+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Gymnogyps californianus (California condor)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 127015687 nucleolar protein 56 isoform X1 K14564 NOP56; nucleolar protein 56
D 127018251 nucleolar protein 58 K14565 NOP58; nucleolar protein 58
D 127029403 NHP2-like protein 1 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D 127019450 H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 127015792 H/ACA ribonucleoprotein complex subunit 1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D 127028598 H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D 127015748 H/ACA ribonucleoprotein complex non-core subunit NAF1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D 127021542 protein SHQ1 homolog isoform X1 K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D 127014402 U3 small nucleolar ribonucleoprotein protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D 127020654 U3 small nucleolar ribonucleoprotein protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D 127019495 ribosomal RNA-processing protein 7 homolog A K14545 RRP7; ribosomal RNA-processing protein 7
D 127029236 periodic tryptophan protein 2 homolog K14558 PWP2; periodic tryptophan protein 2
D 127015983 nucleolar protein 14 K14766 NOP14; nucleolar protein 14
D 127015847 LOW QUALITY PROTEIN: something about silencing protein 10 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D 127021034 LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D 127014049 WD repeat-containing protein 43 K14546 UTP5; U3 small nucleolar RNA-associated protein 5
D 127023926 U3 small nucleolar RNA-associated protein 6 homolog isoform X1 K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D 127015279 HEAT repeat-containing protein 1 isoform X1 K14550 UTP10; U3 small nucleolar RNA-associated protein 10
D 127025183 probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D 127029328 WD repeat-containing protein 3 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D 127022327 transducin beta-like protein 3 isoform X1 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 127019814 U3 small nucleolar RNA-associated protein 14 homolog A K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D 127027328 U3 small nucleolar RNA-associated protein 15 homolog isoform X1 K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D 127018625 WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 127024084 U3 small nucleolar RNA-associated protein 18 homolog K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D 127022819 nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 127018678 small subunit processome component 20 homolog K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D 127027513 WD repeat-containing protein 36 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D 127027805 nucleolar protein 6 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D 127012921 rRNA-processing protein UTP23 homolog K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D 127016965 rRNA-processing protein FCF1 homolog K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D 127014363 U3 small nucleolar RNA-associated protein 25 homolog isoform X1 K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D 127022334 ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D 127027773 probable ATP-dependent RNA helicase DDX10 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D 127018553 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 127027935 probable ATP-dependent RNA helicase DDX47 isoform X1 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D 127025482 probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D 127024527 probable ATP-dependent RNA helicase DDX52 isoform X1 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D 127016324 ATP-dependent RNA helicase DHX15 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 127022962 probable ATP-dependent RNA helicase DHX37 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D 127014657 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D 127017923 ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D 127013232 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D 127023776 RNA exonuclease 4 K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D 127020290 lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D 127023310 casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 127028856 casein kinase II subunit alpha-like K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 127021163 casein kinase II subunit alpha' isoform X1 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
