+D GENES KO #

  KEGG Orthology (KO) - Gulosibacter sediminis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:gsd00010] D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D M3M28_06530 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M28_04765 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D M3M28_04760 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_07560 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_06555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M28_06565 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_08030 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_06560 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M28_03520 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M28_06700 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M28_06025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D M3M28_06180 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_00360 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_06635 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_06100 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D M3M28_09175 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:gsd00020] D M3M28_04985 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D M3M28_02615 bifunctional 2-methylcitrate synthase/citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D M3M28_07085 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D M3M28_09515 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D M3M28_05410 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_09435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D M3M28_09440 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D M3M28_10445 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D M3M28_10450 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D M3M28_10435 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D M3M28_10440 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D M3M28_04730 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D M3M28_10710 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D M3M28_07470 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D M3M28_09175 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D M3M28_06025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D M3M28_06180 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_00360 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:gsd00030] D M3M28_06530 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M28_06535 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D M3M28_06545 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D M3M28_04490 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D M3M28_06755 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D M3M28_06520 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01750 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01755 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_06525 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D M3M28_03360 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D M3M28_03780 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D M3M28_00195 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D M3M28_02345 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_04470 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M28_11560 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D M3M28_11555 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D M3M28_04760 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_07560 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_04765 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:gsd00040] D M3M28_10165 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D M3M28_03730 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M28_06755 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D M3M28_11920 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D M3M28_11910 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D M3M28_01705 aldehyde dehydrogenase family protein K19588 dopDH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00051 Fructose and mannose metabolism [PATH:gsd00051] D M3M28_10085 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D M3M28_10050 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10355 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10425 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D M3M28_11920 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D M3M28_11910 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D M3M28_04765 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D M3M28_09635 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D M3M28_07995 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D M3M28_10905 PfkB family carbohydrate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D M3M28_04760 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_07560 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_06555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M28_03360 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D M3M28_10360 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D M3M28_09640 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:gsd00052] D M3M28_09335 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D M3M28_03730 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00053 Ascorbate and aldarate metabolism [PATH:gsd00053] D M3M28_10165 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D M3M28_01295 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D M3M28_00745 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D M3M28_00750 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_11960 gudD; glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D M3M28_01440 glucarate dehydratase family protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D M3M28_01705 aldehyde dehydrogenase family protein K19588 dopDH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D M3M28_01465 kdgD; 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D M3M28_05315 mandelate racemase/muconate lactonizing enzyme family protein K20023 talrD-galrD; L-talarate/galactarate dehydratase [EC:4.2.1.156 4.2.1.42] C 00500 Starch and sucrose metabolism [PATH:gsd00500] D M3M28_03730 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M28_06425 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D M3M28_02850 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D M3M28_05985 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D M3M28_04930 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D M3M28_00025 phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175] D M3M28_02855 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D M3M28_06420 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D M3M28_02860 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D M3M28_02990 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D M3M28_02985 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D M3M28_02980 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D M3M28_11030 glycoside hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D M3M28_06530 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:gsd00520] D M3M28_11010 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D M3M28_09630 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M28_09655 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D M3M28_04465 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D M3M28_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M28_10960 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M28_01105 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D M3M28_01070 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D M3M28_06100 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_03730 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M28_10165 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D M3M28_00010 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1] D M3M28_09335 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D M3M28_01295 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D M3M28_06530 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M28_10085 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D M3M28_10050 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10355 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10425 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D M3M28_06425 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:gsd00620] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_06025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D M3M28_06180 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_00360 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_10735 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M28_10740 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M28_06700 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M28_10205 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10315 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_00760 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_06635 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D M3M28_11905 alpha-hydroxy-acid oxidizing protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D M3M28_01450 alpha-hydroxy-acid oxidizing protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D M3M28_09670 poxB; ubiquinone-dependent pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D M3M28_03970 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D M3M28_07470 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D M3M28_10710 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D M3M28_04730 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D M3M28_09175 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D M3M28_09520 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_05860 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:gsd00630] D M3M28_09525 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_09520 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D M3M28_04985 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D M3M28_02615 bifunctional 2-methylcitrate synthase/citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D M3M28_07085 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_10205 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10315 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10270 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D M3M28_11625 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D M3M28_09985 catalase K03781 katE; catalase [EC:1.11.1.6] D M3M28_11690 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09350 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_00370 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D M3M28_12270 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D M3M28_11560 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D M3M28_05410 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D M3M28_09380 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:gsd00640] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10735 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M28_10740 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M28_11275 thiamine pyrophosphate-dependent enzyme K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_12145 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_11270 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_12140 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_00355 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D M3M28_11265 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D M3M28_12135 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_00690 acyl-CoA dehydrogenase family protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D M3M28_07615 oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_10205 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10315 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_08850 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_12595 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_01635 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_10270 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D M3M28_09440 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D M3M28_09435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D M3M28_00250 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D M3M28_02605 MmgE/PrpD family protein K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D M3M28_02610 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:gsd00650] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_07180 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_02960 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_12270 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D M3M28_10445 