633 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E FOMMEDRAFT_87350 Not1-domain-containing protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E FOMMEDRAFT_143204 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E FOMMEDRAFT_147863 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E FOMMEDRAFT_166367 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E FOMMEDRAFT_143399 CAF1-domain-containing protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E FOMMEDRAFT_97041 Rcd1-like protein K12606 RCD1; CCR4-NOT transcription complex subunit 9 E FOMMEDRAFT_169136 P-loop containing nucleoside triphosphate hydrolase protein K12608 CAF16; CCR4-NOT complex subunit CAF16 E FOMMEDRAFT_144582 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 D Pan complex E FOMMEDRAFT_78690 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E FOMMEDRAFT_18642 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E FOMMEDRAFT_78644 hypothetical protein K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] E FOMMEDRAFT_77962 scavenger mRNA decapping enzyme K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E FOMMEDRAFT_171056 hypothetical protein K27407 VTS1; RNA-binding protein VTS1 C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E FOMMEDRAFT_126202 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] E FOMMEDRAFT_72008 ribonuclease H-like protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E FOMMEDRAFT_129179 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E FOMMEDRAFT_97007 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E FOMMEDRAFT_75740 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E FOMMEDRAFT_138072 heat shock protein K04043 dnaK; molecular chaperone DnaK E FOMMEDRAFT_124098 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E FOMMEDRAFT_44964 mitochondrial heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E FOMMEDRAFT_71768 GroEL apical domain-like protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E FOMMEDRAFT_137897 hypothetical protein K03679 RRP4; exosome complex component RRP4 E FOMMEDRAFT_106067 hypothetical protein K07573 CSL4; exosome complex component CSL4 D Cofactors E FOMMEDRAFT_165277 exosome component 4 K11600 RRP41; exosome complex component RRP41 E FOMMEDRAFT_22277 ribosomal protein S5 domain 2-like protein K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 27, 2025