C Other 90S particles
D 127024532 protein AATF isoform X1 K14782 AATF; protein AATF/BFR2
D 127014202 LOW QUALITY PROTEIN: protein CMSS1 K14784 CMS1; protein CMS1
D 127025628 ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D 127028711 LOW QUALITY PROTEIN: protein KRI1 homolog K14786 KRI1; protein KRI1
D 127017710 KRR1 small subunit processome component homolog isoform X1 K06961 KRR1; ribosomal RNA assembly protein
D 127022957 probable RNA-binding protein 19 isoform X1 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D 127016589 RNA cytidine acetyltransferase isoform X1 K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D 127019994 nucleolin isoform X1 K11294 NCL; nucleolin
D 127014910 nucleolar protein 10 isoform X1 K14788 NOL10; ribosome biogenesis protein ENP2
D 127028596 nucleolar protein 9 K14790 NOP9; nucleolar protein 9
D 127014447 LOW QUALITY PROTEIN: PIN2/TERF1-interacting telomerase inhibitor 1 K11135 PINX1; Pin2-interacting protein X1
D 127013696 periodic tryptophan protein 1 homolog isoform X1 K14791 PWP1; periodic tryptophan protein 1
D 127027338 RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D 127017761 protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5
D 127017991 RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12
D 127014033 ribosomal RNA processing protein 36 homolog K14795 RRP36; ribosomal RNA-processing protein 36
D 127022051 treacle protein K14562 TCOF1; Treacher Collins syndrome protein
D 127012794 DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D 127012744 serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D 127027524 serine/threonine-protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D 127027675 probable dimethyladenosine transferase isoform X1 K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D 127024360 probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D 127018566 rRNA N6-adenosine-methyltransferase METTL5 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D 127026160 bystin K14797 ENP1; essential nuclear protein 1
D 127014407 protein LTV1 homolog K14798 LTV1; protein LTV1
D 127021052 RNA-binding protein NOB1 isoform X1 K11883 NOB1; RNA-binding protein NOB1
D 127014801 RNA-binding protein PNO1 K11884 PNO1; RNA-binding protein PNO1
D 127022911 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 127027387 adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D 127024357 pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1
D 127022288 18S rRNA aminocarboxypropyltransferase K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 127014637 LOW QUALITY PROTEIN: programmed cell death protein 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D 127021152 programmed cell death protein 2-like K14801 TSR4; pre-rRNA-processing protein TSR4
D 127022757 active regulator of SIRT1 K26536 RPS19BP1; active regulator of SIRT1
D 127014102 exportin-1 K14290 XPO1; exportin-1
D 127026433 importin subunit beta-1 isoform X1 K14293 KPNB1; importin subunit beta-1
D 127027082 transportin-1 K18752 TNPO1; transportin-1
D 127029094 LOW QUALITY PROTEIN: transportin-1-like K18752 TNPO1; transportin-1
D 127015844 importin-5 K20222 IPO5; importin-5
D 127016375 importin-7 K20223 IPO7; importin-7
D 127026185 importin-9 isoform X1 K20224 IPO9; importin-9
C Other pre-40S particles
D 127016806 phospholipid-transporting ATPase IB isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 127015561 phospholipid-transporting ATPase IA K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 127020459 eukaryotic translation initiation factor 3 subunit J isoform X1 K03245 EIF3J; translation initiation factor 3 subunit J
