+D GENES KO
#
KEGG Orthology (KO) - Gilliamella apis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:gaq00010]
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RAM11_02450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_01605 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_02605 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_06800 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_05875 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RAM11_05055 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RAM11_02600 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RAM11_05980 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RAM11_07125 pykF; pyruvate kinase PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RAM11_08825 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_05905 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D RAM11_04720 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RAM11_00270 agp; bifunctional glucose-1-phosphatase/inositol phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D RAM11_03790 agp; bifunctional glucose-1-phosphatase/inositol phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_10925 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D RAM11_01570 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_03975 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_05735 ascB; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_07420 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_08655 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_09420 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_02455 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RAM11_02150 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
C 00020 Citrate cycle (TCA cycle) [PATH:gaq00020]
D RAM11_11630 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RAM11_11640 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RAM11_11635 icd; NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_10450 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RAM11_10455 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_08825 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RAM11_05905 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:gaq00030]
D RAM11_02450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RAM11_10915 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RAM11_10910 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RAM11_11800 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RAM11_02145 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_04275 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_07540 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_08480 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RAM11_08485 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RAM11_02920 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RAM11_01190 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_02140 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_07535 hxlB; 6-phospho-3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D RAM11_02000 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RAM11_08770 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RAM11_04875 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RAM11_11170 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RAM11_04990 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_03805 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RAM11_00280 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D RAM11_07930 ketohydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RAM11_10290 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RAM11_03580 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RAM11_00275 gluconokinase, GntK/IdnK-type K00851 idnK; gluconokinase [EC:2.7.1.12]
D RAM11_06275 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D RAM11_01605 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_02605 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_06800 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:gaq00040]
D RAM11_01200 hypothetical protein K01728 pel; pectate lyase [EC:4.2.2.2]
D RAM11_01195 hypothetical protein K22994 pelX; pectate disaccharide-lyase [EC:4.2.2.9]
D RAM11_01185 oligogalacturonate lyase family protein K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D RAM11_01175 cupin domain-containing protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D RAM11_03655 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D RAM11_03840 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D RAM11_03660 tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D RAM11_03665 altronate dehydratase family protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D RAM11_03825 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D RAM11_00870 enolase C-terminal domain-like protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D RAM11_10660 D-galactonate dehydratase family protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D RAM11_03835 fructuronate reductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D RAM11_10650 fructuronate reductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D RAM11_02530 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RAM11_05130 3-keto-L-gulonate-6-phosphate decarboxylase UlaD K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D RAM11_05135 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D RAM11_05125 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RAM11_02145 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_04275 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_07540 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_02070 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D RAM11_02075 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RAM11_09075 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D RAM11_09065 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D RAM11_01585 D-lyxose/D-mannose family sugar isomerase K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D RAM11_02435 dihydrodipicolinate synthase family protein K22397 yjhH; 2-dehydro-3-deoxy-D-pentonate aldolase [EC:4.1.2.28]
C 00051 Fructose and mannose metabolism [PATH:gaq00051]
D RAM11_01620 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_01975 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_07045 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_08760 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RAM11_02410 rhmD; L-rhamnonate dehydratase K12661 LRA3; L-rhamnonate dehydratase [EC:4.2.1.90]
D RAM11_02400 yfaU; 2-keto-3-deoxy-L-rhamnonate aldolase K12660 rhmA; 2-dehydro-3-deoxy-L-rhamnonate aldolase [EC:4.1.2.53]
D RAM11_09070 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D RAM11_09075 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D RAM11_09065 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_03465 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RAM11_02075 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RAM11_01605 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_02605 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_06800 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_05875 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RAM11_01190 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_02140 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_01600 fructose PTS transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D RAM11_01595 fructose PTS transporter subunit IIB K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D RAM11_01590 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_03470 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_00910 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_01750 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_06345 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_03375 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RAM11_00925 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_03370 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_06335 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_08785 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_00920 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_03365 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_06330 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:gaq00052]
D RAM11_03780 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RAM11_03785 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RAM11_02530 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RAM11_07560 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D RAM11_07550 PTS sugar transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D RAM11_07555 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component
D RAM11_06835 sugar kinase K21621 fk; tagatose kinase [EC:2.7.1.101]
D RAM11_10935 sugar kinase K21621 fk; tagatose kinase [EC:2.7.1.101]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_03070 tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D RAM11_10945 tagatose bisphosphate family class II aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D RAM11_01970 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D RAM11_03845 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RAM11_00260 agaF; PTS galactosamine/N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D RAM11_00245 agaV; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D RAM11_00250 agaW; PTS N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D RAM11_00255 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D RAM11_00265 nagA; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RAM11_00240 SIS domain-containing protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:gaq00053]
D RAM11_03140 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_05120 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_07955 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_03135 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_05115 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_06785 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_07950 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_03130 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_06790 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_07945 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_05105 ulaG; L-ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D RAM11_05130 3-keto-L-gulonate-6-phosphate decarboxylase UlaD K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D RAM11_05135 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D RAM11_05125 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:gaq00500]
D RAM11_01970 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D RAM11_03845 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RAM11_02530 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RAM11_04580 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_09610 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_08805 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RAM11_00855 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_09405 PTS cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_00850 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_08800 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_09415 PTS cellobiose transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_00845 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_08810 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_09395 celB; PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_01570 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_03975 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_05735 ascB; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_07420 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_08655 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_09420 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RAM11_02455 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RAM11_02150 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D RAM11_01500 treB; PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D RAM11_01505 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RAM11_02450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RAM11_01620 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_01975 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_07045 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:gaq00520]
D RAM11_09355 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RAM11_08735 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RAM11_02455 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RAM11_01780 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D RAM11_01770 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RAM11_01775 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D RAM11_01620 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_01975 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_07045 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RAM11_04405 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RAM11_00695 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RAM11_04410 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RAM11_03380 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D RAM11_01165 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D RAM11_11765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RAM11_04995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RAM11_02150 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_02530 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RAM11_03780 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RAM11_03785 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RAM11_00910 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_01750 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_06345 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_03375 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RAM11_00925 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_03370 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_06335 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_08785 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_00920 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_03365 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_06330 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_02450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RAM11_08760 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
C 00620 Pyruvate metabolism [PATH:gaq00620]
D RAM11_05905 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D RAM11_08825 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_10750 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RAM11_06240 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RAM11_06245 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RAM11_07125 pykF; pyruvate kinase PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RAM11_02750 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RAM11_10280 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RAM11_10285 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RAM11_11360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RAM11_09465 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RAM11_10640 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RAM11_05485 FAD-binding oxidoreductase K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]
D RAM11_04720 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RAM11_00285 thiamine pyrophosphate-binding protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D RAM11_09665 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D RAM11_05045 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D RAM11_05810 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D RAM11_00765 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RAM11_07180 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RAM11_03580 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RAM11_10805 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_11565 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RAM11_10590 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:gaq00630]
D RAM11_11630 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RAM11_11640 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RAM11_09465 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RAM11_03580 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RAM11_04270 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_10545 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_06380 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RAM11_02395 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D RAM11_09055 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D RAM11_07930 ketohydroxyglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RAM11_10290 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RAM11_02280 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RAM11_02270 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:gaq00640]
D RAM11_06240 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RAM11_06245 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_10750 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RAM11_09455 MDR family oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D RAM11_02750 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RAM11_10280 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RAM11_10285 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RAM11_11360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RAM11_09465 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RAM11_10455 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RAM11_10450 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RAM11_04720 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RAM11_02740 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D RAM11_02395 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D RAM11_09055 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:gaq00650]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RAM11_10750 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RAM11_05905 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D RAM11_09005 3-hydroxybutyrate oligomer hydrolase family protein K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]
D RAM11_04755 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05645 ilvI; acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05650 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RAM11_04750 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:gaq00660]
D RAM11_04755 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05645 ilvI; acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05650 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RAM11_04750 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RAM11_10455 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RAM11_10450 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RAM11_10600 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RAM11_10605 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RAM11_10595 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:gaq00562]
D RAM11_00630 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RAM11_05875 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:gaq00190]
D RAM11_11560 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RAM11_11555 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RAM11_11550 proton-conducting transporter membrane subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RAM11_11545 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RAM11_11540 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RAM11_01825 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_10445 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RAM11_10440 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RAM11_00720 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RAM11_00730 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RAM11_00725 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RAM11_00715 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RAM11_00735 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RAM11_00700 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RAM11_00710 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RAM11_00705 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RAM11_05065 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RAM11_07130 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:gaq00710]
D RAM11_02600 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RAM11_05055 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RAM11_01605 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_02605 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_06800 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_08480 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RAM11_02920 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RAM11_01190 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_02140 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RAM11_05875 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RAM11_02145 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_04275 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_07540 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RAM11_08485 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RAM11_11565 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
C 00720 Other carbon fixation pathways [PATH:gaq00720]
D RAM11_05905 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D RAM11_11565 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_10450 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RAM11_10455 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RAM11_11635 icd; NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RAM11_11640 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RAM11_02750 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RAM11_10280 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RAM11_10285 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RAM11_11360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RAM11_04435 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D RAM11_09195 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RAM11_01905 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RAM11_06245 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RAM11_06240 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:gaq00680]
D RAM11_02280 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RAM11_02270 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D RAM11_10545 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RAM11_11565 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RAM11_01605 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_02605 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_06800 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_07535 hxlB; 6-phospho-3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D RAM11_06240 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RAM11_06245 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RAM11_05980 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RAM11_02915 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RAM11_06445 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RAM11_02320 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:gaq00910]
D RAM11_00215 nirB; nitrite reductase large subunit NirB K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D RAM11_00210 nirD; nitrite reductase small subunit NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_03300 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RAM11_03295 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RAM11_06070 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D RAM11_11785 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D RAM11_03485 carbonic anhydrase family protein K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:gaq00920]
D RAM11_01955 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RAM11_06200 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RAM11_02390 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D RAM11_06995 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RAM11_03885 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RAM11_02110 DMSO/selenate family reductase complex A subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D RAM11_02115 DMSO/selenate family reductase complex B subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D RAM11_02120 DmsC/YnfH family molybdoenzyme membrane anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:gaq00061]
D RAM11_02750 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RAM11_10280 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RAM11_10285 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RAM11_11360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RAM11_09465 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RAM11_02730 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RAM11_09930 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D RAM11_09935 acyl carrier protein K02078 acpP; acyl carrier protein
