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Mitochondrial Biogenesis - Gemmata massiliana
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AMitochondrial DNA transcription, translation, and replication factors
B Mitochondrial DNA-encoded proteins
C Mitochondrial respiratory chain complex I
C Mitochondrial respiratory chain complex III
C Cytochrome c oxidase
C F-type ATPase
B Mitochondrial transcription and translation factors
C Mitochondrial RNA polymerase
C Mitochondrial transcription factors
C Mitochondrial translation factors
D SOIL9_70890 translation initiation factor if-2 : Translation initiation factor IF-2 OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=infB PE=3 SV=1: IF2_N: GTP_EFTU: GTP_EFTU_D2: IF-2 K02519 infB; translation initiation factor IF-2
D SOIL9_69190 translation initiation factor if-3 : Translation initiation factor IF-3 OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=infC PE=3 SV=1: IF3_N: IF3_C K02520 infC; translation initiation factor IF-3
D SOIL9_12250 elongation factor ts : Elongation factor Ts OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=tsf PE=3 SV=1: UBA: EF_TS K02357 tsf; elongation factor Ts
D SOIL9_03630 elongation factor tu : Elongation factor Tu OS=Planctomyces maris DSM 8797 GN=tuf PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: GTP_EFTU_D3 K02358 tuf; elongation factor Tu
D SOIL9_11170 elongation factor tu : Elongation factor Tu OS=Rhodopirellula maiorica SM1 GN=tuf PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: GTP_EFTU_D3 K02358 tuf; elongation factor Tu
D SOIL9_66010 translation elongation factor g : Elongation factor G OS=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) GN=fusA PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_C K02355 fusA; elongation factor G
D SOIL9_11280 translation elongation factor g : Elongation factor G OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=fusA PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_C K02355 fusA; elongation factor G
D SOIL9_29360 elongation factor g : Translation elongation factor-like GTPase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2640 PE=4 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_IV: EFG_C K02355 fusA; elongation factor G
C RNase MRP
C Mitochondrial ribonuclease P
C Other mitochondrial DNA transcription and translation factors
D SOIL9_40100 tyrosyl-trna synthetase : Tyrosine--tRNA ligase OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_2772 PE=4 SV=1: tRNA-synt_1b K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SOIL9_23170 leucyl-trna synthetase : Leucine--tRNA ligase OS=uncultured planctomycete GN=leuS PE=3 SV=1: tRNA-synt_1: tRNA-synt_1_2: tRNA-synt_1: Anticodon_1 K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SOIL9_17020 aspartyl-trna synthetase : Aspartate--tRNA(Asp/Asn) ligase OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=aspS PE=3 SV=1: tRNA_anti-codon: tRNA-synt_2: GAD K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SOIL9_46420 glycyl-trna synthetase : Glycine--tRNA ligase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=glyQS PE=3 SV=1: tRNA-synt_2b: HGTP_anticodon K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D SOIL9_06530 arginyl-trna synthetase : Arginine--tRNA ligase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=argS PE=3 SV=1: Arg_tRNA_synt_N: tRNA-synt_1d: DALR_1 K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SOIL9_66140 glutamyl-trna amidotransferase : Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=gatA PE=3 SV=1: Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D SOIL9_70290 aspartyl glutamyl-trna amidotransferase subunit b : Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Blastopirellula marina DSM 3645 GN=gatB PE=3 SV=1: GatB_N: GatB_Yqey K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D SOIL9_66130 glutamyl-trna amidotransferase subunit c : Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=gatC PE=3 SV=1: Glu-tRNAGln K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
