+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Granulibacter bethesdensis CGDNIH4

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D GbCGDNIH4_0992 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C GbCGDNIH4_0993 GTP-binding protein era K03595 era; GTPase C GbCGDNIH4_1705 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C GbCGDNIH4_1387 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C GbCGDNIH4_2394 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA C GbCGDNIH4_1003 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C GbCGDNIH4_2041 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D GbCGDNIH4_2195 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D GbCGDNIH4_1148 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D GbCGDNIH4_1754 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D GbCGDNIH4_0460 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D GbCGDNIH4_2189 surface protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D GbCGDNIH4_0010 Methyltransferase gidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D GbCGDNIH4_0437 S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D GbCGDNIH4_2364 Tetrapyrrole (Corrin/Porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D GbCGDNIH4_0222 23S rRNA (cytidine(1920)-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D GbCGDNIH4_0383 23S rRNA Gm2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D GbCGDNIH4_1146 23S rRNA Um2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D GbCGDNIH4_1711 putative cytosolic protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D GbCGDNIH4_2426 Hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D GbCGDNIH4_0446 Radical SAM family enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D GbCGDNIH4_0222 23S rRNA (cytidine(1920)-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D GbCGDNIH4_1318 tRNA (Uracil-5-) -methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D GbCGDNIH4_0100 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D GbCGDNIH4_0459 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D GbCGDNIH4_0582 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D GbCGDNIH4_0849 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C GbCGDNIH4_0387 Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C GbCGDNIH4_1684 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM C GbCGDNIH4_0208 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C GbCGDNIH4_0992 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C GbCGDNIH4_0283 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C GbCGDNIH4_0951 Endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C GbCGDNIH4_0534 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C GbCGDNIH4_0993 GTP-binding protein era K03595 era; GTPase C GbCGDNIH4_2295 GTP-binding protein K03977 engA; GTPase C GbCGDNIH4_1705 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-] C GbCGDNIH4_1124 GTP-binding protein hflX K03665 hflX; GTPase B Other maturation factors C GbCGDNIH4_2200 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C GbCGDNIH4_0989 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C GbCGDNIH4_2391 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C GbCGDNIH4_2395 putative cytosolic protein K09748 rimP; ribosome maturation factor RimP C GbCGDNIH4_1710 iojap protein family K09710 ybeB; ribosome-associated protein C GbCGDNIH4_0116 putative cytosolic protein K07042 ybeY; probable rRNA maturation factor C GbCGDNIH4_0695 Ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor C GbCGDNIH4_2318 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024