D RAM11_02720 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RAM11_02715 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_09315 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_09320 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_06130 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_09980 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_02735 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_09995 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_02725 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_09990 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_08850 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D RAM11_01800 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RAM11_00325 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:gaq00071]
D RAM11_03390 aas; bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:gaq00561]
D RAM11_06380 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RAM11_02740 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D RAM11_02285 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RAM11_02710 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RAM11_06290 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RAM11_08245 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RAM11_02755 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:gaq00564]
D RAM11_03400 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RAM11_02285 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RAM11_06290 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RAM11_08245 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RAM11_02755 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RAM11_03390 aas; bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RAM11_11310 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RAM11_07725 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RAM11_08430 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RAM11_09080 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RAM11_06930 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RAM11_01875 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D RAM11_04805 phosphatase PAP2 family protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D RAM11_10480 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:gaq00600]
D RAM11_08735 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D RAM11_10475 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:gaq00230]
D RAM11_10490 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RAM11_04990 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_03805 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RAM11_11340 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RAM11_10000 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RAM11_01105 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D RAM11_11855 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D RAM11_05910 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RAM11_09140 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RAM11_09145 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RAM11_05555 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RAM11_05850 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RAM11_10005 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RAM11_07410 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RAM11_04955 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RAM11_05020 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RAM11_09100 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RAM11_04985 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RAM11_00330 ppnP; pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D RAM11_05455 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RAM11_11165 nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D RAM11_08225 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RAM11_05765 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RAM11_05255 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RAM11_02980 XTP/dITP diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RAM11_06415 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D RAM11_00785 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RAM11_06250 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RAM11_05815 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RAM11_03625 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RAM11_03620 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RAM11_11795 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D RAM11_09135 dgt; dGTPase K01129 dgt; dGTPase [EC:3.1.5.1]
D RAM11_10820 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D RAM11_05095 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RAM11_07135 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RAM11_03765 relA; GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D RAM11_10045 class I adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D RAM11_01110 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RAM11_04975 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RAM11_02330 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D RAM11_04605 bifunctional UDP-sugar hydrolase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RAM11_04970 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RAM11_00100 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RAM11_03275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RAM11_10485 cpdA; 3',5'-cyclic-AMP phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D RAM11_11220 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D RAM11_01480 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D RAM11_06085 allC; allantoate deiminase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RAM11_06110 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D RAM11_06075 allE; (S)-ureidoglycine aminohydrolase K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D RAM11_11495 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RAM11_11490 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RAM11_11485 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D RAM11_06065 allD; ureidoglycolate dehydrogenase K00073 allD; ureidoglycolate dehydrogenase (NAD+) [EC:1.1.1.350]
D RAM11_06070 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:gaq00240]
D RAM11_01890 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RAM11_02680 amidohydrolase/deacetylase family metallohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RAM11_07155 hypothetical protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D RAM11_08635 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RAM11_11375 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RAM11_02010 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RAM11_05255 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RAM11_03275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RAM11_05670 pyrG; CTP synthase (glutamine hydrolyzing) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RAM11_08975 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RAM11_04955 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RAM11_05020 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RAM11_11165 nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D RAM11_00330 ppnP; pyrimidine/purine nucleoside phosphorylase K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D RAM11_00820 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RAM11_04605 bifunctional UDP-sugar hydrolase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RAM11_04970 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D RAM11_00505 PfkB family carbohydrate kinase K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D RAM11_00500 pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D RAM11_04960 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D RAM11_02330 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D RAM11_11795 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D RAM11_10400 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RAM11_03625 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RAM11_03620 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RAM11_10820 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D RAM11_11400 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RAM11_01940 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RAM11_05985 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RAM11_02825 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RAM11_07325 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RAM11_10990 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:gaq00250]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_06600 type II asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RAM11_06060 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D RAM11_00935 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RAM11_09890 bifunctional aspartate transaminase/aspartate 4-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D RAM11_03200 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RAM11_06435 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RAM11_06440 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RAM11_01110 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RAM11_05850 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RAM11_03300 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RAM11_03295 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_01890 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RAM11_04405 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RAM11_11340 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:gaq00260]
D RAM11_10315 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RAM11_10980 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RAM11_01760 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RAM11_10975 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RAM11_10970 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RAM11_01020 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D RAM11_10545 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RAM11_03580 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RAM11_06380 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RAM11_05980 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RAM11_02915 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RAM11_06445 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RAM11_02320 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RAM11_10990 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_08430 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RAM11_03025 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RAM11_04735 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RAM11_07295 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D RAM11_01045 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RAM11_04640 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RAM11_04635 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:gaq00270]
D RAM11_01955 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RAM11_06200 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RAM11_00605 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RAM11_07530 mmuM; homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D RAM11_01910 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RAM11_02775 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RAM11_07235 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RAM11_05455 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RAM11_11875 MtnX-like HAD-IB family phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RAM11_03520 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RAM11_04820 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RAM11_10315 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RAM11_10980 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RAM11_01760 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RAM11_02390 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D RAM11_06995 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RAM11_03885 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RAM11_00095 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RAM11_04745 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RAM11_07195 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RAM11_05930 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_04720 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RAM11_09890 bifunctional aspartate transaminase/aspartate 4-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D RAM11_01045 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RAM11_03025 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RAM11_02915 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RAM11_06445 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:gaq00280]
D RAM11_04745 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_09465 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:gaq00290]
D RAM11_04735 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RAM11_10600 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RAM11_10605 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RAM11_10595 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RAM11_04755 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05645 ilvI; acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05650 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RAM11_04750 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RAM11_04910 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RAM11_02425 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RAM11_04740 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RAM11_04745 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RAM11_03200 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RAM11_10590 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:gaq00300]
D RAM11_10315 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RAM11_10980 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RAM11_01760 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RAM11_05280 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_05545 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_07935 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_08215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RAM11_04570 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RAM11_10770 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RAM11_05580 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RAM11_05150 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RAM11_05145 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RAM11_10885 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RAM11_10880 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:gaq00310]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_01045 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RAM11_03315 lysA; diaminopimelate decarboxylase K23385 dokD; D-ornithine/D-lysine decarboxylase [EC:4.1.1.116]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
C 00220 Arginine biosynthesis [PATH:gaq00220]
D RAM11_01880 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RAM11_06435 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RAM11_06440 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RAM11_11495 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RAM11_11490 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RAM11_11485 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_01890 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RAM11_06070 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_03200 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RAM11_02895 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D RAM11_06430 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RAM11_06425 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RAM11_10770 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RAM11_06720 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:gaq00330]
D RAM11_03080 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RAM11_08865 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RAM11_06405 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RAM11_06395 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:gaq00340]
D RAM11_07655 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RAM11_07690 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D RAM11_07680 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D RAM11_07675 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RAM11_07685 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RAM11_07670 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07660 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:gaq00350]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:gaq00360]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00380 Tryptophan metabolism
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:gaq00400]
D RAM11_11845 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RAM11_11840 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RAM11_02290 aroD; type I 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D RAM11_02885 aroL; shikimate kinase AroL K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RAM11_04290 aroK; shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RAM11_08980 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RAM11_10205 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RAM11_04620 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RAM11_04625 trpD; bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D RAM11_04630 trpCF; bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D RAM11_04640 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RAM11_04635 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RAM11_00690 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D RAM11_10340 pheA; bifunctional chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:gaq00410]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RAM11_07810 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RAM11_07325 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00430 Taurine and hypotaurine metabolism [PATH:gaq00430]
D RAM11_09390 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RAM11_06245 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RAM11_06240 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D RAM11_05395 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:gaq00450]
D RAM11_03885 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RAM11_00605 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RAM11_01910 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RAM11_09680 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RAM11_02685 DgaE family pyridoxal phosphate-dependent ammonia lyase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D RAM11_10510 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:gaq00460]
D RAM11_04580 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_09610 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_08805 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RAM11_09390 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RAM11_06600 type II asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RAM11_06060 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D RAM11_10545 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:gaq00470]
D RAM11_05600 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RAM11_10845 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RAM11_01045 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RAM11_02780 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RAM11_10870 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RAM11_07295 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D RAM11_05150 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RAM11_05145 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RAM11_03315 lysA; diaminopimelate decarboxylase K23385 dokD; D-ornithine/D-lysine decarboxylase [EC:4.1.1.116]
D RAM11_03325 alanine/ornithine racemase family PLP-dependent enzyme K21898 orr; ornithine racemase [EC:5.1.1.12]
C 00480 Glutathione metabolism [PATH:gaq00480]
D RAM11_09390 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RAM11_09475 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D RAM11_07195 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RAM11_05930 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RAM11_07850 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RAM11_00585 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D RAM11_04085 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RAM11_06420 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D RAM11_03285 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RAM11_04190 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D RAM11_11635 icd; NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RAM11_11800 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RAM11_10915 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RAM11_00085 gss; bifunctional glutathionylspermidine amidase/synthase K01460 gsp; glutathionylspermidine amidase/synthetase [EC:3.5.1.78 6.3.1.8]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:gaq00511]
D RAM11_08735 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RAM11_06595 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
C 00540 Lipopolysaccharide biosynthesis [PATH:gaq00540]
D RAM11_01805 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RAM11_10825 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RAM11_11290 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RAM11_09185 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RAM11_01810 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RAM11_08955 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RAM11_08275 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RAM11_08745 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RAM11_08945 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RAM11_02550 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RAM11_02830 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RAM11_04130 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D RAM11_04180 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D RAM11_02215 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D RAM11_08280 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D RAM11_08290 rfaC; lipopolysaccharide heptosyltransferase RfaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D RAM11_08285 rfaF; ADP-heptose--LPS heptosyltransferase RfaF K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D RAM11_10560 rfaP; lipopolysaccharide core heptose(I) kinase RfaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D RAM11_08665 cptA; phosphoethanolamine transferase CptA K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D RAM11_10790 lipopolysaccharide core heptose(II) kinase RfaY K02850 waaY; heptose II phosphotransferase [EC:2.7.1.-]
D RAM11_10555 glycosyltransferase family 4 protein K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D RAM11_09250 glycosyltransferase K03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:gaq00541]
D RAM11_02530 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RAM11_03785 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RAM11_09270 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RAM11_09275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RAM11_09265 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RAM11_09260 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RAM11_08760 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RAM11_04410 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:gaq00550]
D RAM11_11765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RAM11_04995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RAM11_10850 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RAM11_10870 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RAM11_10885 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RAM11_10845 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RAM11_10880 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RAM11_11315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RAM11_05315 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RAM11_10875 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RAM11_01030 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RAM11_09550 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RAM11_11675 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RAM11_05250 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RAM11_01265 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RAM11_10890 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RAM11_01275 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RAM11_10380 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:gaq00552]
D RAM11_05315 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:gaq00543]
D RAM11_01955 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:gaq00730]
D RAM11_04245 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RAM11_00535 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RAM11_11085 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D RAM11_04490 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RAM11_04255 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RAM11_04250 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RAM11_02560 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RAM11_05190 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D RAM11_00100 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RAM11_06055 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:gaq00740]