B Mitochondrial DNA replication factors
C Mitochondrial DNA polymerase
C Mitochondrial DNA maintenance factors
D SOIL9_46540 dna rna non-specific endonuclease : DNA/RNA non-specific endonuclease OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=Haur_3644 PE=4 SV=1: Endonuclease_NS K01173 ENDOG; endonuclease G, mitochondrial
D SOIL9_46560 dna rna non-specific endonuclease : DNA/RNA endonuclease G, NUC1 OS=Chamaesiphon minutus PCC 6605 GN=Cha6605_2864 PE=4 SV=1: Endonuclease_NS K01173 ENDOG; endonuclease G, mitochondrial
D SOIL9_85050 protease : Protease OS=Rhodopirellula baltica SWK14 GN=RBSWK_05908 PE=4 SV=1: Trypsin_2: Endonuclease_NS K01173 ENDOG; endonuclease G, mitochondrial
C Other Mitochondrial DNA replication factors
D SOIL9_64920 single-stranded dna-binding protein : Single-stranded DNA-binding protein OS=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) GN=ssb PE=4 SV=1: SSB K03111 ssb; single-strand DNA-binding protein
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AMitochondrial protein import machinery
B Endoplasmic reticulum membrane and cytosol
C ER-mitochondria encounter structure (ERMES) complex
C Other ER-memrane and cytosol factors
B Outer membrane
C Transporter outer membrane (TOM) complex
C TOB/SAM complex
D SOIL9_66880 outer membrane protein assembly protein : Surface antigen (D15) OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_2663 PE=4 SV=1: Surf_Ag_VNR: Surf_Ag_VNR: Surf_Ag_VNR: Surf_Ag_VNR: Surf_Ag_VNR: Bac_surface_Ag K07277 SAM50; outer membrane protein insertion porin family
C Porin
C ERMES complex
C Other outer membrane factor
B Inter membrane space
C Transporter inner membrane (TIM) 9/10 complex
C TIM8/13 complex
C Mitochondrial intermembrane space assembly (MIA) complex
B Inner mambrane
C MICOS complex
C MICOS complex (yeast)
C TIM22 complex
C TIM23 complex
C Mitochondrial calcium uniporter complex
C Other inner membrane factors
B Matrix
C MMC/PAM proteins
D SOIL9_54850 Heat shock protein 70 OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3585 PE=3 SV=1: HSP70: HSP70 K04043 dnaK; molecular chaperone DnaK
D SOIL9_59680 chaperone protein : Chaperone protein DnaK OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=dnaK PE=2 SV=1: HSP70 K04043 dnaK; molecular chaperone DnaK
D SOIL9_25310 molecular chaperone : Chaperone protein HscA OS=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) GN=Terro_4169 PE=3 SV=1: HSP70: Fe-S_assembly K04043 dnaK; molecular chaperone DnaK
D SOIL9_50190 co-chaperone : Protein GrpE OS=Planococcus donghaensis MPA1U2 GN=grpE PE=3 SV=1: GrpE K03687 GRPE; molecular chaperone GrpE
C Other matrix factors
D SOIL9_50210 chaperonin : 60 kDa chaperonin OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SOIL9_50230 chaperonin : 60 kDa chaperonin OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SOIL9_50690 chaperonin : 60 kDa chaperonin OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=groL PE=3 SV=1: Cpn60_TCP1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SOIL9_50220 10 kda chaperonin : 10 kDa chaperonin OS=Rhodopirellula baltica SWK14 GN=groS PE=3 SV=1: Cpn10 K04078 groES; chaperonin GroES
D SOIL9_50680 chaperonin cpn10 : 10 kDa chaperonin OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=groS PE=3 SV=1: Cpn10 K04078 groES; chaperonin GroES
D SOIL9_69520 chaperonin cpn10 : 10 kDa chaperonin OS=planctomycete KSU-1 GN=groS PE=3 SV=1: Cpn10 K04078 groES; chaperonin GroES
D SOIL9_50200 chaperone protein : Chaperone protein DnaJ OS=Xenorhabdus doucetiae GN=dnaJ PE=3 SV=1: DnaJ: DnaJ_CXXCXGXG: CTDII K03686 dnaJ; molecular chaperone DnaJ
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AMitochondrial quality control factors
B Regulator of mitochondrial biogenesis
C Ubiquitas transcription factors
D SOIL9_66010 translation elongation factor g : Elongation factor G OS=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) GN=fusA PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_C K02355 fusA; elongation factor G
