+F Repair protein KO #

  DNA Repair and Recombination Proteins - Flavobacterium sediminis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DI487_07325 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DI487_14000 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DI487_14605 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DI487_13530 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DI487_06450 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DI487_07840 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DI487_07325 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DI487_14000 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DI487_14605 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DI487_08705 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DI487_13530 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DI487_04360 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E DI487_05785 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E DI487_06325 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DI487_15620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DI487_10855 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DI487_03835 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DI487_07900 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DI487_14600 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DI487_10970 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E DI487_08445 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DI487_13385 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DI487_14100 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DI487_06910 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DI487_12420 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DI487_14790 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DI487_11535 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DI487_15280 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase D Other MMR factors E DI487_15620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DI487_04980 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DI487_05180 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DI487_07590 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DI487_07595 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DI487_09880 modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DI487_07420 recA; recombinase RecA K03553 recA; recombination protein RecA E DI487_08970 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DI487_08925 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DI487_08595 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DI487_12070 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E DI487_07420 recA; recombinase RecA K03553 recA; recombination protein RecA E DI487_07610 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DI487_10950 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E DI487_15660 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DI487_05785 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DI487_06360 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DI487_03770 recombination protein RecR K06187 recR; recombination protein RecR E DI487_12160 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DI487_08970 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DI487_08925 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DI487_08595 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E DI487_00965 type II CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DI487_14565 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] E Supressor F DI487_02670 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F DI487_04990 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DI487_05785 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DI487_06360 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DI487_03770 recombination protein RecR K06187 recR; recombination protein RecR E Facilitator E Supressor F DI487_02660 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DI487_03365 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DI487_06230 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DI487_08570 SOS mutagenesis and repair protein UmuC K03502 umuC; DNA polymerase V D DI487_08565 peptidase S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D DI487_07420 recA; recombinase RecA K03553 recA; recombination protein RecA D DI487_12160 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DI487_04980 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DI487_05180 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DI487_07590 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DI487_07595 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DI487_05965 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D DI487_06450 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DI487_07840 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DI487_05670 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DI487_06505 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D DI487_11750 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024