D RAM11_04810 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RAM11_10960 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RAM11_05165 yigB; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D RAM11_08395 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D RAM11_04135 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RAM11_07580 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RAM11_00970 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RAM11_07315 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D RAM11_10520 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D RAM11_04255 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RAM11_10490 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RAM11_05995 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:gaq00750]
D RAM11_00140 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D RAM11_01555 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D RAM11_06445 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RAM11_10970 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RAM11_06015 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RAM11_06010 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:gaq00760]
D RAM11_04090 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RAM11_09100 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RAM11_04985 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RAM11_04150 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D RAM11_09755 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D RAM11_04955 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RAM11_05020 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RAM11_05425 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RAM11_03275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RAM11_11035 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RAM11_11835 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RAM11_01035 cobB; NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RAM11_01870 nadK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RAM11_11175 pntA; Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RAM11_11180 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:gaq00770]
D RAM11_04755 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05645 ilvI; acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RAM11_05650 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RAM11_04750 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D RAM11_04910 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RAM11_02425 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RAM11_04740 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RAM11_07815 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RAM11_07810 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RAM11_05220 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D RAM11_01935 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RAM11_03275 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RAM11_03775 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RAM11_08545 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RAM11_09280 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RAM11_09900 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RAM11_09010 ACP phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D RAM11_04745 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RAM11_07325 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00780 Biotin metabolism [PATH:gaq00780]
D RAM11_06130 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_09980 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_02735 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_09995 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_02725 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_09990 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_01800 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RAM11_00325 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RAM11_01985 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D RAM11_05005 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:gaq00785]
D RAM11_08830 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RAM11_08835 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_08825 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
C 00790 Folate biosynthesis [PATH:gaq00790]
D RAM11_00965 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RAM11_11585 nudB; dihydroneopterin triphosphate diphosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D RAM11_05940 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RAM11_02350 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RAM11_02155 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RAM11_03760 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RAM11_11355 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RAM11_04810 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RAM11_10665 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D RAM11_10670 pabB; aminodeoxychorismate synthase component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D RAM11_05465 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RAM11_05460 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RAM11_05235 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RAM11_05230 queF; preQ(1) synthase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RAM11_02335 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RAM11_11250 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RAM11_11240 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RAM11_10305 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RAM11_05960 moeA; molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RAM11_01015 mobA; molybdenum cofactor guanylyltransferase MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:gaq00670]
D RAM11_03760 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RAM11_04435 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D RAM11_09195 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RAM11_10545 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RAM11_10005 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RAM11_00300 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RAM11_02825 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RAM11_01905 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RAM11_04475 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:gaq00860]
D RAM11_00955 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RAM11_07370 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RAM11_07975 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RAM11_11025 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RAM11_05845 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RAM11_05840 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RAM11_02930 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RAM11_05210 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RAM11_04415 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D RAM11_02545 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RAM11_05835 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D RAM11_00200 cysG; siroheme synthase CysG K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RAM11_07200 pyridoxamine 5'-phosphate oxidase family protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:gaq00130]
D RAM11_02130 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RAM11_11575 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D RAM11_05995 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RAM11_10360 FAD-dependent oxidoreductase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D RAM11_05760 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RAM11_04155 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RAM11_01845 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:gaq00900]
D RAM11_04490 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RAM11_01990 ispC; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RAM11_09780 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RAM11_07380 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RAM11_09775 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RAM11_00130 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RAM11_00985 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RAM11_05995 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RAM11_04495 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RAM11_02490 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RAM11_11315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RAM11_08480 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:gaq00523]
D RAM11_09270 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RAM11_09275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RAM11_09265 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RAM11_09260 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RAM11_11515 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
D RAM11_09275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:gaq00946]
D RAM11_04580 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_09610 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_08805 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:gaq00332]
D RAM11_06405 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RAM11_06395 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:gaq00261]
D RAM11_10315 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RAM11_10980 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RAM11_01760 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RAM11_05280 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_05545 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_07935 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RAM11_08215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:gaq00521]
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RAM11_05790 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RAM11_00630 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RAM11_09270 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RAM11_09275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RAM11_09265 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RAM11_09260 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RAM11_08910 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:gaq00525]
D RAM11_09270 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RAM11_09275 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:gaq00401]
D RAM11_00690 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RAM11_04620 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RAM11_02720 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RAM11_02725 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_09990 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_00325 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RAM11_02730 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RAM11_09930 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D RAM11_09935 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:gaq00999]
D RAM11_02775 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RAM11_04580 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_09610 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RAM11_08805 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D RAM11_03325 alanine/ornithine racemase family PLP-dependent enzyme K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:gaq00362]
D RAM11_04815 2-hydroxymuconate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RAM11_00510 fdx; ISC system 2Fe-2S type ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
C 00627 Aminobenzoate degradation [PATH:gaq00627]
D RAM11_10640 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RAM11_05995 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:gaq00625]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D RAM11_04815 2-hydroxymuconate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:gaq00633]
D RAM11_03795 nfsA; oxygen-insensitive NADPH nitroreductase K10678 nfsA; nitroreductase [EC:1.-.-.-]
D RAM11_10580 nfsB; oxygen-insensitive NAD(P)H nitroreductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D RAM11_11495 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RAM11_11490 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RAM11_11485 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D RAM11_04815 2-hydroxymuconate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:gaq00626]
D RAM11_03115 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RAM11_03220 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:gaq03020]
D RAM11_02630 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RAM11_02635 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RAM11_00365 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RAM11_05090 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:gaq03010]
D RAM11_08970 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RAM11_02020 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RAM11_00460 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RAM11_00370 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RAM11_00405 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RAM11_09370 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RAM11_02055 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RAM11_00420 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RAM11_05340 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RAM11_00495 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RAM11_02060 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RAM11_00380 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RAM11_00425 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RAM11_10140 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RAM11_03355 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RAM11_00445 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RAM11_09380 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RAM11_00470 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RAM11_02595 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RAM11_11020 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RAM11_02615 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RAM11_00475 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RAM11_00490 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RAM11_00485 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RAM11_00430 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RAM11_00415 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RAM11_02625 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RAM11_09385 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RAM11_02620 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RAM11_02610 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RAM11_05335 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RAM11_00440 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RAM11_00395 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RAM11_00455 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RAM11_00360 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RAM11_00410 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RAM11_03340 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RAM11_07065 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RAM11_00180 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RAM11_00465 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RAM11_00480 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RAM11_00435 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RAM11_10920 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RAM11_00175 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RAM11_02870 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RAM11_00450 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RAM11_00400 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RAM11_03875 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RAM11_02705 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RAM11_02865 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RAM11_11055 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RAM11_07060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RAM11_00385 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:gaq00970]
D RAM11_06360 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RAM11_02225 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RAM11_11730 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RAM11_01095 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RAM11_07360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RAM11_01900 tRNA-Met K14230 tRNA-Met; tRNA Met
D RAM11_04645 tRNA-Met K14230 tRNA-Met; tRNA Met
D RAM11_03240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RAM11_00955 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RAM11_11860 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RAM11_10700 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RAM11_11590 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RAM11_04095 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RAM11_02960 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RAM11_02955 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RAM11_07050 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RAM11_10735 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RAM11_02685 DgaE family pyridoxal phosphate-dependent ammonia lyase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D RAM11_10325 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RAM11_10510 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RAM11_00300 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RAM11_07805 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RAM11_05440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RAM11_00975 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RAM11_00805 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RAM11_08690 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RAM11_03015 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RAM11_00125 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RAM11_07070 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RAM11_07075 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RAM11_00145 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RAM11_04265 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:gaq03060]
D RAM11_00390 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RAM11_03250 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RAM11_11090 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RAM11_11530 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RAM11_11525 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RAM11_11535 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RAM11_11040 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RAM11_03735 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RAM11_03405 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RAM11_02500 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RAM11_01070 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RAM11_04175 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RAM11_10020 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RAM11_00980 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:gaq04122]
D RAM11_00535 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RAM11_09560 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RAM11_01155 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D RAM11_01785 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D RAM11_01790 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D RAM11_09790 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RAM11_05860 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RAM11_11240 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RAM11_02335 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RAM11_11245 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D RAM11_11615 molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D RAM11_11250 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RAM11_10305 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D RAM11_11085 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:gaq03018]
D RAM11_02815 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RAM11_02365 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RAM11_11815 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RAM11_10135 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RAM11_06660 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RAM11_04460 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RAM11_10125 DEAD/DEAH family ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RAM11_06165 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RAM11_11805 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_00895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RAM11_01665 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RAM11_01130 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RAM11_07130 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RAM11_11200 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:gaq03030]
D RAM11_07170 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RAM11_02745 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RAM11_06180 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RAM11_11395 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RAM11_05430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RAM11_05200 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D RAM11_07845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RAM11_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RAM11_04690 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RAM11_11015 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_07175 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RAM11_01815 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:gaq03410]
D RAM11_00155 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RAM11_00830 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RAM11_10345 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RAM11_11670 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RAM11_04200 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RAM11_00685 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RAM11_07260 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RAM11_08600 nfo; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_03045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:gaq03420]
D RAM11_07510 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RAM11_06285 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RAM11_09155 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RAM11_06935 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RAM11_05170 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:gaq03430]
D RAM11_05050 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RAM11_01140 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D RAM11_02900 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D RAM11_05170 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RAM11_06975 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RAM11_00680 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RAM11_04500 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RAM11_03045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_02745 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RAM11_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RAM11_06180 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RAM11_05430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RAM11_11395 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RAM11_07170 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RAM11_07845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RAM11_05200 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RAM11_04280 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:gaq03440]
D RAM11_03045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RAM11_07010 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RAM11_06295 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RAM11_10690 recA; recombinase RecA K03553 recA; recombination protein RecA
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_06190 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RAM11_06195 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RAM11_05100 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RAM11_10105 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RAM11_00745 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RAM11_09745 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RAM11_02745 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RAM11_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RAM11_06180 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RAM11_05430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RAM11_11395 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RAM11_07170 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RAM11_07845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RAM11_05200 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D RAM11_11255 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RAM11_09375 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D RAM11_06230 priC; primosomal replication protein PriC K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:gaq03250]
D RAM11_00570 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:gaq02010]
D RAM11_09170 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RAM11_09175 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D RAM11_09180 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RAM11_09160 modF; molybdate ABC transporter ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D RAM11_08685 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D RAM11_08680 thiP; thiamine/thiamine pyrophosphate ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RAM11_08675 thiQ; thiamine ABC transporter ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RAM11_08415 extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RAM11_08400 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D RAM11_08405 potH; putrescine ABC transporter permease PotH K11075 potH; putrescine transport system permease protein