D 127015483 ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D 127023900 probable ATP-dependent RNA helicase DDX5 isoform X1 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 127018553 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 127017568 nucleolar RNA helicase 2-like K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 127017582 nucleolar RNA helicase 2-like K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 127017197 ATP-dependent RNA helicase DDX24 K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D 127023362 probable ATP-dependent RNA helicase DDX27 K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D 127023862 probable ATP-dependent RNA helicase DDX31 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D 127023024 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D 127022752 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D 127022846 ATP-dependent RNA helicase DDX55 isoform X1 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D 127027195 exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D 127021465 guanine nucleotide-binding protein-like 3 K14538 NUG1; nuclear GTP-binding protein
D 127024981 nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein
D 127012859 GTP-binding protein 4 isoform X1 K06943 NOG1; nucleolar GTP-binding protein
D 127019967 large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D 127020791 elongation factor-like GTPase 1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D 127025741 oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D 127022505 RNA exonuclease 5 isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 127025430 RNA exonuclease 1 homolog isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 127027228 RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 127019935 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 127014867 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E 127012623 ribonucleases P/MRP protein subunit POP1 isoform X1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E 127020979 ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E 127022691 ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E 127018019 ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E 127020827 ribonuclease P protein subunit p25 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 127012775 ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
E 127013130 ribonuclease P protein subunit p40 isoform X1 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
C Kinases
D 127024664 polynucleotide 5'-hydroxyl-kinase NOL9 K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D 127012872 ATP-binding cassette sub-family F member 2 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 127023311 eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 127025779 heat shock cognate 71 kDa protein isoform X1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 127016731 heat shock-related 70 kDa protein 2 K26598 HSPA2; heat shock 70kDa protein 2
D 127024753 mRNA turnover protein 4 homolog K14815 MRT4; mRNA turnover protein 4
D 127020008 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D 127019667 NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
D 127022911 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 127012816 cytoplasmic 60S subunit biogenesis factor ZNF622 K14816 REI1; pre-60S factor REI1
D 127024489 ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1
D 127015766 ribosome biogenesis protein SPATA5 isoform X1 K14575 AFG2; AAA family ATPase
D 127020730 ribosome biogenesis protein SPATA5L1 K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10]
D 127016921 cyclin-dependent kinase 2-interacting protein K26052 CINP; cyclin-dependent kinase 2-interacting protein
D 127024970 C22H1orf109; ribosome biogenesis protein C1orf109 homolog K26053 C1ORF109; ribosome biogenesis protein C1orf109
D 127014102 exportin-1 K14290 XPO1; exportin-1
D 127026433 importin subunit beta-1 isoform X1 K14293 KPNB1; importin subunit beta-1
D 127027082 transportin-1 K18752 TNPO1; transportin-1
D 127029094 LOW QUALITY PROTEIN: transportin-1-like K18752 TNPO1; transportin-1
D 127015844 importin-5 K20222 IPO5; importin-5
D 127016375 importin-7 K20223 IPO7; importin-7
D 127026185 importin-9 isoform X1 K20224 IPO9; importin-9
D 127014886 dual specificity protein phosphatase 12 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D 127013117 testis-expressed protein 10 K14827 IPI1; pre-rRNA-processing protein IPI1
D 127025463 WD repeat-containing protein 18 K14829 IPI3; pre-rRNA-processing protein IPI3
D 127019511 ribosomal biogenesis protein LAS1L isoform X1 K16912 LAS1; ribosomal biogenesis protein LAS1
