+E Ribosome biogenesis KO
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Ribosome Biogenesis - Granulibacter bethesdensis CGDNIH4
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D GbCGDNIH4_0992 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C GbCGDNIH4_0993 GTP-binding protein era K03595 era; GTPase
C GbCGDNIH4_1705 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C GbCGDNIH4_1387 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C GbCGDNIH4_2394 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C GbCGDNIH4_1003 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C GbCGDNIH4_2041 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D GbCGDNIH4_2195 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D GbCGDNIH4_1148 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GbCGDNIH4_1754 16S rRNA m(5)C 967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GbCGDNIH4_0460 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D GbCGDNIH4_2189 surface protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D GbCGDNIH4_0010 Methyltransferase gidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GbCGDNIH4_0437 S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D GbCGDNIH4_2364 Tetrapyrrole (Corrin/Porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GbCGDNIH4_0222 23S rRNA (cytidine(1920)-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D GbCGDNIH4_0383 23S rRNA Gm2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D GbCGDNIH4_1146 23S rRNA Um2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D GbCGDNIH4_1711 putative cytosolic protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D GbCGDNIH4_2426 Hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D GbCGDNIH4_0446 Radical SAM family enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D GbCGDNIH4_0222 23S rRNA (cytidine(1920)-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D GbCGDNIH4_1318 tRNA (Uracil-5-) -methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D GbCGDNIH4_0100 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D GbCGDNIH4_0459 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D GbCGDNIH4_0582 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D GbCGDNIH4_0849 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C GbCGDNIH4_0387 Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C GbCGDNIH4_1684 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
C GbCGDNIH4_0208 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C GbCGDNIH4_0992 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C GbCGDNIH4_0283 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C GbCGDNIH4_0951 Endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C GbCGDNIH4_0534 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C GbCGDNIH4_0993 GTP-binding protein era K03595 era; GTPase
C GbCGDNIH4_2295 GTP-binding protein K03977 engA; GTPase
C GbCGDNIH4_1705 GTP-binding protein CgtA (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-]
C GbCGDNIH4_1124 GTP-binding protein hflX K03665 hflX; GTPase
B Other maturation factors
C GbCGDNIH4_2200 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C GbCGDNIH4_0989 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C GbCGDNIH4_2391 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C GbCGDNIH4_2395 putative cytosolic protein K09748 rimP; ribosome maturation factor RimP
C GbCGDNIH4_1710 iojap protein family K09710 ybeB; ribosome-associated protein
C GbCGDNIH4_0116 putative cytosolic protein K07042 ybeY; probable rRNA maturation factor
C GbCGDNIH4_0695 Ribosome-associated factor Y K05808 hpf; ribosome hibernation promoting factor
C GbCGDNIH4_2318 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024