+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Flavobacterium psychrophilum V3-5

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D IA03_00915 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C IA03_09610 GTPase Era K03595 era; GTPase C IA03_06525 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C IA03_00995 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C IA03_02315 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C IA03_02670 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C IA03_05630 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D IA03_00275 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D IA03_03490 RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D IA03_04635 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D IA03_07805 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D IA03_02030 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D IA03_10170 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D IA03_05025 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D IA03_05780 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D IA03_06475 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D IA03_08580 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D IA03_09065 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D IA03_03655 DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D IA03_10250 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D IA03_03680 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D IA03_01515 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D IA03_03250 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D IA03_04165 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D IA03_09790 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D IA03_05845 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C IA03_03740 30S ribosomal protein S6 modification protein RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C IA03_01675 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C IA03_06730 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C IA03_08120 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C IA03_00915 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C IA03_08060 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C IA03_08495 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C IA03_08825 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C IA03_09610 GTPase Era K03595 era; GTPase C IA03_01150 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C IA03_09605 GTP-binding protein Der K03977 engA; GTPase C IA03_06525 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C IA03_11975 GTPase HflX K03665 hflX; GTPase B Other maturation factors C IA03_07940 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C IA03_09095 MFS transporter K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C IA03_01095 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C IA03_02310 hypothetical protein K09748 rimP; ribosome maturation factor RimP C IA03_03020 ribosome-associated protein IOJAP K09710 ybeB; ribosome-associated protein C IA03_12425 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor C IA03_05665 RNA polymerase subunit sigma-54 K05808 hpf; ribosome hibernation promoting factor C IA03_03210 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase C IA03_11810 DNA-binding protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025