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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Gymnogyps californianus (California condor)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        127015395 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        127021058 DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        127024252 DNA-directed RNA polymerase II subunit RPB11-a isoform X1	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        127020170 DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        127014006 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB9	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        127025496 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127029659 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127013222 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127016416 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        127014205 TFIIA-alpha and beta-like factor	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        127016668 transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        127020830 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        127019078 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        127014870 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127015104 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127016923 TATA box-binding protein-like 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127019473 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        127013871 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        127012663 transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        127021056 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127023421 transcription initiation factor TFIID subunit 4 isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127029940 transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127014819 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127017487 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127019577 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        127026162 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        127019579 transcription initiation factor TFIID subunit 9B	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        127019857 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        127026246 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        127025069 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127029680 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        127024521 TATA-binding protein-associated factor 2N	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        127015839 general transcription factor IIE subunit 1-like isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127029418 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127015756 transcription initiation factor IIE subunit beta isoform X1	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        127027291 general transcription factor IIF subunit 2 isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        127016511 general transcription factor IIH subunit 1 isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        127027373 general transcription factor IIH subunit 2 isoform X1	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        127022768 general transcription factor IIH subunit 3 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        127018292 general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        127014808 general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        127017290 CDK-activating kinase assembly factor MAT1 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        127027411 cyclin-H isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        127016640 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        127019053 mediator of RNA polymerase II transcription subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        127013601 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        127016844 mediator of RNA polymerase II transcription subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        127026165 mediator of RNA polymerase II transcription subunit 20 isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        127023636 mediator of RNA polymerase II transcription subunit 22 isoform X1	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        127016197 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        127013636 mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        127026427 mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        127029523 mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        127022098 mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        127022541 mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        127012880 mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        127026646 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
D      Tail
E        127018340 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        127022688 mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        127025450 mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        127014273 cyclin-dependent kinase 19 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        127025902 cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        127014278 cyclin-C	K15161 CCNC; cyclin-C 
E        127019528 mediator of RNA polymerase II transcription subunit 12 isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        127019895 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        127023100 mediator of RNA polymerase II transcription subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        127024325 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        127014080 mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        127025511 mediator of RNA polymerase II transcription subunit 26 isoform X1	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        127023727 mediator of RNA polymerase II transcription subunit 27 isoform X1	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        127012602 histone acetyltransferase KAT2B	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        127026552 LOW QUALITY PROTEIN: histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        127022557 transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        127014682 transcription initiation protein SPT3 homolog	K11313 SUPT3H; transcription initiation protein SPT3 
E        127024377 transcriptional adapter 2-alpha	K11314 TADA2A; transcriptional adapter 2-alpha 
E        127015517 transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        127019309 transcriptional adapter 1 isoform X1	K11317 TADA1; transcriptional adapter 1 
E        127013871 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        127021056 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127023421 transcription initiation factor TFIID subunit 4 isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127029940 transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127014819 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127017487 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127019577 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        127019579 transcription initiation factor TFIID subunit 9B	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        127019857 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        127025069 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127015080 STAGA complex 65 subunit gamma isoform X1	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        127017195 ataxin-7-like protein 1 isoform X1	K11318 ATXN7; ataxin-7 
E        127021714 ataxin-7 isoform X1	K11318 ATXN7; ataxin-7 
E        127027722 chromodomain-helicase-DNA-binding protein 1 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        127029272 chromodomain-helicase-DNA-binding protein 1-like	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        127012925 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        127022375 ubiquitin carboxyl-terminal hydrolase 22 isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        127020968 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        127027093 probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        127022835 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        127012632 SWI/SNF complex subunit SMARCC1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127028418 LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127013090 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127026396 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127028390 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127026531 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        127020794 actin, cytoplasmic type 5 isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        127022299 actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        127020020 actin-like protein 6A isoform X1	K11340 ACTL6A; actin-like protein 6A 
E        127015339 AT-rich interactive domain-containing protein 1B	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        127025078 AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        127016619 AT-rich interactive domain-containing protein 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        127021656 protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        127022835 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        127025658 activated RNA polymerase II transcriptional coactivator p15-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127027533 activated RNA polymerase II transcriptional coactivator p15	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127028987 activated RNA polymerase II transcriptional coactivator p15-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127017479 cell division cycle and apoptosis regulator protein 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        127013375 transcription elongation factor A protein 1	K03145 TFIIS; transcription elongation factor S-II 
E        127023181 transcription elongation factor A protein 2 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        127025022 transcription elongation factor A protein 3	K03145 TFIIS; transcription elongation factor S-II 
