+E Ribosome biogenesis KO
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Ribosome Biogenesis - Geobacter benzoatilyticus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D JZM60_15735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C JZM60_15725 era; GTPase Era K03595 era; GTPase
C JZM60_03880 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C JZM60_03915 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C JZM60_04405 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C JZM60_16615 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C JZM60_13785 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C JZM60_13295 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C JZM60_08700 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D JZM60_11810 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D JZM60_05790 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D JZM60_06580 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D JZM60_05435 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D JZM60_07700 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D JZM60_02180 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D JZM60_11420 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D JZM60_12035 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D JZM60_03905 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D JZM60_07660 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D JZM60_10070 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D JZM60_11420 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D JZM60_13050 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D JZM60_14010 TRAM domain-containing protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D JZM60_11390 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D JZM60_02065 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D JZM60_02840 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D JZM60_06170 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C JZM60_14050 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C JZM60_02220 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C JZM60_03920 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C JZM60_06585 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C JZM60_15735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C JZM60_00995 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C JZM60_03860 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
B rRNA helicases
B GTPases
C JZM60_15725 era; GTPase Era K03595 era; GTPase
C JZM60_01675 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C JZM60_15720 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
C JZM60_03880 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C JZM60_01380 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C JZM60_01045 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C JZM60_15775 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C JZM60_13770 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C JZM60_13790 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C JZM60_06685 yaaA; S4 domain-containing protein YaaA K14761 rlbA; ribosome-associated protein
C JZM60_03900 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
C JZM60_15980 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C JZM60_14705 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C JZM60_11710 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
C JZM60_02095 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C JZM60_13725 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024