+F Repair protein KO
#
DNA Repair and Recombination Proteins - Geotalea daltonii
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Geob_1689 aag; 3-methyladenine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Geob_3733 hypothetical protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E Geob_2394 endonuclease III-related DNA glycosidase, HhH-GPD superfamily K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Geob_2572 DNA helicase, DEAD_2 domain-containing K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Geob_3053 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_2829 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_0660 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_1125 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_3779 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Geob_3733 hypothetical protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E Geob_3525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Geob_1689 aag; 3-methyladenine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Geob_1575 mutM-1; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Geob_0290 mutM-2; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Geob_2394 endonuclease III-related DNA glycosidase, HhH-GPD superfamily K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Geob_1397 nfo; endodeoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Geob_1408 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Geob_3812 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Geob_1232 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E Geob_1305 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E Geob_1974 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Geob_0379 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Geob_1408 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Geob_3632 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Geob_3631 rpoC; DNA-directed RNA polymerase, beta-prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Geob_3599 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Geob_2144 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Geob_3711 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Geob_2761 mutS-1; DNA mismatch repair ATPase MutS-1 K03555 mutS; DNA mismatch repair protein MutS
E Geob_1751 mutS-2; endonuclease and ATPase MutS-2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Geob_3108 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Geob_2626 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Geob_2627 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Geob_3293 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Geob_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Geob_2173 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Geob_2151 holB; DNA polymerase III, delta-prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Geob_0378 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Geob_1974 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Geob_0379 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Geob_3793 ssb; single-strand-binding protein K03111 ssb; single-strand DNA-binding protein
E Geob_0709 DNA G:T-mismatch repair endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Geob_1389 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E Geob_1390 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E Geob_1388 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA
E Geob_2324 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Geob_2323 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Geob_1312 priA; primosomal protein N', ATP-dependent helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA
E Geob_3703 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Geob_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E Geob_2607 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Geob_1747 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Geob_0376 recR; recombination protein RecR K06187 recR; recombination protein RecR
E Geob_3460 recN; DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Geob_0389 hypothetical protein K03554 rdgC; recombination associated protein RdgC
E Geob_2324 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Geob_2323 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E Geob_3410 cas1; CRISPR-associated endodeoxyribonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E Geob_0337 DNA-binding Ku protein K10979 ku; DNA end-binding protein Ku
E Geob_0336 ligD; DNA ligase D, ATP-dependent K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Geob_0005 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Geob_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Geob_1558 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Geob_3817 hup-1; histone-like protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Geob_1747 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Geob_0376 recR; recombination protein RecR K06187 recR; recombination protein RecR
F Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Geob_3359 ihfA-1; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F Geob_2365 ihfB-2; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
F Geob_2788 ihfB-1; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F Geob_0406 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Geob_3812 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Geob_1232 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Geob_3171 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA
D Geob_3460 recN; DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Geob_3793 ssb; single-strand-binding protein K03111 ssb; single-strand DNA-binding protein
D Geob_1117 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D Geob_1150 DNA polymerase IV (family X) domain and PHP phosphoesterase domain protein PRK08609 K02347 polX; DNA polymerase (family X)
C DNA helicases
D Geob_0618 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D Geob_3053 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_2829 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_0660 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_1125 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_3779 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Geob_3024 nrdJ; ribonucleoside-5'-diphosphate reductase, adenosylcobamide-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D Geob_2694 phosphoesterase, putative K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024