E        127024387 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        127024288 transcription elongation factor SPT6 isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        127025297 transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        127029561 pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        127014469 cleavage and polyadenylation specificity factor subunit 3 isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        127022226 cleavage and polyadenylation specificity factor subunit 4 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        127024177 putative cleavage and polyadenylation specificity factor subunit 4-like protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        127014111 serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127022875 serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127024697 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        127014867 5'-3' exoribonuclease 2 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        127012582 regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127023523 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127025179 LOW QUALITY PROTEIN: splicing factor, proline- and glutamine-rich	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        127013971 LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8	K13191 RBM16; RNA-binding protein 16 
E        127014958 SR-related and CTD-associated factor 4 isoform X1	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        127023538 probable helicase senataxin	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        127028724 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        127018840 parafibromin	K15175 CDC73; parafibromin 
E        127016991 RNA polymerase-associated protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        127020783 RNA polymerase-associated protein LEO1 isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        127016588 LOW QUALITY PROTEIN: RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        127016266 negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        127023628 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        127023116 negative elongation factor C/D isoform X1	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
E        127025627 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        127027357 LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        127015435 AF4/FMR2 family member 1 isoform X1	K15184 AFF1; AF4/FMR2 family member 1 
E        127021801 AF4/FMR2 family member 4	K15185 AFF4; AF4/FMR2 family member 4 
E        127012879 ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        127018218 ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        127025566 protein ENL	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        127027452 protein AF-9 isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        127018285 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
E        127025627 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        127027357 LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        127012669 little elongation complex subunit 1	K26143 ICE1; little elongation complex subunit 1 
E        127020600 little elongation complex subunit 2	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        127028718 bromodomain-containing protein 4 isoform X1	K11722 BRD4; bromodomain-containing protein 4 
E        127018285 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        127026525 protein HEXIM1	K15189 HEXIM1_2; protein HEXIM1/2 
E        127016044 la-related protein 7	K15191 LARP7; La-related protein 7 
E        127018285 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
D      DBIRD complex
E        127018960 DBIRD complex subunit ZNF326	K13204 ZNF326; zinc finger protein 326 
D      Others
E        127024247 general transcription factor II-I isoform X1	K03121 TFII-I; transcription initiation factor TFII-I 
E        127024320 general transcription factor II-I repeat domain-containing protein 1	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        127017504 TATA-binding protein-associated factor 172 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        127019130 protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        127016590 protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        127019546 AF4/FMR2 family member 2 isoform X1	K15194 AFF2; AF4/FMR2 family member 2 
E        127026420 LOW QUALITY PROTEIN: AF4/FMR2 family member 3	K15195 AFF3; AF4/FMR2 family member 3 
E        127012619 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        127018289 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        127029865 CTD small phosphatase-like protein isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        127020051 protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        127012970 cysteine/serine-rich nuclear protein 1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        127018661 cysteine/serine-rich nuclear protein 3 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        127028546 cysteine/serine-rich nuclear protein 2	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        127016830 RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        127019095 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        127022215 RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        127016430 cyclin-K	K23326 CCNK; cyclin K 
E        127014979 GPN-loop GTPase 1 isoform X1	K24104 GPN; GPN-loop GTPase 
E        127022927 GPN-loop GTPase 3 isoform X1	K24104 GPN; GPN-loop GTPase 
E        127025091 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        127021076 probable RNA polymerase II nuclear localization protein SLC7A6OS isoform X1	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        127017629 DNA-directed RNA polymerase III subunit RPC1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        127029386 DNA-directed RNA polymerase III subunit RPC2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        127014640 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        127019657 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        127027009 DNA-directed RNA polymerase III subunit RPC3 isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        127022272 DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        127014617 DNA-directed RNA polymerase III subunit RPC6 isoform X1	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        127027090 DNA-directed RNA polymerase III subunit RPC7 isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        127023595 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        127024535 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        127022340 DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        127025496 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127029659 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127013222 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127016416 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        127029438 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        127014870 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127015104 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127016923 TATA box-binding protein-like 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127016347 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        127025274 transcription factor IIIB 50 kDa subunit isoform X1	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        127027372 LOW QUALITY PROTEIN: transcription factor TFIIIB component B'' homolog	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        127022259 general transcription factor 3C polypeptide 1 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        127018714 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        127023861 general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        127014785 general transcription factor 3C polypeptide 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        127018714 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        127016792 snRNA-activating protein complex subunit 1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        127027853 snRNA-activating protein complex subunit 3 isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        127023844 snRNA-activating protein complex subunit 4	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
E        127020588 snRNA-activating protein complex subunit 5 isoform X1	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        127025829 POU domain, class 2, transcription factor 3	K09364 POU2F; POU domain transcription factor, class 2 
E        127029887 POU domain, class 2, transcription factor 1 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        127023743 POU domain, class 5, transcription factor 3	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        127016382 zinc finger protein 143 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        127026374 zinc finger protein 76 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        127015630 DNA-directed RNA polymerase I subunit RPA1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        127014267 DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        127014640 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        127019657 DNA-directed RNA polymerases I and III subunit RPAC2-like	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        127027718 DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        127013247 DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
D      Pol I, II, III common subunits
E        127025496 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127029659 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127013222 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127016416 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        127014870 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127015104 TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127016923 TATA box-binding protein-like 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127014324 TATA box-binding protein-associated factor RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        127015142 LOW QUALITY PROTEIN: TATA box-binding protein-associated factor RNA polymerase I subunit B	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        127013627 TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        127022279 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        127024387 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
D      NoRC (nucleolar remodeling complex)
E        127015527 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
E        127023639 transcription termination factor 1 isoform X1	K15225 TTF1; transcription termination factor 1 
E        127026468 caveolae-associated protein 1	K19387 CAVIN1; caveolae-associated protein 1 
D      Others
E        127018036 nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        127019078 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        127015839 general transcription factor IIE subunit 1-like isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127029418 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 17, 2025