D RAM11_08410 potG; putrescine ABC transporter ATP-binding subunit PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RAM11_04040 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D RAM11_04045 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RAM11_04050 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RAM11_04035 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RAM11_04055 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RAM11_04870 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_06820 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_07025 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_04865 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_06830 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_07035 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_04860 rbsA; ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_06825 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_07030 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_04855 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D RAM11_08570 lysine/arginine/ornithine ABC transporter substrate-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D RAM11_08560 hisM; histidine ABC transporter permease HisM K10015 hisM; histidine transport system permease protein
D RAM11_08565 hisQ; histidine ABC transporter permease HisQ K10016 hisQ; histidine transport system permease protein
D RAM11_06950 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein
D RAM11_06940 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D RAM11_06945 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D RAM11_06955 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_09725 glutamate/aspartate ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D RAM11_09735 ABC transporter permease subunit K10002 gltK; glutamate/aspartate transport system permease protein
D RAM11_09730 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D RAM11_09740 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_03955 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D RAM11_03940 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D RAM11_03945 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_02200 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_04075 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_05500 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_07280 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_02205 metI; methionine ABC transporter permease MetI K02072 metI; D-methionine transport system permease protein
D RAM11_04060 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RAM11_02210 metN; methionine ABC transporter ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_04065 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_05495 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_11455 urtA; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D RAM11_11460 urtB; urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein
D RAM11_11465 urtC; urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein
D RAM11_11470 urtD; urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D RAM11_11475 urtE; urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein
D RAM11_02370 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D RAM11_02375 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D RAM11_02380 sapD; putrescine export ABC transporter ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D RAM11_02385 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D RAM11_06655 nikA; nickel ABC transporter substrate-binding protein K15584 nikA; nickel transport system substrate-binding protein
D RAM11_06650 ABC transporter permease subunit K15585 nikB; nickel transport system permease protein
D RAM11_06645 nikC; nickel ABC transporter permease subunit NikC K15586 nikC; nickel transport system permease protein
D RAM11_06640 ABC transporter ATP-binding protein K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D RAM11_06635 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D RAM11_11440 extracellular solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D RAM11_11435 yejB; microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D RAM11_11430 microcin C ABC transporter permease K13895 yejE; microcin C transport system permease protein
D RAM11_11425 yejF; microcin C ABC transporter ATP-binding protein YejF K13896 yejF; microcin C transport system ATP-binding protein
D RAM11_09870 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D RAM11_09865 fhuB; Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D RAM11_09875 ABC transporter ATP-binding protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D RAM11_11685 znuA; zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D RAM11_11695 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D RAM11_11690 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RAM11_04710 metal ABC transporter substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D RAM11_04700 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein
D RAM11_04695 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D RAM11_04705 manganese/iron ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D RAM11_00770 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RAM11_07495 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D RAM11_07505 lolC; lipoprotein-releasing ABC transporter permease subunit LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D RAM11_07500 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RAM11_07855 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RAM11_07860 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RAM11_10620 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RAM11_01060 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RAM11_01065 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RAM11_03165 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_05355 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_06875 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_03170 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_05360 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_06880 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_09240 msbA; lipid A ABC transporter ATP-binding protein/permease MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RAM11_09245 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RAM11_11125 peptidase domain-containing ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D RAM11_10375 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RAM11_09690 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D RAM11_09685 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D RAM11_01000 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D RAM11_00315 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D RAM11_07205 SbmA/BacA-like family transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:gaq02060]
D RAM11_02460 ptsI; phosphoenolpyruvate-protein phosphotransferase PtsI K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RAM11_02465 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr
D RAM11_07720 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RAM11_02455 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RAM11_01780 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D RAM11_02150 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D RAM11_01575 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_03980 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_05740 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_07425 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_08650 glucose PTS transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_01500 treB; PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D RAM11_00855 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_09405 PTS cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_00850 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_08800 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_09415 PTS cellobiose transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_00845 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_08810 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_09395 celB; PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_00910 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_01750 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_06345 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_03375 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RAM11_00925 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_03370 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_06335 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_08785 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_00920 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_03365 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_06330 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_01725 PTS sugar transporter subunit IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-]
D RAM11_01730 PTS sugar transporter subunit IIC K19508 gfrC; fructoselysine/glucoselysine PTS system EIIC component
D RAM11_01735 PTS system mannose/fructose/sorbose family transporter subunit IID K19509 gfrD; fructoselysine/glucoselysine PTS system EIID component
D RAM11_00260 agaF; PTS galactosamine/N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D RAM11_00245 agaV; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D RAM11_00250 agaW; PTS N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D RAM11_00255 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D RAM11_07560 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D RAM11_07550 PTS sugar transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D RAM11_07555 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component
D RAM11_03140 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_05120 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_07955 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_03135 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_05115 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_06785 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_07950 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_03130 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_06790 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_07945 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_03460 fruB; fused PTS fructose transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D RAM11_01590 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_03470 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_01595 fructose PTS transporter subunit IIB K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D RAM11_01600 fructose PTS transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D RAM11_03465 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:gaq03070]
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_11530 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RAM11_11525 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RAM11_03250 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RAM11_11090 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RAM11_00390 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RAM11_11535 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RAM11_11040 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RAM11_03735 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RAM11_01070 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RAM11_03405 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RAM11_02500 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RAM11_04175 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RAM11_00060 vWA domain-containing protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:gaq02020]
D RAM11_07315 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D RAM11_10520 phosphatase PAP2 family protein K09474 phoN; acid phosphatase (class A) [EC:3.1.3.2]
D RAM11_11075 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D RAM11_11080 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D RAM11_11870 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA
D RAM11_05325 pmrB; two-component system sensor histidine kinase PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D RAM11_05320 pmrA; two-component system response regulator PmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D RAM11_08300 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RAM11_08305 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RAM11_01375 flhD; flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D RAM11_01380 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D RAM11_01365 flagellin K02406 fliC; flagellin
D RAM11_01370 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D RAM11_01385 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D RAM11_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RAM11_03595 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_00790 VanW family protein K18346 vanW; vancomycin resistance protein VanW
D RAM11_08385 TonB-dependent siderophore receptor K19611 fepA; ferric enterobactin receptor
D RAM11_03925 sensor histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D RAM11_03930 response regulator K07702 dpiA; two-component system, CitB family, response regulator CitB
D RAM11_03910 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D RAM11_03905 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D RAM11_03900 citE; citrate (pro-3S)-lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RAM11_03895 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D RAM11_03890 citX; citrate lyase holo-[acyl-carrier protein] synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D RAM11_03990 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D RAM11_10810 dcuS; DcuS/MalK family sensor histidine kinase K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D RAM11_10815 response regulator K11615 malR; two-component system, CitB family, response regulator MalR
D RAM11_10805 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RAM11_10800 2-hydroxycarboxylate transporter family protein K11616 maeN; malate:Na+ symporter
D RAM11_00185 narX; nitrate/nitrite two-component system sensor histidine kinase NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D RAM11_00190 narL; two-component system response regulator NarL K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D RAM11_02275 fdxH; formate dehydrogenase subunit beta K08349 fdnH; formate dehydrogenase-N, beta subunit
D RAM11_11410 hypothetical protein K00246 frdC; succinate dehydrogenase subunit C
D RAM11_11415 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D RAM11_10705 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RAM11_03610 glnD; bifunctional uridylyltransferase/uridylyl-removing protein GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RAM11_11830 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D RAM11_03425 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RAM11_03430 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_10615 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RAM11_09740 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_09735 ABC transporter permease subunit K10002 gltK; glutamate/aspartate transport system permease protein
D RAM11_09730 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D RAM11_09725 glutamate/aspartate ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D RAM11_11320 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RAM11_10445 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RAM11_10440 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_01455 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:gaq02024]
D RAM11_04820 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RAM11_01130 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RAM11_04620 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RAM11_11845 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RAM11_01375 flhD; flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D RAM11_01380 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D RAM11_03320 APC family permease K20265 gadC; glutamate:GABA antiporter
D RAM11_01200 hypothetical protein K01728 pel; pectate lyase [EC:4.2.2.2]
D RAM11_11320 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RAM11_03710 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RAM11_04810 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RAM11_10960 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RAM11_03110 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RAM11_03100 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RAM11_03095 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RAM11_03090 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RAM11_03070 tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D RAM11_11040 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RAM11_03250 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RAM11_11090 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RAM11_00390 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RAM11_11535 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RAM11_03735 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RAM11_01070 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RAM11_03405 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RAM11_02500 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:gaq02030]
D RAM11_04870 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_06820 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_07025 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_01335 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RAM11_01305 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D RAM11_01300 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RAM11_01385 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D RAM11_01390 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:gaq02040]
D RAM11_01345 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RAM11_01340 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RAM11_01335 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RAM11_01330 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D RAM11_01325 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RAM11_01320 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D RAM11_01310 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D RAM11_01305 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D RAM11_01300 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RAM11_01295 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RAM11_01290 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RAM11_01285 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RAM11_01280 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RAM11_01470 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RAM11_01465 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RAM11_01450 flgA; flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D RAM11_01445 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D RAM11_01440 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RAM11_01435 flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D RAM11_01430 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D RAM11_01425 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D RAM11_01420 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D RAM11_01415 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RAM11_01410 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RAM11_01405 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D RAM11_01395 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RAM11_01400 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D RAM11_01365 flagellin K02406 fliC; flagellin
D RAM11_01360 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D RAM11_01355 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D RAM11_01350 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT
D RAM11_01385 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D RAM11_01390 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RAM11_01455 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D RAM11_01460 flgN; flagellar export chaperone FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D RAM11_03955 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D RAM11_11010 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RAM11_01375 flhD; flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D RAM11_01380 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D RAM11_10615 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RAM11_01370 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:gaq01501]
D RAM11_09670 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RAM11_09355 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_06760 RtcB family protein K18148 rtcB; release factor H-coupled RctB family protein
D RAM11_04835 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RAM11_04840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_09550 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RAM11_01265 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RAM11_10890 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:gaq01502]
D RAM11_10845 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RAM11_05600 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RAM11_10880 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RAM11_10875 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RAM11_00790 VanW family protein K18346 vanW; vancomycin resistance protein VanW
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:gaq01503]
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_05325 pmrB; two-component system sensor histidine kinase PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D RAM11_05320 pmrA; two-component system response regulator PmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D RAM11_02370 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D RAM11_02375 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D RAM11_02380 sapD; putrescine export ABC transporter ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D RAM11_02385 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D RAM11_11075 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D RAM11_11080 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D RAM11_01245 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RAM11_01005 DsbA family protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RAM11_00570 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RAM11_04835 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RAM11_04840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_01805 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RAM11_03595 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:gaq01000]
C 01001 Protein kinases [BR:gaq01001]
D RAM11_00060 vWA domain-containing protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RAM11_11075 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D RAM11_05325 pmrB; two-component system sensor histidine kinase PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D RAM11_08300 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_01690 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RAM11_00185 narX; nitrate/nitrite two-component system sensor histidine kinase NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D RAM11_03925 sensor histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D RAM11_10810 dcuS; DcuS/MalK family sensor histidine kinase K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D RAM11_04590 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D RAM11_03425 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:gaq01009]
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D RAM11_02320 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:gaq01002]
D RAM11_00980 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RAM11_05630 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RAM11_00785 type 1 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RAM11_06250 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RAM11_11125 peptidase domain-containing ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D RAM11_05895 NlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC
D RAM11_11340 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RAM11_03300 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RAM11_04405 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RAM11_00935 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RAM11_11760 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D RAM11_04085 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RAM11_04025 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D RAM11_08990 ptrA; pitrilysin K01407 ptrA; protease III [EC:3.4.24.55]
D RAM11_00320 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RAM11_07850 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RAM11_00585 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D RAM11_05580 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RAM11_06420 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D RAM11_04220 M20 aminoacylase family protein K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D RAM11_08380 M20 peptidase aminoacylase family protein K14665 amhX; amidohydrolase [EC:3.5.1.-]