C Ribosome quality control proteins
D 127015404 LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D 127021256 transcription factor 25 K24970 TCF25; transcription factor 25
D 127016996 ribosome quality control complex subunit NEMF isoform X1 K24971 NEMF; nuclear export mediator factor NEMF
D 127027123 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D 127023912 nuclear protein localization protein 4 homolog isoform X1 K14015 NPLOC4; nuclear protein localization protein 4
D 127022955 ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1 K14016 UFD1; ubiquitin fusion degradation protein 1
D 127014653 putative peptidyl-tRNA hydrolase PTRHD1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D 127018305 LOW QUALITY PROTEIN: ankyrin repeat and zinc finger domain-containing protein 1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D 127028066 LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1
D 127025137 zinc finger protein 593 K14821 BUD20; bud site selection protein 20
D 127017275 coiled-coil domain-containing protein 86 K14822 CGR1; rRNA-processing protein CGR1
D 127018963 probable rRNA-processing protein EBP2 K14823 EBP2; rRNA-processing protein EBP2
D 127013814 ribosome biogenesis protein BOP1 K14824 ERB1; ribosome biogenesis protein ERB1
D 127019094 transmembrane emp24 domain-containing protein 5 K14825 TMED5; p24 family protein gamma-2
D 127013318 p21-activated protein kinase-interacting protein 1 isoform X1 K14830 MAK11; protein MAK11
D 127025259 protein MAK16 homolog K14831 MAK16; protein MAK16
D 127014836 CCAAT/enhancer-binding protein zeta K14832 MAK21; ribosome biogenesis protein MAK21
D 127014376 midasin K14572 MDN1; midasin
D 127021175 60S ribosome subunit biogenesis protein NIP7 homolog isoform X1 K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D 127024898 nucleolar complex protein 2 homolog K14833 NOC2; nucleolar complex protein 2
D 127017679 nucleolar complex protein 3 homolog K14834 NOC3; nucleolar complex protein 3
D 127014511 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D 127021418 nucleolar protein 8 isoform X1 K14836 NOP8; nucleolar protein 8
D 127014108 RNA-binding protein 34 K14837 NOP12; nucleolar protein 12
D 127018436 LOW QUALITY PROTEIN: MKI67 FHA domain-interacting nucleolar phosphoprotein K14838 NOP15; nucleolar protein 15
D 127027708 ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2
D 127022742 pescadillo homolog isoform X1 K14843 PES1; pescadillo
D 127027379 pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
D 127013696 periodic tryptophan protein 1 homolog isoform X1 K14791 PWP1; periodic tryptophan protein 1
D 127016865 ribosomal oxygenase 1 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D 127014783 ribosomal oxygenase 2 isoform X1 K21760 RIOX2; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66]
D 127014719 nuclear valosin-containing protein-like isoform X1 K14571 RIX7; ribosome biogenesis ATPase
D 127018933 ribosome production factor 1 K14846 RPF1; ribosome production factor 1
D 127014784 ribosome production factor 2 homolog isoform X1 K14847 RPF2; ribosome production factor 2
D 127020402 ribosomal RNA processing protein 1 homolog B isoform X1 K14849 RRP1; ribosomal RNA-processing protein 1
D 127026259 LOW QUALITY PROTEIN: ribosomal RNA-processing protein 8 K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D 127017991 RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12
D 127029655 nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17
D 127012773 ribosome biogenesis regulatory protein homolog K14852 RRS1; regulator of ribosome biosynthesis
D 127024602 notchless protein homolog 1 K14855 RSA4; ribosome assembly protein 4
D 127016037 protein SDA1 homolog isoform X1 K14856 SDA1; protein SDA1
D 127026429 pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D 127028707 LOW QUALITY PROTEIN: uncharacterized protein LOC127028707 K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D 127015761 translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16
D 127015837 LOW QUALITY PROTEIN: nucleolar pre-ribosomal-associated protein 1 K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D 127014993 unhealthy ribosome biogenesis protein 2 homolog K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D 127018287 ribosome biogenesis protein WDR12 isoform X1 K14863 WDR12; ribosome biogenesis protein