D SOIL9_11280 translation elongation factor g : Elongation factor G OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=fusA PE=3 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_C K02355 fusA; elongation factor G
D SOIL9_29360 elongation factor g : Translation elongation factor-like GTPase OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2640 PE=4 SV=1: GTP_EFTU: GTP_EFTU_D2: EFG_II: EFG_IV: EFG_IV: EFG_C K02355 fusA; elongation factor G
C Nuclear respiratory factors
C Coactivators
C Proteins involved in Fe-S cluster biogenesis
D SOIL9_00460 cysteine desulfurase : Cysteine desulfurase family protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0245 PE=4 SV=1: Aminotran_5: Aminotran_5 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SOIL9_25240 cysteine desulfurase : Cysteine desulfurase IscS OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=icsS2 PE=3 SV=1: Aminotran_5 K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SOIL9_54850 Heat shock protein 70 OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3585 PE=3 SV=1: HSP70: HSP70 K04043 dnaK; molecular chaperone DnaK
D SOIL9_59680 chaperone protein : Chaperone protein DnaK OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=dnaK PE=2 SV=1: HSP70 K04043 dnaK; molecular chaperone DnaK
D SOIL9_25310 molecular chaperone : Chaperone protein HscA OS=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) GN=Terro_4169 PE=3 SV=1: HSP70: Fe-S_assembly K04043 dnaK; molecular chaperone DnaK
D SOIL9_25280 fe-s protein assembly co-chaperone : Heat shock protein DnaJ-like protein OS=Koribacter versatilis (strain Ellin345) GN=Acid345_0481 PE=4 SV=1: DnaJ: HSCB_C K04082 hscB; molecular chaperone HscB
C Other regulator of mitochondrial biogenesis
B Mitochondrial respiratory chain complex assembly factors
C Complex-I assembly factors
D SOIL9_69770 acyl-dehydrogenase : Acyl-CoA dehydrogenase domain-containing protein OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3707 PE=3 SV=1: Acyl-CoA_dh_N: Acyl-CoA_dh_M: Acyl-CoA_dh_1 K15980 ACAD9; acyl-CoA dehydrogenase family member 9 [EC:1.3.99.-]
D SOIL9_28740 atp-binding protein : Cobyrinic acid ac-diamide synthase OS=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) GN=Rmar_2325 PE=4 SV=1: AAA_31: ParA K03593 mrp; ATP-binding protein involved in chromosome partitioning
C Complex-II assembly factors
C Complex-III assembly factors
C Complex-IV assembly factors
D SOIL9_53560 protoheme ix farnesyltransferase : Protoheme IX farnesyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=ctaB PE=3 SV=1: UbiA K02257 COX10; heme o synthase [EC:2.5.1.141]
D SOIL9_53570 Cytochrome oxidase assembly OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_2264 PE=4 SV=1: COX15-CtaA: COX15-CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D SOIL9_46890 60 kda inner membrane insertion protein : Membrane protein insertase YidC OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=yidC PE=3 SV=1: YidC_periplas: 60KD_IMP K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SOIL9_53550 Uncharacterized protein OS=Planctomyces maris DSM 8797 GN=PM8797T_04800 PE=4 SV=1: SCO1-SenC K07152 SCO1; protein SCO1
D SOIL9_53630 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3660 PE=4 SV=1 K07152 SCO1; protein SCO1
C Complex-V assembly factors
B Mitochondrial dynamics
C Fission and Fusion factors
D SOIL9_54980 nuclease : Uncharacterized protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5059 PE=4 SV=1: PLDc_2 K16862 PLD6; mitochondrial cardiolipin hydrolase [EC:3.1.4.-]
C Actin cytoskeleton organization
C Mitochondrial movement
C Retention of mitochondria
C Morphogenesis factors
B Mitophagy factors
C Autophagy-related proteins
C Parkin-dependent mechanism factors
C Parkin-independent mechanism factors
D SOIL9_59030 heat shock protein 90 : Chaperone protein HtpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1: HATPase_c_3: HSP90 K04079 HSP90A; molecular chaperone HtpG
C Other mitophagy factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 14, 2024