+F Repair protein KO #

  DNA Repair and Recombination Proteins - Flavobacterium psychrophilum JIP02/86

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D FP0033 ogt1; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FP1014 phrB1; Deoxyribodipyrimidine photolyase PhrB1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D FP2041 phrB2; Deoxyribodipyrimidine photolyase PhrB2 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E FP1038 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E FP1665 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FP1101 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D FP0951 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FP2450 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D FP0033 ogt1; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D FP1014 phrB1; Deoxyribodipyrimidine photolyase PhrB1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D FP2041 phrB2; Deoxyribodipyrimidine photolyase PhrB2 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D FP2042 Protein of unknown function related to deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E FP1038 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E FP1665 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FP2354 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E FP1101 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E FP0062 xth; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E FP0876 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E FP1847 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E FP0290 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E FP0849 uvrA2; Excinuclease ABC, A subunit UvrA2 K03701 uvrA; excinuclease ABC subunit A E FP1107 uvrA1; Excinuclease ABC, A subunit UvrA1 K03701 uvrA; excinuclease ABC subunit A E FP0903 uvrB; Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E FP0222 uvrC; Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E FP0868 uvrD; ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FP1561 Protein of unknown function K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FP0290 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E FP1847 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F FP1176 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F FP1175 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F FP1313 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F FP0192 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E FP0395 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E FP1039 MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E FP1147 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E FP0341 dnaE_dnaQ; Probable DNA polymerase III, alpha and epsilon subunits K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E FP1091 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E FP1053 holA; Probable DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E FP0011 holB; Probable DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E FP1195 dnaQ; Probable DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FP1915 Probable DNA polymerase III subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FP1438 Probable DNA polymerase III subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FP0943 Probable exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FP0965 Probable DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E FP1847 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E FP0868 uvrD; ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FP1561 Protein of unknown function K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FP1664 ssb; Single-strand DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein E FP2502 Probable single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E FP2245 recA; Recombinase A K03553 recA; recombination protein RecA E FP2122 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FP2125 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FP0209 ruvC; Crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E FP1853 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E FP2245 recA; Recombinase A K03553 recA; recombination protein RecA E FP0104 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E FP2001 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E FP1010 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FP1553 Protein of unknown function K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FP0876 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E FP0269 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E FP1300 recR; Recombination protein RecR K06187 recR; recombination protein RecR E FP1841 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E FP2122 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FP2125 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FP0209 ruvC; Crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E FP1525 Probable CRISPR-associated (Cas) protein. Cas 1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E FP2211 Protein of unknown function K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F FP0748 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F FP0527 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F FP1975 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F FP1666 hupA; Histone-like bacterial DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta F FP2008 hupB; Histone-like bacterial DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F FP0876 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F FP0269 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F FP1300 recR; Recombination protein RecR K06187 recR; recombination protein RecR F FP1847 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F FP1233 recQ1; ATP-dependent DNA helicase RecQ1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FP2010 recQ2; ATP-dependent DNA helicase RecQ2 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FP0849 uvrA2; Excinuclease ABC, A subunit UvrA2 K03701 uvrA; excinuclease ABC subunit A F FP1107 uvrA1; Excinuclease ABC, A subunit UvrA1 K03701 uvrA; excinuclease ABC subunit A F FP0903 uvrB; Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D FP0389 umuC; UmuC protein K03502 umuC; DNA polymerase V D FP0390 umuD; SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D FP2245 recA; Recombinase A K03553 recA; recombination protein RecA D FP1841 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D FP1664 ssb; Single-strand DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D FP2502 Probable single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FP0245 dinD; DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D FP2243 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D FP0951 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FP2450 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D FP0457 nrdA; Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D FP0458 nrdB; Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D FP1893 fjo19; Protein of unknown function Fjo19 K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
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#Last updated: March 29, 2024