D 127029532 FMR1-interacting protein NUFIP1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
D 127024474 zinc finger HIT domain-containing protein 3 K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C 127017812 BRCA2 and CDKN1A-interacting protein K15262 BCP1; protein BCP1
C 127016166 cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein
C 127018902 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C 127024368 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C 127015333 dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C 127024399 rRNA methyltransferase 1, mitochondrial K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C 127018423 S-adenosylmethionine sensor upstream of mTORC1 K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C 127024434 LOW QUALITY PROTEIN: rRNA methyltransferase 3, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 127015536 rRNA N6-adenosine-methyltransferase ZCCHC4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C 127020964 probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C 127024275 ATP-dependent RNA helicase DHX33 isoform X1 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C 127016816 DNA-binding protein SMUBP-2 K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
C 127022523 bifunctional peptidase and arginyl-hydroxylase JMJD5 K10277 KDM8; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-]
C 127019671 PHD finger protein 6 isoform X1 K23310 PHF6; PHD finger protein 6
C 127024447 GTPase Era, mitochondrial K03595 era; GTPase
C 127029467 NOP protein chaperone 1 K26142 NOPCHAP1; NOP protein chaperone 1
C 127017666 mitochondrial ribosome-associated GTPase 1 K19828 MTG1; mitochondrial GTPase 1
C 127023486 mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
C 127016209 nitric oxide-associated protein 1 K19832 NOA1; nitric oxide-associated protein 1
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 127015687 nucleolar protein 56 isoform X1 K14564 NOP56; nucleolar protein 56
D 127023840 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D 127019450 H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 127028598 H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
D 127022555 rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
B rRNA processing factors
C 127013232 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C 127024447 GTPase Era, mitochondrial K03595 era; GTPase
C 127023486 mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C 127024972 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
D 127024635 small nucleolar RNA U3 K14483 SNORD3; small nucleolar RNA SNORD3
D 127024622 small nucleolar RNA U3 K14483 SNORD3; small nucleolar RNA SNORD3
D 127023526 small nucleolar SNORD12/SNORD106 K14907 SNORD12; small nucleolar RNA SNORD12
D 127025409 small nucleolar RNA U13 K26291 SNORD13; small nucleolar RNA SNORD13
D 127025929 small nucleolar RNA SNORD14 K14865 SNORD14; small nucleolar RNA SNORD14
D 127025930 small nucleolar RNA SNORD14 K14865 SNORD14; small nucleolar RNA SNORD14
D 127025928 small nucleolar RNA SNORD14 K14865 SNORD14; small nucleolar RNA SNORD14
D 127029801 small nucleolar RNA SNORD15 K14921 SNORD15; small nucleolar RNA SNORD15
D 127019851 small nucleolar RNA SNORD17 K26292 SNORD17; small nucleolar RNA SNORD17
D 127019852 small nucleolar RNA SNORD17 K26292 SNORD17; small nucleolar RNA SNORD17
D 127020885 small nucleolar RNA SNORD18 K14866 SNORD18; small nucleolar RNA SNORD18
D 127020884 small nucleolar RNA SNORD18 K14866 SNORD18; small nucleolar RNA SNORD18
D 127023872 small nucleolar RNA SNORD24 K14867 SNORD24; small nucleolar RNA SNORD24
D 127029805 small nucleolar RNA SNORD35 K14899 SNORD35; small nucleolar RNA SNORD35
D 127023865 small nucleolar RNA SNORD36 K14874 SNORD36; small nucleolar RNA SNORD36
D 127023871 small nucleolar RNA SNORD36 K14874 SNORD36; small nucleolar RNA SNORD36
D 127019429 small nucleolar RNA SNORD38 K14887 SNORD38; small nucleolar RNA SNORD38
D 127028472 small nucleolar RNA SNORD59 K14880 SNORD59; small nucleolar RNA SNORD59
D 127023874 small nucleolar RNA SNORD62 K14919 SNORD62; small nucleolar RNA SNORD62
D 127024231 small nucleolar RNA SNORD104 K14904 SNORD104; small nucleolar RNA SNORD104
