+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gelria sp. Kuro-4

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D kuro4_21020 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E kuro4_21790 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E kuro4_18420 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E kuro4_13140 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D kuro4_17560 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D kuro4_21020 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E kuro4_23110 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E kuro4_21790 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E kuro4_21150 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E kuro4_18420 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E kuro4_26620 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E kuro4_19830 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E kuro4_21990 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E kuro4_21160 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E kuro4_22250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E kuro4_22290 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E kuro4_22240 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E kuro4_22000 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E kuro4_21160 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E kuro4_21990 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F kuro4_10420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F kuro4_10430 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F kuro4_10780 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F kuro4_07650 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta F kuro4_15130 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F kuro4_02800 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E kuro4_18070 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E kuro4_20420 mutS2; endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E kuro4_18080 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E kuro4_18920 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E kuro4_18910 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E kuro4_11220 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E kuro4_21500 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E kuro4_17410 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E kuro4_05400 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E kuro4_13210 yqeN; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E kuro4_04690 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E kuro4_04820 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E kuro4_21990 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E kuro4_22000 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E kuro4_06360 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E kuro4_09090 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E kuro4_17830 recA; protein RecA K03553 recA; recombination protein RecA E kuro4_20000 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E kuro4_19990 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E kuro4_20010 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E kuro4_15150 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E kuro4_27750 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E kuro4_17830 recA; protein RecA K03553 recA; recombination protein RecA E kuro4_01330 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E kuro4_05390 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E kuro4_19830 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E kuro4_24000 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E kuro4_04800 recR; recombination protein RecR K06187 recR; recombination protein RecR E kuro4_18820 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E kuro4_20000 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E kuro4_19990 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E kuro4_20010 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E kuro4_11070 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E kuro4_11060 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E kuro4_09990 subtype I-B CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E kuro4_10070 cas1-1; CRISPR-associated endonuclease Cas1 1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E kuro4_27750 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E kuro4_16800 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F kuro4_05360 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F kuro4_05370 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F kuro4_16840 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F kuro4_02750 hup; transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F kuro4_19830 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F kuro4_24000 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F kuro4_04800 recR; recombination protein RecR K06187 recR; recombination protein RecR F kuro4_21990 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F kuro4_22250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F kuro4_22290 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D kuro4_13980 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D kuro4_17830 recA; protein RecA K03553 recA; recombination protein RecA D kuro4_15800 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D kuro4_18180 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D kuro4_27820 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D kuro4_01100 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D kuro4_18820 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D kuro4_06360 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D kuro4_17840 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D kuro4_20440 DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X) C DNA helicases C Modulation of nucleotide pools D kuro4_17560 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D kuro4_21540 nrdJ; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D kuro4_17480 phosphoesterase RecJ-like protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024