+F Repair protein KO #

  DNA Repair and Recombination Proteins - Geotalea daltonii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Geob_1689 aag; 3-methyladenine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Geob_3733 hypothetical protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E Geob_2394 endonuclease III-related DNA glycosidase, HhH-GPD superfamily K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Geob_2572 DNA helicase, DEAD_2 domain-containing K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Geob_3053 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_2829 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_0660 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_1125 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_3779 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Geob_1878 ogt; methylated DNA--protein cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Geob_3733 hypothetical protein K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E Geob_3525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Geob_1689 aag; 3-methyladenine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Geob_1575 mutM-1; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Geob_0290 mutM-2; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Geob_2394 endonuclease III-related DNA glycosidase, HhH-GPD superfamily K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Geob_1397 nfo; endodeoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Geob_1408 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Geob_3812 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Geob_1232 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Geob_1305 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Geob_1974 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Geob_0379 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Geob_1408 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Geob_3632 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Geob_3631 rpoC; DNA-directed RNA polymerase, beta-prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Geob_3599 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Geob_2144 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Geob_3711 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Geob_2761 mutS-1; DNA mismatch repair ATPase MutS-1 K03555 mutS; DNA mismatch repair protein MutS E Geob_1751 mutS-2; endonuclease and ATPase MutS-2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Geob_3108 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Geob_2626 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Geob_2627 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Geob_3293 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Geob_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Geob_2173 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Geob_2151 holB; DNA polymerase III, delta-prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Geob_0378 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Geob_1974 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Geob_0379 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Geob_3793 ssb; single-strand-binding protein K03111 ssb; single-strand DNA-binding protein E Geob_0709 DNA G:T-mismatch repair endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Geob_1389 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E Geob_1390 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E Geob_1388 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA E Geob_2324 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Geob_2323 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Geob_1312 priA; primosomal protein N', ATP-dependent helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA E Geob_3703 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Geob_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Geob_2607 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Geob_1747 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Geob_0376 recR; recombination protein RecR K06187 recR; recombination protein RecR E Geob_3460 recN; DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Geob_0389 hypothetical protein K03554 rdgC; recombination associated protein RdgC E Geob_2324 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Geob_2323 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Geob_2325 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Geob_3410 cas1; CRISPR-associated endodeoxyribonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Geob_3181 sbcC; DNA repair exonuclease SbcCD, C subunit, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E Geob_3183 sbcD; DNA repair exonuclease SbcCD, D subunit, putative K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Geob_0337 DNA-binding Ku protein K10979 ku; DNA end-binding protein Ku E Geob_0336 ligD; DNA ligase D, ATP-dependent K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Geob_0005 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Geob_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Geob_1558 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Geob_3817 hup-1; histone-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Geob_3446 recJ; single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Geob_1747 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Geob_0376 recR; recombination protein RecR K06187 recR; recombination protein RecR F Geob_1970 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Geob_3359 ihfA-1; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Geob_2365 ihfB-2; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta F Geob_2788 ihfB-1; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Geob_0406 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Geob_3812 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Geob_1232 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Geob_3171 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D Geob_1115 recA; recombinase A K03553 recA; recombination protein RecA D Geob_3460 recN; DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Geob_3793 ssb; single-strand-binding protein K03111 ssb; single-strand DNA-binding protein D Geob_1117 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Geob_1150 DNA polymerase IV (family X) domain and PHP phosphoesterase domain protein PRK08609 K02347 polX; DNA polymerase (family X) C DNA helicases D Geob_0618 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Geob_3053 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_2829 NUDIX hydrolase, MutT family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_0660 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_1125 NUDIX hydrolase, type 15 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_3779 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Geob_2699 dut; deoxyuridine-5'-triphosphate pyrophosphohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Geob_3024 nrdJ; ribonucleoside-5'-diphosphate reductase, adenosylcobamide-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D Geob_2694 phosphoesterase, putative K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024