D RAM11_06085 allC; allantoate deiminase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RAM11_11680 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D RAM11_07220 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RAM11_02480 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RAM11_02160 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RAM11_07090 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RAM11_03185 M48 family metalloprotease K07387 K07387; metalloprotease [EC:3.4.24.-]
D RAM11_03195 M48 family metallopeptidase K07387 K07387; metalloprotease [EC:3.4.24.-]
D RAM11_03005 M48 family metalloprotease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D RAM11_11305 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RAM11_03865 Do family serine endopeptidase K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D RAM11_03870 degS; outer membrane-stress sensor serine endopeptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D RAM11_01275 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RAM11_10380 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RAM11_11280 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RAM11_11270 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RAM11_08845 Lon protease family protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D RAM11_08550 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RAM11_06755 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RAM11_10020 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RAM11_10220 prc; carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RAM11_11225 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D RAM11_04440 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D RAM11_10415 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RAM11_09390 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RAM11_06390 yegQ; tRNA 5-hydroxyuridine modification protein YegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D RAM11_07095 U32 family peptidase K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D RAM11_00645 U32 family peptidase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D RAM11_00640 peptidase U32 family protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D RAM11_05075 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein
D RAM11_10255 tldD; metalloprotease TldD K03568 tldD; TldD protein
D RAM11_08420 eco; serine protease inhibitor ecotin K08276 eco; ecotin
D RAM11_05245 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
D RAM11_01115 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D RAM11_01120 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:gaq01003]
D RAM11_01030 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RAM11_05250 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RAM11_11675 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RAM11_09550 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RAM11_04515 mdoH; glucans biosynthesis glucosyltransferase MdoH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:gaq01005]
D RAM11_01805 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RAM11_01810 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RAM11_10825 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RAM11_11290 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RAM11_09185 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RAM11_08955 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RAM11_02830 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RAM11_02550 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RAM11_08745 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RAM11_08945 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RAM11_08275 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RAM11_08290 rfaC; lipopolysaccharide heptosyltransferase RfaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D RAM11_08285 rfaF; ADP-heptose--LPS heptosyltransferase RfaF K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D RAM11_10555 glycosyltransferase family 4 protein K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D RAM11_09250 glycosyltransferase K03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D RAM11_10560 rfaP; lipopolysaccharide core heptose(I) kinase RfaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D RAM11_10790 lipopolysaccharide core heptose(II) kinase RfaY K02850 waaY; heptose II phosphotransferase [EC:2.7.1.-]
D RAM11_08665 cptA; phosphoethanolamine transferase CptA K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D RAM11_09285 glycosyltransferase K12988 wapR; alpha-1,3-rhamnosyltransferase [EC:2.4.1.-]
D RAM11_04130 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D RAM11_02215 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D RAM11_04180 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D RAM11_08280 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:gaq01011]
D RAM11_11765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RAM11_04995 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RAM11_10850 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RAM11_10870 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RAM11_10885 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RAM11_10845 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RAM11_05600 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RAM11_02780 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RAM11_10875 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RAM11_05315 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RAM11_11625 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RAM11_09550 PBP1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RAM11_11675 mrcB; bifunctional glycosyl transferase/transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RAM11_05250 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RAM11_01265 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RAM11_10890 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RAM11_01275 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RAM11_10380 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RAM11_01030 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RAM11_11680 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D RAM11_00545 sltY; murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RAM11_10395 mltA; murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D RAM11_09660 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D RAM11_10760 mltC; membrane-bound lytic murein transglycosylase MltC K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D RAM11_07185 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D RAM11_05605 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RAM11_01245 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RAM11_05610 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:gaq01004]
D RAM11_02720 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RAM11_02715 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_09315 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_09320 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RAM11_06130 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_09980 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RAM11_02735 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_09995 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RAM11_02725 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_09990 3-ketoacyl-ACP reductase FabG2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RAM11_08850 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D RAM11_01800 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RAM11_00325 fabI; enoyl-ACP reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RAM11_10475 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D RAM11_02285 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RAM11_02710 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RAM11_06290 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RAM11_08245 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:gaq01008]
C 01006 Prenyltransferases [BR:gaq01006]
D RAM11_04495 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RAM11_02490 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RAM11_11315 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RAM11_01135 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RAM11_01845 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RAM11_02130 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:gaq01007]
D RAM11_00955 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RAM11_11860 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RAM11_02340 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RAM11_00145 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RAM11_04265 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RAM11_10325 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RAM11_08690 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RAM11_10510 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RAM11_00975 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RAM11_07805 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RAM11_05440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RAM11_00805 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RAM11_11590 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RAM11_04095 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RAM11_00125 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RAM11_02960 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RAM11_02955 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RAM11_10735 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RAM11_03015 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RAM11_07050 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RAM11_10700 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RAM11_07070 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RAM11_07075 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RAM11_02355 amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D RAM11_03200 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RAM11_02510 amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RAM11_05900 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_07665 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RAM11_10770 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RAM11_11905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RAM11_07975 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RAM11_04745 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RAM11_10670 pabB; aminodeoxychorismate synthase component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D RAM11_06445 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RAM11_06110 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:gaq00194]
D RAM11_00735 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RAM11_00730 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RAM11_00725 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RAM11_00720 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RAM11_00715 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RAM11_00710 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RAM11_00705 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RAM11_00700 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:gaq03000]
D RAM11_03520 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RAM11_09045 helix-turn-helix domain-containing protein K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D RAM11_09040 rhaS; HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D RAM11_06855 AraC family transcriptional regulator K05372 ybtA; AraC family transcriptional regulator
D RAM11_00555 robA; MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RAM11_07390 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RAM11_07910 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RAM11_09000 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D RAM11_11195 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RAM11_02925 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RAM11_06105 allS; HTH-type transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D RAM11_07695 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D RAM11_07285 dsdC; DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D RAM11_09115 dsdC; DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D RAM11_01995 deoR; DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D RAM11_00235 agaR; transcriptional repressor AgaR K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D RAM11_05110 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D RAM11_02065 DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RAM11_04880 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RAM11_10095 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RAM11_04675 LacI family DNA-binding transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D RAM11_03455 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D RAM11_03690 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RAM11_01495 treR; trehalose operon repressor TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D RAM11_00825 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D RAM11_08645 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D RAM11_08765 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RAM11_03830 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D RAM11_08795 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D RAM11_03650 exuR; transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D RAM11_10645 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D RAM11_01945 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D RAM11_11190 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D RAM11_07650 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RAM11_10465 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RAM11_03710 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RAM11_01170 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D RAM11_11320 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RAM11_07105 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RAM11_02040 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D RAM11_00540 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RAM11_02135 SIS domain-containing protein K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D RAM11_05005 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RAM11_04885 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RAM11_00550 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D RAM11_10235 helix-turn-helix transcriptional regulator K07724 ner; Ner family transcriptional regulator
D RAM11_05870 helix-turn-helix domain-containing protein K07724 ner; Ner family transcriptional regulator
D RAM11_04150 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D RAM11_09755 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D RAM11_06375 sugar diacid recognition domain-containing protein K02647 cdaR; carbohydrate diacid regulator
D RAM11_03310 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D RAM11_09165 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein
D RAM11_03880 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D RAM11_01565 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RAM11_05745 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RAM11_07415 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RAM11_09410 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D RAM11_10310 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D RAM11_01765 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D RAM11_06055 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RAM11_09350 sigma 54-interacting transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D RAM11_03535 helix-turn-helix domain-containing protein K07733 alpA; prophage regulatory protein
D RAM11_05920 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D RAM11_02345 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RAM11_10965 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RAM11_01530 rtcR; RNA repair transcriptional activator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D RAM11_10905 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
D RAM11_03960 GyrI-like domain-containing protein K07471 ygiV; probable transcriptional regulator
C 03021 Transcription machinery [BR:gaq03021]
D RAM11_00365 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RAM11_02630 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RAM11_02635 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RAM11_05090 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RAM11_11010 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RAM11_10040 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RAM11_01055 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D RAM11_10615 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D RAM11_01370 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D RAM11_04655 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RAM11_04140 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RAM11_03255 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RAM11_05345 sspA; stringent starvation protein SspA K03599 sspA; stringent starvation protein A
D RAM11_05350 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D RAM11_10035 RseA family anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
D RAM11_10030 MucB/RseB C-terminal domain-containing protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D RAM11_02345 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RAM11_02175 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RAM11_04930 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D RAM11_11805 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:gaq03019]
D RAM11_02365 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RAM11_10015 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RAM11_04460 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RAM11_02555 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RAM11_11815 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RAM11_06660 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RAM11_10125 DEAD/DEAH family ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RAM11_06165 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RAM11_10135 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RAM11_11805 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RAM11_11750 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RAM11_00895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RAM11_01665 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RAM11_01130 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RAM11_07130 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RAM11_11200 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RAM11_02815 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RAM11_10705 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RAM11_01850 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D RAM11_08730 rraB; ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B
D RAM11_02975 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D RAM11_07115 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:gaq03011]
D RAM11_08970 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RAM11_02020 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RAM11_00460 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RAM11_00370 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RAM11_00405 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RAM11_09370 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RAM11_02055 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RAM11_00420 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RAM11_05340 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RAM11_00495 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RAM11_02060 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RAM11_00380 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RAM11_00425 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RAM11_10140 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RAM11_03355 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RAM11_00445 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RAM11_09380 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RAM11_00470 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RAM11_02595 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RAM11_11020 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RAM11_02615 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RAM11_00475 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RAM11_00490 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RAM11_00485 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RAM11_00430 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RAM11_00415 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RAM11_09385 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RAM11_02620 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RAM11_02610 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RAM11_02625 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RAM11_05335 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RAM11_00440 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RAM11_00395 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RAM11_00455 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RAM11_00360 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RAM11_00410 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RAM11_03340 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RAM11_07065 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RAM11_00180 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RAM11_00465 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RAM11_00480 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RAM11_00435 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RAM11_00175 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RAM11_02870 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RAM11_00450 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RAM11_00400 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RAM11_03875 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RAM11_02705 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RAM11_02865 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RAM11_11055 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RAM11_07060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RAM11_00385 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RAM11_10920 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:gaq03009]
D RAM11_10015 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RAM11_02555 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RAM11_10010 era; GTPase Era K03595 era; GTPase
D RAM11_00165 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D RAM11_02345 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D RAM11_04655 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RAM11_04140 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RAM11_03255 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RAM11_04015 rsuA; 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D RAM11_11215 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RAM11_02305 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RAM11_05205 rsmC; 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RAM11_09545 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RAM11_05935 rsmE; 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RAM11_01240 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RAM11_10900 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RAM11_05970 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RAM11_04020 class I SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D RAM11_04465 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RAM11_02165 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RAM11_09030 rlmF; 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D RAM11_09705 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RAM11_02760 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RAM11_04390 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D RAM11_02835 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D RAM11_01680 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RAM11_03770 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RAM11_07215 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D RAM11_02985 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RAM11_08715 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RAM11_02995 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RAM11_05450 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RAM11_01075 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D RAM11_04145 TrmH family RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D RAM11_05195 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RAM11_03125 rimL; 50S ribosomal protein L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D RAM11_03350 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RAM11_08465 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RAM11_08520 ycaO; 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D RAM11_04895 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RAM11_10210 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D RAM11_04785 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D RAM11_02365 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RAM11_05915 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RAM11_10125 DEAD/DEAH family ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RAM11_08315 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D RAM11_02560 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RAM11_00110 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D RAM11_01125 hflX; ribosome rescue GTPase HflX K03665 hflX; GTPase
