+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gemmatimonas aurantiaca

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GAU_2692 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GAU_0655 mgh; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GAU_0824 putative adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GAU_0535 nth; putative DNA glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GAU_3162 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GAU_0229 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D GAU_2692 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GAU_3910 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E GAU_1687 putative DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E GAU_1180 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E GAU_0369 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GAU_2970 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GAU_0655 mgh; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GAU_0824 putative adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GAU_0661 mutM; formamidopyrimidine-DNA glycosylase/AP lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GAU_2425 formamidopyrimidine-DNA glycolase family protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GAU_2434 mutM; formamidopyrimidine-DNA glycosylase/AP lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GAU_0535 nth; putative DNA glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GAU_3349 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GAU_2163 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E GAU_3071 putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E GAU_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GAU_0790 ligA; NAD(+)-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E GAU_0828 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E GAU_2175 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E GAU_3623 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E GAU_1953 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E GAU_1598 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E GAU_3841 putative exonuclease K03703 uvrC; excinuclease ABC subunit C E GAU_2435 putative exonuclease K03703 uvrC; excinuclease ABC subunit C E GAU_0740 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAU_1545 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAU_0790 ligA; NAD(+)-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GAU_0855 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GAU_0856 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GAU_1973 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GAU_2148 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GAU_3911 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E GAU_1892 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E GAU_1530 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E GAU_1869 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GAU_1868 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GAU_0737 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GAU_0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GAU_3913 holA; putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GAU_2225 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GAU_1880 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GAU_2562 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GAU_1112 dnaX; DNA polymerase III gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GAU_0790 ligA; NAD(+)-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GAU_0740 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAU_1545 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GAU_1948 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E GAU_1814 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GAU_3176 recB; exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E GAU_3177 recC; exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E GAU_3175 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GAU_1917 recA; RecA protein K03553 recA; recombination protein RecA E GAU_2731 RecA protein homolog K03553 recA; recombination protein RecA E GAU_0633 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GAU_0629 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GAU_0634 ruvC; Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GAU_0925 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GAU_0775 exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GAU_0774 exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GAU_1917 recA; RecA protein K03553 recA; recombination protein RecA E GAU_2731 RecA protein homolog K03553 recA; recombination protein RecA E GAU_1685 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GAU_0815 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E GAU_1443 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GAU_0179 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GAU_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GAU_1490 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E GAU_1114 recR; recombination protein RecR K06187 recR; recombination protein RecR E GAU_1864 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E GAU_0633 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GAU_0629 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GAU_0634 ruvC; Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E GAU_0775 exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GAU_0774 exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GAU_0484 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GAU_0813 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GAU_2509 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GAU_1889 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GAU_1490 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F GAU_1114 recR; recombination protein RecR K06187 recR; recombination protein RecR F GAU_0790 ligA; NAD(+)-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F GAU_1674 DNA-binding protein K05788 ihfB; integration host factor subunit beta E Supressor F GAU_1702 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GAU_0964 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GAU_0828 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F GAU_2175 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F GAU_3623 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F GAU_1953 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GAU_2541 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D GAU_1917 recA; RecA protein K03553 recA; recombination protein RecA D GAU_2731 RecA protein homolog K03553 recA; recombination protein RecA D GAU_1726 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D GAU_1864 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D GAU_2732 hypothetical protein K14161 imuB; protein ImuB D GAU_2733 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D GAU_1948 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D GAU_1814 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D GAU_1916 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D GAU_0536 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D GAU_1256 dinG; putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GAU_3402 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D GAU_3162 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GAU_1749 nrdA; ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GAU_0942 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GAU_1748 nrdB; ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D GAU_2449 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024