D 127024229 U8 small nucleolar RNA K27110 SNORD118; small nucleolar RNA SNORD118
C SnoRNAs act as guides for 2'-O-ribose methylation
D 127024230 small nucleolar RNA R38 K14869 SNORD1; small nucleolar RNA SNORD1
D 127020393 small nucleolar RNA SNORD2 K14870 SNORD2; small nucleolar RNA SNORD2
D 127024625 small nucleolar RNA Z17 K27197 SNORD4; small nucleolar RNA SNORD4
D 127029824 small nucleolar RNA SNORD5 K27198 SNORD5; small nucleolar RNA SNORD5
D 127029809 small nucleolar RNA Z40 K27199 SNORD6; small nucleolar RNA SNORD6
D 127018746 small nucleolar RNA SNORD11 K14896 SNORD11; small nucleolar RNA SNORD11
D 127018747 small nucleolar RNA SNORD11B K14896 SNORD11; small nucleolar RNA SNORD11
D 127021779 small nucleolar RNA SNORD19 K14934 SNORD19; small nucleolar RNA SNORD19
D 127020396 small nucleolar RNA SNORD20 K27207 SNORD20; small nucleolar RNA SNORD20
D 127025724 small nucleolar RNA SNORD37 K27210 SNORD37; small nucleolar RNA SNORD37
D 127027983 small nucleolar RNA SNORD45 K26302 SNORD45; small nucleolar RNA SNORD45
D 127019433 small nucleolar RNA SNORD45 K26302 SNORD45; small nucleolar RNA SNORD45
D 127019431 small nucleolar RNA SNORD46 K14889 SNORD46; small nucleolar RNA SNORD46
D 127024626 small nucleolar RNA SNORD49 K26304 SNORD49; small nucleolar RNA SNORD49
D 127018750 small nucleolar RNA SNORD51 K14885 SNORD51; small nucleolar RNA SNORD51
D 127015357 small nucleolar RNA SNORD53/SNORD92 K26306 SNORD53_92; small nucleolar RNA SNORD53/92
D 127015358 small nucleolar RNA SNORD53/SNORD92 K26306 SNORD53_92; small nucleolar RNA SNORD53/92
D 127013903 small nucleolar RNA U54 K26307 SNORD54; small nucleolar RNA SNORD54
D 127016332 small nucleolar RNA SNORD56 K26309 SNORD56; small nucleolar RNA SNORD56
D 127027876 small nucleolar RNA SNORD58 K26310 SNORD58; small nucleolar RNA SNORD58
D 127019856 small nucleolar RNA SNORD61 K26311 SNORD61; small nucleolar RNA SNORD61
D 127022196 small nucleolar RNA SNORD63 K27111 SNORD63; small nucleolar RNA SNORD63
D 127024630 small nucleolar RNA SNORD65 K14903 SNORD65; small nucleolar RNA SNORD65
D 127017461 small nucleolar RNA SNORD67 K27212 SNORD67; small nucleolar RNA SNORD67
D 127021353 small nucleolar RNA MBII-202 K27213 SNORD68; small nucleolar RNA SNORD68
D 127018743 small nucleolar RNA SNORD70 K27215 SNORD70; small nucleolar RNA SNORD70
D 127018744 small nucleolar RNA SNORD70 K27215 SNORD70; small nucleolar RNA SNORD70
D 127021358 small nucleolar RNA SNORD71 K27216 SNORD71; small nucleolar RNA SNORD71
D 127027908 small nucleolar RNA SNORD72 K27181 SNORD72; small nucleolar RNA SNORD72
D 127016341 small nucleolar RNA SNORD73 K27208 SNORD73; small nucleolar RNA SNORD73
D 127019442 small nucleolar RNA SNORD75 K26312 SNORD75; small nucleolar RNA SNORD75
D 127019427 small nucleolar RNA SNORD79 K26314 SNORD79; small nucleolar RNA SNORD79
D 127020395 small nucleolar RNA SNORD82 K27133 SNORD82; small nucleolar RNA SNORD82
D 127029823 small nucleolar RNA U83B K27134 SNORD83; small nucleolar RNA SNORD83
D 127013900 small nucleolar RNA SNORD87 K27177 SNORD87 U87; small nucleolar RNA SNORD87
D 127029822 small nucleolar RNA SNORD89 K27178 SNORD89; small nucleolar RNA SNORD89
D 127023869 small nucleolar RNA SNORD90 K26474 SNORD90; small nucleolar RNA SNORD90
D 127024631 small nucleolar RNA SNORD91 family K27113 SNORD91; small nucleolar RNA SNORD91
D 127013901 small nucleolar RNA SNORD93 K27114 SNORD93; small nucleolar RNA SNORD93
D 127016337 small nucleolar RNA SNORD94 K27115 SNORD94; small nucleolar RNA SNORD94
D 127017464 small nucleolar RNA SNORD97 K27118 SNORD97; small nucleolar RNA SNORD97
D 127018106 small nucleolar RNA SNORD98 K27119 SNORD98; small nucleolar RNA SNORD98
D 127025211 small nucleolar RNA SNORD99 K27120 SNORD99; small nucleolar RNA SNORD99
D 127015364 small nucleolar RNA SNORD100 K27121 SNORD100; small nucleolar RNA SNORD100
D 127015352 small nucleolar RNA SNORD101 K27122 SNORD101; small nucleolar RNA SNORD101
D 127029803 small nucleolar RNA SNORD102 K27123 SNORD102; small nucleolar RNA SNORD102
D 127025213 small nucleolar RNA SNORD103/SNORD85 K27124 SNORD103; small nucleolar RNA SNORD103
D 127025215 small nucleolar RNA SNORD103/SNORD85 K27124 SNORD103; small nucleolar RNA SNORD103
D 127021354 small nucleolar RNA SNORD111 K27130 SNORD111; small nucleolar RNA SNORD111