D RAM11_01160 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RAM11_05095 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RAM11_04665 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D RAM11_04650 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RAM11_09700 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D RAM11_09710 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D RAM11_02170 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D RAM11_05070 yjgA; ribosome biogenesis factor YjgA K09889 yjgA; ribosome-associated protein
D RAM11_10335 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A
D RAM11_05965 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D RAM11_02700 yceD; 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:gaq03016]
D RAM11_06705 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D RAM11_10085 multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RAM11_01525 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D RAM11_00955 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RAM11_03015 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RAM11_00975 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RAM11_05440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RAM11_10510 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RAM11_11860 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RAM11_08690 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RAM11_00805 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RAM11_11590 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RAM11_10700 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RAM11_04095 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RAM11_07050 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RAM11_10735 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RAM11_10325 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RAM11_07805 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RAM11_00125 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RAM11_07070 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RAM11_07075 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RAM11_00145 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RAM11_04265 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RAM11_02580 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RAM11_09365 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RAM11_03800 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RAM11_02195 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D RAM11_04685 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RAM11_04670 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RAM11_09770 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D RAM11_00535 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RAM11_01160 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RAM11_01135 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RAM11_04210 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RAM11_01235 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RAM11_11050 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RAM11_05530 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D RAM11_08630 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RAM11_04535 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D RAM11_07240 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RAM11_04225 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D RAM11_10570 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D RAM11_02960 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RAM11_02955 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RAM11_02340 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RAM11_02945 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D RAM11_08220 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RAM11_08190 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RAM11_04890 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RAM11_11620 dusC; tRNA dihydrouridine(16) synthase DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D RAM11_01250 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RAM11_07250 cmoA; carboxy-S-adenosyl-L-methionine synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D RAM11_07255 cmoB; tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D RAM11_08250 cmoM; tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D RAM11_08310 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D RAM11_03345 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RAM11_04145 TrmH family RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D RAM11_10330 trmJ; tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D RAM11_11070 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RAM11_07440 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D RAM11_06305 truC; tRNA pseudouridine(65) synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D RAM11_02985 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RAM11_05860 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RAM11_05400 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D RAM11_09560 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RAM11_01155 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D RAM11_01785 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D RAM11_01790 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D RAM11_09790 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RAM11_00525 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D RAM11_05640 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D RAM11_03190 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RAM11_05235 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RAM11_05465 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RAM11_05460 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RAM11_05230 queF; preQ(1) synthase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RAM11_07755 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RAM11_03180 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RAM11_11085 thiI; tRNA uracil 4-sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D RAM11_00610 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RAM11_05565 GNAT family N-acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D RAM11_09210 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RAM11_08530 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RAM11_01150 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RAM11_03215 tcdA; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D RAM11_04460 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RAM11_10135 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:gaq03012]
D RAM11_11370 yciH; stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1
D RAM11_04660 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RAM11_07055 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RAM11_03260 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D RAM11_02015 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RAM11_02045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_03245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_02050 fusA; elongation factor G K02355 fusA; elongation factor G
D RAM11_08755 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RAM11_02005 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RAM11_08750 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RAM11_03810 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RAM11_05420 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RAM11_05405 yeiP; elongation factor P-like protein YeiP K02356 efp; elongation factor P
D RAM11_11065 efp; elongation factor P K02356 efp; elongation factor P
D RAM11_04510 epmA; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D RAM11_11060 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D RAM11_00800 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RAM11_08995 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D RAM11_06765 prfH; peptide chain release factor H K02839 prfH; peptide chain release factor
C 03110 Chaperones and folding catalysts [BR:gaq03110]
D RAM11_05470 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RAM11_11275 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RAM11_10410 hslU; HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D RAM11_00895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RAM11_00515 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D RAM11_00675 molecular chaperone HscC K04045 hscC; molecular chaperone HscC
D RAM11_01665 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RAM11_00890 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RAM11_02095 djlA; co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein
D RAM11_00520 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D RAM11_02190 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D RAM11_01865 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RAM11_02185 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D RAM11_01660 co-chaperone GroES K04078 groES; chaperonin GroES
D RAM11_02160 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RAM11_00700 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RAM11_03405 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RAM11_02125 molecular chaperone K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D RAM11_08735 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D RAM11_00570 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RAM11_09190 ppiB; peptidylprolyl isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D RAM11_11265 SurA N-terminal domain-containing protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RAM11_01795 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RAM11_08205 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D RAM11_00335 slyD; peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D RAM11_11210 surA; peptidylprolyl isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RAM11_11810 trxA; thioredoxin TrxA K03671 TXN; thioredoxin
D RAM11_07225 co-chaperone YbbN K05838 ybbN; putative thioredoxin
D RAM11_09205 GrxA family glutaredoxin K03674 grxA; glutaredoxin 1
D RAM11_03065 grxB; glutaredoxin 2 K03675 grxB; glutaredoxin 2
D RAM11_05525 Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RAM11_01005 DsbA family protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RAM11_02990 dsbB; disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D RAM11_03050 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
C 04131 Membrane trafficking [BR:gaq04131]
D RAM11_05255 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RAM11_06595 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D RAM11_05055 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RAM11_05980 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RAM11_07125 pykF; pyruvate kinase PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:gaq03051]
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:gaq03032]
D RAM11_07175 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RAM11_03520 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RAM11_02940 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RAM11_07080 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RAM11_08965 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RAM11_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RAM11_04690 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RAM11_11015 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_02745 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RAM11_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RAM11_07845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RAM11_05430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RAM11_11395 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RAM11_07170 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RAM11_06180 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RAM11_05200 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D RAM11_01815 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RAM11_04280 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RAM11_05795 hypothetical protein K03645 seqA; negative modulator of initiation of replication
D RAM11_01225 hda; DnaA inactivator Hda K10763 hda; DnaA-homolog protein
D RAM11_02855 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RAM11_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RAM11_02100 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RAM11_02105 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RAM11_07700 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RAM11_08020 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:gaq03036]
D RAM11_03520 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RAM11_10015 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RAM11_02940 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RAM11_07080 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RAM11_08965 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RAM11_00555 robA; MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D RAM11_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RAM11_02850 SIS domain-containing protein K12961 diaA; DnaA initiator-associating protein
D RAM11_02910 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RAM11_04885 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RAM11_01130 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D RAM11_02925 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RAM11_07650 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RAM11_08605 yejK; nucleoid-associated protein YejK K06899 ndpA; nucleoid-associated protein
D RAM11_11140 mukB; chromosome partition protein MukB K03632 mukB; chromosome partition protein MukB
D RAM11_11145 mukE; chromosome partition protein MukE K03804 mukE; chromosome partition protein MukE
D RAM11_11150 mukF; chromosome partition protein MukF K03633 mukF; chromosome partition protein MukF
D RAM11_10835 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RAM11_09785 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D RAM11_01065 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RAM11_10890 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RAM11_10895 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D RAM11_10840 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D RAM11_10865 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D RAM11_01060 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RAM11_10830 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RAM11_04830 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D RAM11_04485 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA
D RAM11_05880 zapB; cell division protein ZapB K09892 zapB; cell division protein ZapB
D RAM11_04915 cell division protein ZapC K18657 zapC; cell division protein ZapC
D RAM11_08540 zapD; cell division protein ZapD K18778 zapD; cell division protein ZapD
D RAM11_01245 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RAM11_04835 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RAM11_01945 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D RAM11_05795 hypothetical protein K03645 seqA; negative modulator of initiation of replication
D RAM11_10275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RAM11_10270 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D RAM11_10265 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D RAM11_01270 mrdB; peptidoglycan glycosyltransferase MrdB K05837 rodA; rod shape determining protein RodA
D RAM11_02100 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RAM11_02105 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RAM11_01235 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RAM11_01240 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RAM11_05160 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RAM11_03055 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RAM11_10515 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RAM11_10775 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:gaq03400]
D RAM11_05715 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RAM11_00830 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RAM11_10345 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RAM11_00155 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RAM11_03730 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RAM11_01940 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RAM11_07390 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RAM11_07910 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RAM11_04200 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RAM11_11670 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RAM11_00685 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RAM11_07260 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RAM11_08600 nfo; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RAM11_07445 nfi; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RAM11_07890 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RAM11_03045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RAM11_04825 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RAM11_00960 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RAM11_06285 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RAM11_09155 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RAM11_06935 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RAM11_05170 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RAM11_02630 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RAM11_02635 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RAM11_00365 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RAM11_05090 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RAM11_07510 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RAM11_05050 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RAM11_01140 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D RAM11_02900 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D RAM11_06975 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RAM11_00680 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RAM11_04500 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RAM11_02745 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RAM11_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RAM11_07845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RAM11_05430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RAM11_11395 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RAM11_07170 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RAM11_06180 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RAM11_05200 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_04280 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RAM11_10105 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RAM11_00745 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RAM11_09745 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RAM11_10690 recA; recombinase RecA K03553 recA; recombination protein RecA
D RAM11_06190 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RAM11_06195 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RAM11_11255 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RAM11_09375 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D RAM11_06230 priC; primosomal replication protein PriC K04067 priC; primosomal replication protein N''
D RAM11_02325 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RAM11_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RAM11_05100 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RAM11_07010 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RAM11_06295 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RAM11_01930 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RAM11_11915 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D RAM11_10180 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1
D RAM11_08000 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RAM11_02855 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RAM11_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RAM11_07700 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RAM11_02940 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RAM11_04885 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RAM11_07080 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RAM11_08965 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RAM11_06165 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RAM11_08660 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RAM11_06750 Y-family DNA polymerase K03502 umuC; DNA polymerase V
D RAM11_06755 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RAM11_08550 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RAM11_10695 regulatory protein RecX K03565 recX; regulatory protein
D RAM11_08185 rep; DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RAM11_09215 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RAM11_03625 nrdA; class 1a ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RAM11_03620 nrdB; class Ia ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:gaq03029]
D RAM11_04660 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RAM11_07055 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RAM11_02015 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RAM11_02045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_03245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_02050 fusA; elongation factor G K02355 fusA; elongation factor G
D RAM11_10010 era; GTPase Era K03595 era; GTPase
D RAM11_00145 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RAM11_05440 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RAM11_11590 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RAM11_08690 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RAM11_08920 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RAM11_11300 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RAM11_00895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RAM11_01865 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RAM11_01665 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RAM11_01660 co-chaperone GroES K04078 groES; chaperonin GroES
D RAM11_00890 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RAM11_00535 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RAM11_00520 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB
D RAM11_05525 Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D RAM11_10515 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RAM11_11040 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:gaq02000]
D RAM11_03165 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_05355 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_06875 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D RAM11_03170 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_05360 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_06880 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D RAM11_09240 msbA; lipid A ABC transporter ATP-binding protein/permease MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RAM11_09245 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RAM11_11125 peptidase domain-containing ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D RAM11_10375 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RAM11_09690 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D RAM11_09685 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D RAM11_01000 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D RAM11_00315 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D RAM11_07205 SbmA/BacA-like family transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D RAM11_10535 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D RAM11_09170 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RAM11_09175 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D RAM11_09180 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RAM11_09160 modF; molybdate ABC transporter ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D RAM11_08685 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D RAM11_08680 thiP; thiamine/thiamine pyrophosphate ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RAM11_08675 thiQ; thiamine ABC transporter ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RAM11_08415 extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D RAM11_08400 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D RAM11_08405 potH; putrescine ABC transporter permease PotH K11075 potH; putrescine transport system permease protein
D RAM11_08410 potG; putrescine ABC transporter ATP-binding subunit PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D RAM11_04870 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_06820 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_07025 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RAM11_04865 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_06830 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_07035 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RAM11_04860 rbsA; ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_06825 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_07030 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RAM11_04045 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RAM11_04050 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RAM11_04055 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RAM11_04040 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D RAM11_04035 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RAM11_08570 lysine/arginine/ornithine ABC transporter substrate-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D RAM11_08560 hisM; histidine ABC transporter permease HisM K10015 hisM; histidine transport system permease protein
D RAM11_08565 hisQ; histidine ABC transporter permease HisQ K10016 hisQ; histidine transport system permease protein
D RAM11_06950 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein
D RAM11_06940 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D RAM11_06945 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D RAM11_06955 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_09725 glutamate/aspartate ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D RAM11_09735 ABC transporter permease subunit K10002 gltK; glutamate/aspartate transport system permease protein
D RAM11_09730 amino acid ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D RAM11_09740 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_03955 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D RAM11_03940 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D RAM11_03945 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_02200 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_04075 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_05500 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_07280 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RAM11_02205 metI; methionine ABC transporter permease MetI K02072 metI; D-methionine transport system permease protein
D RAM11_04060 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RAM11_02210 metN; methionine ABC transporter ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_04065 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_05495 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RAM11_11455 urtA; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D RAM11_11460 urtB; urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein
D RAM11_11465 urtC; urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein
D RAM11_11470 urtD; urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D RAM11_11475 urtE; urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein
D RAM11_02255 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D RAM11_02260 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D RAM11_02250 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D RAM11_02245 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D RAM11_05300 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RAM11_05305 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D RAM11_05310 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D RAM11_07335 ABC transporter permease subunit K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RAM11_02370 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D RAM11_02375 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D RAM11_02380 sapD; putrescine export ABC transporter ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D RAM11_02385 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D RAM11_06655 nikA; nickel ABC transporter substrate-binding protein K15584 nikA; nickel transport system substrate-binding protein
D RAM11_06650 ABC transporter permease subunit K15585 nikB; nickel transport system permease protein
D RAM11_06645 nikC; nickel ABC transporter permease subunit NikC K15586 nikC; nickel transport system permease protein
D RAM11_06640 ABC transporter ATP-binding protein K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D RAM11_06635 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D RAM11_03110 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RAM11_03100 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RAM11_03095 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RAM11_03090 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RAM11_11440 extracellular solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D RAM11_11435 yejB; microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D RAM11_11430 microcin C ABC transporter permease K13895 yejE; microcin C transport system permease protein
D RAM11_11425 yejF; microcin C ABC transporter ATP-binding protein YejF K13896 yejF; microcin C transport system ATP-binding protein
D RAM11_09870 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D RAM11_09865 fhuB; Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D RAM11_09875 ABC transporter ATP-binding protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D RAM11_08060 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D RAM11_08070 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D RAM11_08040 iron chelate uptake ABC transporter family permease subunit K25133 hmuU; heme transport system permease protein
D RAM11_08035 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D RAM11_03435 siderophore ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D RAM11_08455 ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D RAM11_03445 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein
D RAM11_03440 ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D RAM11_03450 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D RAM11_11685 znuA; zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D RAM11_11695 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D RAM11_11690 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RAM11_04710 metal ABC transporter substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D RAM11_04700 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein
D RAM11_04695 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D RAM11_04705 manganese/iron ABC transporter ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D RAM11_00770 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RAM11_07855 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RAM11_07860 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RAM11_10620 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RAM11_07495 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D RAM11_07505 lolC; lipoprotein-releasing ABC transporter permease subunit LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D RAM11_07500 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RAM11_01060 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RAM11_01065 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RAM11_00230 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RAM11_01835 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RAM11_01840 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RAM11_06740 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RAM11_10295 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RAM11_10300 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RAM11_00050 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RAM11_04335 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RAM11_04340 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RAM11_04355 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RAM11_00055 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RAM11_04345 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RAM11_04360 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RAM11_11005 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RAM11_08470 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D RAM11_08610 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RAM11_06630 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RAM11_07785 EmmdR/YeeO family multidrug/toxin efflux MATE transporter K26937 dinF; MATE family, multidrug efflux pump
D RAM11_01960 oligosaccharide MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D RAM11_03680 oligosaccharide MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D RAM11_05015 sugar efflux transporter K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D RAM11_04980 nucleoside permease K11537 xapB; MFS transporter, NHS family, xanthosine permease
D RAM11_09105 nucleoside permease K11537 xapB; MFS transporter, NHS family, xanthosine permease
D RAM11_03075 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RAM11_04195 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RAM11_05030 proP; glycine betaine/L-proline transporter ProP K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RAM11_03820 MFS transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D RAM11_03850 MFS transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D RAM11_02405 MFS transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D RAM11_02890 MFS transporter K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D RAM11_03385 lplT; lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D RAM11_09670 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RAM11_04010 Bcr/CflA family multidrug efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RAM11_10530 sugar transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D RAM11_04120 mdtH; multidrug efflux MFS transporter MdtH K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D RAM11_09830 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RAM11_04215 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein
D RAM11_07465 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D RAM11_05000 MFS transporter K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D RAM11_03150 MFS transporter K05373 ybtX; MFS transporter, putative signal transducer
D RAM11_06025 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D RAM11_02460 ptsI; phosphoenolpyruvate-protein phosphotransferase PtsI K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RAM11_02465 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr
D RAM11_07720 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RAM11_03460 fruB; fused PTS fructose transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D RAM11_02455 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D RAM11_01780 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D RAM11_02150 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D RAM11_01575 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_03980 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_05740 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_07425 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_08650 glucose PTS transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RAM11_01500 treB; PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D RAM11_01600 fructose PTS transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D RAM11_01590 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_03470 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RAM11_01595 fructose PTS transporter subunit IIB K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D RAM11_00855 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_09405 PTS cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D RAM11_00850 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_08800 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_09415 PTS cellobiose transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D RAM11_00845 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_08810 PTS transporter subunit EIIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_09395 celB; PTS cellobiose transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D RAM11_07560 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D RAM11_07550 PTS sugar transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D RAM11_07555 PTS transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component
D RAM11_03375 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D RAM11_00910 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_01750 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_06345 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D RAM11_00925 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_03370 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_06335 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_08785 PTS sugar transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D RAM11_00920 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_03365 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_06330 PTS system mannose/fructose/sorbose family transporter subunit IID K02796 manZ; mannose PTS system EIID component
D RAM11_01725 PTS sugar transporter subunit IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-]
D RAM11_01730 PTS sugar transporter subunit IIC K19508 gfrC; fructoselysine/glucoselysine PTS system EIIC component
D RAM11_01735 PTS system mannose/fructose/sorbose family transporter subunit IID K19509 gfrD; fructoselysine/glucoselysine PTS system EIID component
D RAM11_00260 agaF; PTS galactosamine/N-acetylgalactosamine transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D RAM11_00245 agaV; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D RAM11_00250 agaW; PTS N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D RAM11_00255 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D RAM11_03140 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_05120 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_07955 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D RAM11_03135 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_05115 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_06785 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_07950 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D RAM11_03130 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_06790 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_07945 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D RAM11_09125 amtB; ammonium transporter AmtB K03320 amt; ammonium transporter, Amt family
D RAM11_03285 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RAM11_05345 sspA; stringent starvation protein SspA K03599 sspA; stringent starvation protein A
D RAM11_07405 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RAM11_10755 focA; formate transporter FocA K06212 focA; formate transporter
D RAM11_00205 nirC; nitrite transporter NirC K02598 nirC; nitrite transporter
D RAM11_09085 mscM; miniconductance mechanosensitive channel MscM K22051 mscM; miniconductance mechanosensitive channel
D RAM11_01950 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D RAM11_01385 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D RAM11_01390 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RAM11_10430 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D RAM11_10425 tolR; colicin uptake protein TolR K03560 tolR; biopolymer transport protein TolR
D RAM11_08915 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter
D RAM11_08030 zntB; zinc transporter ZntB K16074 zntB; zinc transporter
D RAM11_07585 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D RAM11_04100 porin K14062 ompN; outer membrane protein N
D RAM11_04105 porin K14062 ompN; outer membrane protein N
D RAM11_10100 carbohydrate porin K10124 bglH; carbohydrate-specific outer membrane porin
D RAM11_11920 ompA; porin OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RAM11_08385 TonB-dependent siderophore receptor K19611 fepA; ferric enterobactin receptor
D RAM11_03160 TonB-dependent siderophore receptor K15721 fyuA; pesticin/yersiniabactin receptor
D RAM11_08450 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RAM11_06805 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RAM11_07210 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RAM11_08065 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RAM11_08075 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D RAM11_11645 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RAM11_09860 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RAM11_06860 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_11300 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RAM11_00115 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D RAM11_05550 bamC; outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC
D RAM11_05445 bamD; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D RAM11_08200 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D RAM11_08230 autotransporter assembly complex family protein K07278 tamA; translocation and assembly module TamA
D RAM11_08235 translocation/assembly module TamB domain-containing protein K09800 tamB; translocation and assembly module TamB
D RAM11_10625 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D RAM11_10630 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D RAM11_11205 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein
D RAM11_05435 lptE; LPS assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D RAM11_09715 corC; CNNM family magnesium/cobalt transport protein CorC K06189 corC; hemolysin (HlyC) family protein
D RAM11_06970 CidA/LrgA family protein K06518 cidA; holin-like protein
D RAM11_01215 MFS transporter K16210 togT; oligogalacturonide transporter
D RAM11_03670 MFS transporter K16210 togT; oligogalacturonide transporter
D RAM11_06590 MFS transporter K16210 togT; oligogalacturonide transporter
D RAM11_05415 amino acid permease K11733 lysP; lysine-specific permease
D RAM11_10390 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D RAM11_07525 mmuP; S-methylmethionine permease K16235 mmuP; S-methylmethionine transporter
D RAM11_07435 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D RAM11_03320 APC family permease K20265 gadC; glutamate:GABA antiporter
D RAM11_11755 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D RAM11_04840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RAM11_08325 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump
D RAM11_08365 SMR family transporter K18924 ykkC; paired small multidrug resistance pump
D RAM11_08360 multidrug efflux SMR transporter K18925 ykkD; paired small multidrug resistance pump
D RAM11_05955 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein
D RAM11_08620 EamA family transporter K03298 TC.DME; drug/metabolite transporter, DME family
D RAM11_02495 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D RAM11_09060 rhaT; L-rhamnose/proton symporter RhaT K02856 rhaT; L-rhamnose-H+ transport protein
D RAM11_10740 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D RAM11_07825 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D RAM11_07290 dsdX; D-serine transporter DsdX K13629 dsdX; D-serine transporter
D RAM11_02300 Na+/H+ antiporter NhaC family protein K07084 yuiF; putative amino acid transporter
D RAM11_06385 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D RAM11_08255 gluconate:H+ symporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D RAM11_11000 pitA; inorganic phosphate transporter PitA K16322 pit; low-affinity inorganic phosphate transporter
D RAM11_04900 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D RAM11_00150 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter
D RAM11_02860 gltP; glutamate/aspartate:proton symporter GltP K11102 gltP; proton glutamate symport protein
D RAM11_09460 sstT; serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D RAM11_07005 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RAM11_02090 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D RAM11_04260 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D RAM11_00815 uracil-xanthine permease family protein K02824 uraA; uracil permease
D RAM11_02080 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RAM11_06625 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D RAM11_02570 dauA; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family
D RAM11_01925 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D RAM11_11625 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RAM11_06685 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D RAM11_03605 AEC family transporter K24180 mleP; malate permease and related proteins
D RAM11_09620 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RAM11_04305 LysE family transporter K05835 rhtC; threonine efflux protein
D RAM11_05820 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D RAM11_05825 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D RAM11_07995 AI-2E family transporter K03548 perM; putative permease
D RAM11_05240 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter K09125 yhhQ; queuosine precursor transporter
D RAM11_03335 MarC family protein K05595 marC; multiple antibiotic resistance protein
D RAM11_08935 MarC family NAAT transporter K05595 marC; multiple antibiotic resistance protein
D RAM11_10865 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D RAM11_01670 manganese efflux pump MntP family protein K23242 mntP; manganese efflux pump family protein
D RAM11_04320 FTR1 family protein K07243 FTR; high-affinity iron transporter
D RAM11_04325 iron transporter K07230 p19; periplasmic iron binding protein
D RAM11_04600 carbon starvation CstA family protein K23676 btsT; pyruvate/proton symporter
D RAM11_11660 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D RAM11_10420 tolA; cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein
D RAM11_11665 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D RAM11_02275 fdxH; formate dehydrogenase subunit beta K08349 fdnH; formate dehydrogenase-N, beta subunit
D RAM11_02110 DMSO/selenate family reductase complex A subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D RAM11_02115 DMSO/selenate family reductase complex B subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D RAM11_02120 DmsC/YnfH family molybdoenzyme membrane anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D RAM11_09825 efflux RND transporter periplasmic adaptor subunit K03543 emrA; membrane fusion protein, multidrug efflux system
D RAM11_11130 HlyD family secretion protein K13408 cvaA; membrane fusion protein
D RAM11_04835 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RAM11_00995 efflux RND transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D RAM11_09760 pnuC; nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D RAM11_08500 FeoA family protein K04758 feoA; ferrous iron transport protein A
D RAM11_08495 feoB; Fe(2+) transporter permease subunit FeoB K04759 feoB; ferrous iron transport protein B
D RAM11_02515 entericidin A/B family lipoprotein K16348 ecnB; entericidin B
D RAM11_11910 MipA/OmpV family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:gaq02044]
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_11130 HlyD family secretion protein K13408 cvaA; membrane fusion protein
D RAM11_11125 peptidase domain-containing ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D RAM11_05630 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RAM11_01675 hypothetical protein K02656 pilF; type IV pilus assembly protein PilF
D RAM11_08885 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RAM11_04565 prepilin-type N-terminal cleavage/methylation domain-containing protein K02679 ppdA; prepilin peptidase dependent protein A
D RAM11_04560 prepilin peptidase-dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D RAM11_04550 prepilin-type N-terminal cleavage/methylation domain-containing protein K02681 ppdC; prepilin peptidase dependent protein C
D RAM11_05615 ppdD; prepilin peptidase-dependent pilin K02682 ppdD; prepilin peptidase dependent protein D
D RAM11_05620 ATPase, T2SS/T4P/T4SS family K02504 hofB; protein transport protein HofB
D RAM11_05625 type II secretion system F family protein K02505 hofC; protein transport protein HofC
D RAM11_09570 secretin N-terminal domain-containing protein K02507 hofQ; protein transport protein HofQ
D RAM11_08895 YggT family protein K02221 yggT; YggT family protein
D RAM11_11260 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D RAM11_08960 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D RAM11_01470 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RAM11_01465 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RAM11_01340 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RAM11_01330 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D RAM11_01325 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RAM11_01300 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RAM11_01295 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RAM11_01290 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RAM11_01285 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RAM11_01280 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RAM11_03050 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RAM11_00060 vWA domain-containing protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1]
D RAM11_03735 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RAM11_03405 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D RAM11_11530 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RAM11_03250 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RAM11_11525 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RAM11_11090 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RAM11_00390 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RAM11_02500 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RAM11_01070 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RAM11_11535 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RAM11_11040 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RAM11_04175 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins
C 02022 Two-component system [BR:gaq02022]
D RAM11_11870 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA
D RAM11_11075 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D RAM11_11080 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D RAM11_05325 pmrB; two-component system sensor histidine kinase PmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D RAM11_05320 pmrA; two-component system response regulator PmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D RAM11_08300 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RAM11_08305 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_01690 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RAM11_01695 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RAM11_00185 narX; nitrate/nitrite two-component system sensor histidine kinase NarX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D RAM11_00190 narL; two-component system response regulator NarL K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D RAM11_03925 sensor histidine kinase K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D RAM11_03930 response regulator K07702 dpiA; two-component system, CitB family, response regulator CitB
D RAM11_10810 dcuS; DcuS/MalK family sensor histidine kinase K11614 yufL; two-component system, CitB family, sensor histidine kinase MalK [EC:2.7.13.3]
D RAM11_10815 response regulator K11615 malR; two-component system, CitB family, response regulator MalR
D RAM11_04590 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D RAM11_04595 btsR; two-component system response regulator BtsR K02477 K02477; two-component system, LytTR family, response regulator
D RAM11_03425 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RAM11_03430 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
C 02035 Bacterial motility proteins [BR:gaq02035]
D RAM11_01330 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D RAM11_01325 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RAM11_01320 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D RAM11_01295 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RAM11_01290 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RAM11_01285 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RAM11_01280 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RAM11_01470 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RAM11_01465 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D RAM11_01335 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RAM11_01305 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D RAM11_01300 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RAM11_01340 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RAM11_01410 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D RAM11_01450 flgA; flagellar basal body P-ring formation chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D RAM11_01415 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D RAM11_01310 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D RAM11_01345 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RAM11_01445 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D RAM11_01440 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RAM11_01435 flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D RAM11_01425 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D RAM11_01420 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D RAM11_01405 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D RAM11_01430 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D RAM11_01395 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RAM11_01400 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D RAM11_01460 flgN; flagellar export chaperone FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D RAM11_01365 flagellin K02406 fliC; flagellin
D RAM11_01360 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D RAM11_01355 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D RAM11_01350 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT
D RAM11_01375 flhD; flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D RAM11_01380 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D RAM11_01370 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D RAM11_01385 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D RAM11_01390 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RAM11_03955 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D RAM11_01455 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D RAM11_08885 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RAM11_05630 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RAM11_01675 hypothetical protein K02656 pilF; type IV pilus assembly protein PilF
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:gaq04812]
D RAM11_10275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RAM11_10830 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RAM11_10835 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
C 04147 Exosome [BR:gaq04147]
D RAM11_05750 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D RAM11_05675 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RAM11_05055 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RAM11_02600 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RAM11_07125 pykF; pyruvate kinase PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RAM11_00570 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RAM11_08320 peroxiredoxin C K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D RAM11_01665 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RAM11_00895 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RAM11_02450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RAM11_05765 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RAM11_02045 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_03245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RAM11_09365 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RAM11_04720 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RAM11_11005 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RAM11_00100 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RAM11_07410 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RAM11_06440 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RAM11_06435 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RAM11_07430 arginine deiminase family protein K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D RAM11_05535 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RAM11_03420 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RAM11_11025 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RAM11_02915 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RAM11_10005 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RAM11_08815 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RAM11_10915 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RAM11_05875 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RAM11_05980 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:gaq02048]
D RAM11_10180 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1
D RAM11_10175 cas3f; type I-F CRISPR-associated helicase Cas3f K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D RAM11_10165 csy1; type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1
D RAM11_10160 csy2; type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2
D RAM11_10155 csy3; type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3
D RAM11_10150 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D RAM11_04280 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RAM11_03520 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RAM11_06270 YhcH/YjgK/YiaL family protein K19334 tabA; biofilm protein TabA
D RAM11_10830 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RAM11_10275 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RAM11_02100 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RAM11_02105 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RAM11_00955 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RAM11_09555 protein YgfX K19168 cptA; toxin CptA
D RAM11_00535 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:gaq01504]
D RAM11_11865 ATP-binding protein K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3]
D RAM11_08300 heavy metal sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RAM11_08305 heavy metal response regulator transcription factor K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RAM11_00790 VanW family protein K18346 vanW; vancomycin resistance protein VanW
D RAM11_03595 mprF; bifunctional lysylphosphatidylglycerol flippase/synthetase MprF K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D RAM11_04835 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RAM11_04840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RAM11_10495 tolC; outer membrane channel protein TolC K12340 tolC; outer membrane protein
D RAM11_04215 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:gaq03100]
D RAM11_06360 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RAM11_02225 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RAM11_11730 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RAM11_01095 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RAM11_07360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RAM11_01900 tRNA-Met K14230 tRNA-Met; tRNA Met
D RAM11_04645 tRNA-Met K14230 tRNA-Met; tRNA Met
D RAM11_03240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RAM11_03575 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RAM11_01180 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D RAM11_09485 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RAM11_05265 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D RAM11_08260 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D RAM11_07300 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D RAM11_10355 NADH:flavin oxidoreductase/NADH oxidase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D RAM11_07875 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RAM11_07865 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RAM11_03935 glutathione S-transferase C-terminal domain-containing protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D RAM11_07980 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RAM11_00595 ftnA; non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D RAM11_11790 nrdG; anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D RAM11_10745 pflA; pyruvate formate lyase 1-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D RAM11_09765 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RAM11_00305 tehB; SAM-dependent methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D RAM11_08055 hutW; heme anaerobic degradation radical SAM methyltransferase ChuW/HutW K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D RAM11_01980 sugar O-acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D RAM11_09720 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RAM11_05925 GNAT family N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D RAM11_06035 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D RAM11_02820 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RAM11_07145 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RAM11_05270 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D RAM11_08265 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D RAM11_10950 1-phosphofructokinase K25602 tagK; D-tagatose-1-phosphate kinase [EC:2.7.1.234]
D RAM11_05380 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RAM11_11880 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D RAM11_09960 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RAM11_10435 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RAM11_00840 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D RAM11_06325 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D RAM11_08725 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RAM11_10110 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RAM11_06985 endonuclease K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D RAM11_00750 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RAM11_04790 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RAM11_08855 thermonuclease family protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D RAM11_04540 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-]
D RAM11_06410 frsA; esterase FrsA K11750 frsA; esterase FrsA [EC:3.1.-.-]
D RAM11_03685 DUF2961 domain-containing protein K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225]
D RAM11_01860 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RAM11_02505 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D RAM11_05365 CYTH domain-containing protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D RAM11_04365 nucleoside triphosphate pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D RAM11_06265 low molecular weight protein arginine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D RAM11_00650 csdA; cysteine desulfurase CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D RAM11_09050 rhaM; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D RAM11_04295 gutQ; arabinose-5-phosphate isomerase GutQ K02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13]
D RAM11_03040 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D RAM11_04430 RnfABCDGE type electron transport complex subunit B K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D RAM11_05010 zinc/cadmium/mercury/lead-transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D RAM11_08010 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D RAM11_01740 SIS domain-containing protein K19504 gfrE; glucoselysine-6-phosphate deglycase
D RAM11_01745 SIS domain-containing protein K19510 gfrF; fructoselysine-6-phosphate deglycase
C 99982 Energy metabolism
D RAM11_09095 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D RAM11_06090 acyl-CoA synthetase FdrA K02381 fdrA; FdrA protein
D RAM11_00530 iscU; Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D RAM11_10460 fldA; flavodoxin FldA K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RAM11_05570 cysZ; sulfate transporter CysZ K06203 cysZ; CysZ protein
D RAM11_08890 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D RAM11_01700 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D RAM11_04800 lipopolysaccharide assembly protein LapA domain-containing protein K08992 lapA; lipopolysaccharide assembly protein A
D RAM11_04795 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D RAM11_05830 heme biosynthesis HemY N-terminal domain-containing protein K02498 hemY; HemY protein
D RAM11_04160 ubiB; ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D RAM11_07000 SCP2 domain-containing protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D RAM11_01025 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D RAM11_02905 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D RAM11_07610 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RAM11_05060 cold-shock protein K03704 cspA; cold shock protein
D RAM11_08860 cold shock domain-containing protein K03704 cspA; cold shock protein
D RAM11_09130 glnK; P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2
D RAM11_04935 Tex family protein K06959 tex; protein Tex
C 99974 Translation
D RAM11_06735 rbbA; ribosome-associated ATPase/putative transporter RbbA K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D RAM11_07120 META domain-containing protein K03668 hslJ; heat shock protein HslJ
D RAM11_11285 tig; trigger factor K03545 tig; trigger factor
D RAM11_02265 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D RAM11_11500 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D RAM11_11505 urease accessory protein UreF K03188 ureF; urease accessory protein
D RAM11_11510 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D RAM11_11480 urease accessory protein UreD K03190 ureD; urease accessory protein
D RAM11_03695 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D RAM11_11700 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D RAM11_09630 OsmC family protein K07397 yhfA; putative redox protein
D RAM11_00560 nfuA; Fe-S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D RAM11_00340 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D RAM11_03545 JAB domain-containing protein K03630 radC; DNA repair protein RadC
D RAM11_04505 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RAM11_10565 DUF2813 domain-containing protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D RAM11_02845 YraN family protein K07460 yraN; putative endonuclease
D RAM11_10785 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D RAM11_01855 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D RAM11_03640 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D RAM11_03525 DUF927 domain-containing protein K06919 K06919; putative DNA primase/helicase
C 99979 Viral proteins
C 99998 Others
D RAM11_06185 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RAM11_07795 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D RAM11_03120 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RAM11_05285 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D RAM11_05755 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D RAM11_00755 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D RAM11_01475 NCS1 family transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D RAM11_07140 DASS family sodium-coupled anion symporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D RAM11_09895 aspT; aspartate-alanine antiporter K07085 K07085; putative transport protein
C 99978 Cell growth
D RAM11_10470 inner membrane-spanning protein YciB K06190 ispZ; intracellular septation protein
D RAM11_02965 envC; murein hydrolase activator EnvC K22719 envC; murein hydrolase activator
C 99993 Cell motility
D RAM11_09360 hypothetical protein K07337 K07337; penicillin-binding protein activator
D RAM11_11820 TfoX/Sxy family DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins
D RAM11_02360 syd; SecY-interacting protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D RAM11_10225 proQ; RNA chaperone ProQ K03607 proQ; ProP effector
D RAM11_10995 uspA; universal stress protein UspA K06149 uspA; universal stress protein A
D RAM11_04370 universal stress protein K11932 uspG; universal stress protein G
D RAM11_04425 EF-Tu/IF-2/RF-3 family GTPase K06207 typA; GTP-binding protein
D RAM11_03205 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D RAM11_01260 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RAM11_10090 TIGR04211 family SH3 domain-containing protein K07184 ygiM; SH3 domain protein
D RAM11_04575 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D RAM11_03645 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D RAM11_07375 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB
D RAM11_06145 MlaA family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RAM11_05805 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB
D RAM11_11295 OmpH family outer membrane protein K06142 hlpA; outer membrane protein
D RAM11_05975 nlpD; murein hydrolase activator NlpD K06194 nlpD; lipoprotein NlpD
D RAM11_10130 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D RAM11_10405 asmA; outer membrane assembly protein AsmA K07289 asmA; AsmA protein
D RAM11_04610 NfeD family protein K07340 ybbJ; inner membrane protein
D RAM11_00225 hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein
D RAM11_01830 efflux RND transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein
D RAM11_06730 efflux RND transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein
C 99994 Others
D RAM11_04520 glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D RAM11_10385 TerC/Alx family metal homeostasis membrane protein K05794 terC; tellurite resistance protein TerC
D RAM11_05175 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D RAM11_08050 hutX; heme utilization cystosolic carrier protein HutX K07227 chuX; heme iron utilization protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RAM11_11345 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D RAM11_10680 pqiB; intermembrane transport protein PqiB K06192 pqiB; paraquat-inducible protein B
D RAM11_09445 ChaB family protein K06197 chaB; cation transport regulator
D RAM11_00835 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor
D RAM11_07970 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D RAM11_02585 virulence factor BrkB family protein K07058 K07058; membrane protein
D RAM11_01655 FxsA family protein K07113 fxsA; UPF0716 protein FxsA
D RAM11_00655 csdE; cysteine desulfurase sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE
D RAM11_05855 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D RAM11_02645 LemA family protein K03744 lemA; LemA protein
D RAM11_00345 SlyX family protein K03745 slyX; SlyX protein
D RAM11_02770 SprT family zinc-dependent metalloprotease K02742 sprT; SprT protein
D RAM11_04285 SPOR domain-containing protein K03112 damX; DamX protein
D RAM11_06960 ElyC/SanA/YdcF family protein K03748 sanA; SanA protein
D RAM11_10685 PqiA/YebS family transporter subunit K03808 pqiA; paraquat-inducible protein A
D RAM11_09540 DUF1145 domain-containing protein K08993 yhhL; putative membrane protein
D RAM11_01920 DUF1440 domain-containing protein K08996 yagU; putative membrane protein
D RAM11_02025 zinc ribbon domain-containing protein YjdM K06193 phnA; protein PhnA
C 99997 Function unknown
D RAM11_02650 TPM domain-containing protein K06872 K06872; uncharacterized protein
D RAM11_11235 Bax inhibitor-1/YccA family protein K06890 K06890; uncharacterized protein
D RAM11_05410 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D RAM11_07340 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D RAM11_03600 HD domain-containing protein K06950 K06950; uncharacterized protein
D RAM11_02535 cation:dicarboxylase symporter family transporter K06956 K06956; uncharacterized protein
D RAM11_11745 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D RAM11_03510 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D RAM11_11230 sulfatase-like hydrolase/transferase K07014 K07014; uncharacterized protein
D RAM11_08840 DUF3413 domain-containing protein K07014 K07014; uncharacterized protein
D RAM11_00900 satP; acetate uptake transporter K07034 K07034; uncharacterized protein
D RAM11_05025 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D RAM11_01510 nucleotidyltransferase domain-containing protein K07074 K07074; uncharacterized protein
D RAM11_01515 nucleotidyltransferase domain-containing protein K07074 K07074; uncharacterized protein
D RAM11_09635 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RAM11_10195 TSUP family transporter K07090 K07090; uncharacterized protein
D RAM11_07245 metallophosphoesterase K07098 K07098; uncharacterized protein
D RAM11_01485 NAD(P)-dependent oxidoreductase K07118 K07118; uncharacterized protein
D RAM11_02840 penicillin-binding protein activator K07121 K07121; uncharacterized protein
D RAM11_10505 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D RAM11_11570 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_00575 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_00580 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_08615 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_09605 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_09615 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D RAM11_10550 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein
D RAM11_04925 YcbX family protein K07140 K07140; MOSC domain-containing protein
D RAM11_11045 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D RAM11_03210 PFL family protein K09157 K09157; uncharacterized protein
D RAM11_00090 ybeD; DUF493 family protein YbeD K09158 K09158; uncharacterized protein
D RAM11_08900 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein
D RAM11_07160 YbaN family protein K09790 K09790; uncharacterized protein
D RAM11_08950 Trm112 family protein K09791 K09791; uncharacterized protein
D RAM11_08005 YdcH family protein K09794 K09794; uncharacterized protein
D RAM11_11385 DUF459 domain-containing protein K09795 K09795; uncharacterized protein
D RAM11_02970 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D RAM11_03705 RnfH family protein K09801 K09801; uncharacterized protein
D RAM11_11365 tmaR; PTS system regulator TmaR K09802 K09802; uncharacterized protein
D RAM11_05680 VirK/YbjX family protein K09824 virK; uncharacterized protein
D RAM11_10675 ABC-type transport auxiliary lipoprotein family protein K09857 K09857; uncharacterized protein
D RAM11_06690 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D RAM11_08535 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D RAM11_02935 DUF416 family protein K09891 K09891; uncharacterized protein
D RAM11_05215 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein
D RAM11_02475 UPF0149 family protein K09895 K09895; uncharacterized protein
D RAM11_01010 YihD family protein K09896 K09896; uncharacterized protein
D RAM11_11705 DUF413 domain-containing protein K09897 K09897; uncharacterized protein
D RAM11_11325 YheU family protein K09898 K09898; uncharacterized protein
D RAM11_06235 yfbV; terminus macrodomain insulation protein YfbV K09899 K09899; uncharacterized protein
D RAM11_08905 YcgL domain-containing protein K09902 K09902; uncharacterized protein
D RAM11_03860 DUF1043 family protein K09908 K09908; uncharacterized protein
D RAM11_07705 matP; macrodomain Ter protein MatP K09911 K09911; uncharacterized protein
D RAM11_05155 DUF484 family protein K09921 K09921; uncharacterized protein
D RAM11_10525 DMT family protein K09922 K09922; uncharacterized protein
D RAM11_06665 YggL family protein K09923 K09923; uncharacterized protein
D RAM11_04730 CbrC family protein K09925 K09925; uncharacterized protein
D RAM11_00940 YdbL family protein K09978 K09978; uncharacterized protein
D RAM11_06000 hypothetical protein K09979 K09979; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024