D 127021355 small nucleolar RNA SNORD111 K27130 SNORD111; small nucleolar RNA SNORD111
D 127019850 small nucleolar RNA SNORD83 K27136 SNORD117; small nucleolar RNA SNORD117
D 127019854 small nucleolar RNA SNORD83 K27136 SNORD117; small nucleolar RNA SNORD117
D 127028550 small nucleolar RNA SNORD121A K27137 SNORD121; small nucleolar RNA SNORD121
D 127028551 small nucleolar RNA SNORD121A K27137 SNORD121; small nucleolar RNA SNORD121
D 127013902 small nucleolar RNA SNORD123 K27138 SNORD123; small nucleolar RNA SNORD123
D 127023104 small nucleolar RNA SNORD125 K27140 SNORD125; small nucleolar RNA SNORD125
D 127017463 small nucleolar RNA SNORD127 K27142 SNORD127; small nucleolar RNA SNORD127
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
D 127025212 small nucleolar RNA SNORA73 family K14908 SNORA73; small nucleolar RNA SNORA73
D 127021357 small nucleolar RNA SNORA50 K14928 SNORA50_76; small nucleolar RNA SNORA50/76
D 127023103 small nucleolar RNA SNORA77 K14935 SNORA77; small nucleolar RNA SNORA77
C SnoRNAs act as guides for pseudouridynation
D 127029813 small nucleolar RNA SNORA1 K14918 SNORA1; small nucleolar RNA SNORA1
D 127013892 small nucleolar RNA SNORA62/SNORA6 family K14910 SNORA6_62; small nucleolar RNA SNORA6/62
D 127021777 small nucleolar RNA SNORA7 K26322 SNORA7; small nucleolar RNA SNORA7
D 127029810 small nucleolar RNA SNORA8 K26323 SNORA8; small nucleolar RNA SNORA8
D 127015361 small nucleolar RNA SNORA14 K14916 SNORA14; small nucleolar RNA SNORA14
D 127029815 small nucleolar RNA SNORA18 K26327 SNORA18; small nucleolar RNA SNORA18
D 127018111 small nucleolar RNA SNORA19 K26328 SNORA19; small nucleolar RNA SNORA19
D 127026785 small nucleolar RNA SNORA21 K14909 SNORA21; small nucleolar RNA SNORA21
D 127024629 small nucleolar RNA SNORA22 K26329 SNORA22; small nucleolar RNA SNORA22
D 127017467 small nucleolar RNA SNORA23 K26330 SNORA23; small nucleolar RNA SNORA23
D 127016333 small nucleolar RNA SNORA24 K26331 SNORA24; small nucleolar RNA SNORA24
D 127029812 small nucleolar RNA SNORA25 K26332 SNORA25; small nucleolar RNA SNORA25
D 127029817 small nucleolar RNA SNORA27 K26333 SNORA27; small nucleolar RNA SNORA27
D 127017457 small nucleolar RNA SNORA28 K26334 SNORA28; small nucleolar RNA SNORA28
D 127029807 small nucleolar RNA SNORA31 K26336 SNORA31; small nucleolar RNA SNORA31
D 127029808 small nucleolar RNA SNORA31 K26336 SNORA31; small nucleolar RNA SNORA31
D 127019858 small nucleolar RNA SNORA36 family K26338 SNORA36; small nucleolar RNA SNORA36
D 127029819 small nucleolar RNA SNORA40 K14926 SNORA40; small nucleolar RNA SNORA40
D 127018751 small nucleolar RNA SNORA41 K26339 SNORA41; small nucleolar RNA SNORA41
D 127025204 small nucleolar RNA SNORA44 K26340 SNORA44; small nucleolar RNA SNORA44
D 127021356 small nucleolar RNA SNORA46 K26341 SNORA46; small nucleolar RNA SNORA46
D 127027885 small nucleolar RNA SNORA47 K27149 SNORA47; small nucleolar RNA SNORA47
D 127029047 small nucleolar RNA SNORA47 K27149 SNORA47; small nucleolar RNA SNORA47
D 127025206 small nucleolar RNA SNORA55 K27150 SNORA55; small nucleolar RNA SNORA55
D 127025207 small nucleolar RNA SNORA55 K27150 SNORA55; small nucleolar RNA SNORA55
D 127025208 small nucleolar RNA SNORA55 K27150 SNORA55; small nucleolar RNA SNORA55
D 127027066 small nucleolar RNA SNORA58 K26343 SNORA58; small nucleolar RNA SNORA58
D 127020878 small nucleolar RNA SNORA71 K26344 SNORA60_71; small nucleolar RNA SNORA60/71
D 127020883 small nucleolar RNA SNORA71 K26344 SNORA60_71; small nucleolar RNA SNORA60/71
D 127025205 small nucleolar RNA SNORA61 K26345 SNORA61; small nucleolar RNA SNORA61
D 127027877 small nucleolar RNA SNORA66 K26358 SNORA66; small nucleolar RNA SNORA66
D 127028991 small nucleolar RNA SNORA66 K26358 SNORA66; small nucleolar RNA SNORA66
D 127029806 small nucleolar RNA SNORA68 K26360 SNORA68; small nucleolar RNA SNORA68
D 127019855 small nucleolar RNA SNORA69 K26361 SNORA69; small nucleolar RNA SNORA69
D 127013893 small nucleolar RNA SNORA72 K26362 SNORA72; small nucleolar RNA SNORA72
D 127020389 small nucleolar RNA SNORA75 K26363 SNORA75; small nucleolar RNA SNORA75
D 127021781 small nucleolar RNA SNORA84 K27151 SNORA84; small nucleolar RNA SNORA84
B Other snoRNA
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024