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D M3M28_10450 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D M3M28_10435 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D M3M28_10440 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D M3M28_08850 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_12595 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_01635 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_12615 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_00915 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_01800 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_04035 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_08485 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D M3M28_08070 zinc-dependent alcohol dehydrogenase family protein K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D M3M28_05185 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11565 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11800 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02075 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D M3M28_11620 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D M3M28_05955 acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:gsd00660] D M3M28_05185 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11565 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11800 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02075 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D M3M28_09440 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D M3M28_09435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D M3M28_02385 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D M3M28_02390 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D M3M28_02095 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:gsd00562] D M3M28_11115 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D M3M28_00920 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D M3M28_00910 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D M3M28_00250 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D M3M28_06555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:gsd00190] D M3M28_04635 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D M3M28_10445 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D M3M28_10450 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D M3M28_10435 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D M3M28_10440 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D M3M28_07200 Rieske 2Fe-2S domain-containing protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D M3M28_07195 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8] D M3M28_07205 c-type cytochrome K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8] D M3M28_06515 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D M3M28_07235 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9] D M3M28_07210 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D M3M28_07240 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D M3M28_07245 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D M3M28_06510 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D M3M28_08585 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D M3M28_08580 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D M3M28_05580 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D M3M28_05590 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D M3M28_05585 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D M3M28_05575 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D M3M28_05595 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D M3M28_05560 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D M3M28_05570 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D M3M28_05565 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D M3M28_00775 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D M3M28_09225 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D M3M28_05760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:gsd00710] D M3M28_06560 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M28_06565 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_08030 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_04760 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_07560 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_04765 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D M3M28_06520 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01750 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01755 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_03360 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D M3M28_06555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M28_06755 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D M3M28_06525 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] C 00720 Other carbon fixation pathways [PATH:gsd00720] D M3M28_07470 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D M3M28_04730 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D M3M28_10445 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D M3M28_10450 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D M3M28_10435 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D M3M28_10440 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D M3M28_09435 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D M3M28_09440 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_09515 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D M3M28_07085 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D M3M28_09345 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D M3M28_08900 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M28_04475 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M28_10740 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M28_10735 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:gsd00680] D M3M28_08460 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_09350 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M28_04760 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_07560 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D M3M28_04765 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D M3M28_07820 NAD(P)/FAD-dependent oxidoreductase K18277 tmm; trimethylamine monooxygenase [EC:1.14.13.148] D M3M28_08760 fae; formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D M3M28_10735 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D M3M28_10740 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_03520 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M28_12700 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_00875 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_03660 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D M3M28_06430 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:gsd00910] D M3M28_05275 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D M3M28_10880 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D M3M28_03265 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_03015 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D M3M28_03020 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D M3M28_08640 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:gsd00920] D M3M28_00110 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D M3M28_00105 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D M3M28_00100 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D M3M28_07530 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D M3M28_07035 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D M3M28_05530 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D M3M28_05535 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D M3M28_05440 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D M3M28_05765 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D M3M28_02190 LLM class flavin-dependent oxidoreductase K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:gsd00061] D M3M28_10205 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10315 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_06005 acyl carrier protein K02078 acpP; acyl carrier protein D M3M28_06015 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M28_06010 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D M3M28_06000 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_08705 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_06435 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_09365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_01685 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_04705 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07455 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:gsd00071] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_00690 acyl-CoA dehydrogenase family protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D M3M28_09790 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D M3M28_04705 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07455 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_01785 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:gsd00561] D M3M28_00370 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_09510 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D M3M28_08110 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21] D M3M28_07450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M28_00805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M28_00010 NAD-dependent epimerase/dehydratase family protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1] C 00564 Glycerophospholipid metabolism [PATH:gsd00564] D M3M28_02405 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D M3M28_12415 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D M3M28_07450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M28_00805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M28_06255 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D M3M28_09470 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D M3M28_02765 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D M3M28_08410 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D M3M28_11140 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:gsd00600] D M3M28_11010 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:gsd00592] D M3M28_00690 acyl-CoA dehydrogenase family protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:gsd01040] D M3M28_00690 acyl-CoA dehydrogenase family protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D M3M28_02935 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:gsd00230] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_04470 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D M3M28_00590 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D M3M28_00575 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D M3M28_09420 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D M3M28_00435 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D M3M28_00565 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D M3M28_00560 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M28_00600 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D M3M28_10245 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D M3M28_10240 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D M3M28_12175 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D M3M28_09415 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M28_06070 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D M3M28_08305 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_01340 5'-nucleotidase C-terminal domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_10350 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D M3M28_00765 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D M3M28_09505 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M28_09580 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M28_09105 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D M3M28_05265 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D M3M28_09490 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D M3M28_05415 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7] D M3M28_06790 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D M3M28_04145 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M28_04165 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D M3M28_05895 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D M3M28_06905 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D M3M28_01310 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D M3M28_00145 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D M3M28_10365 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D M3M28_09825 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D M3M28_06965 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D M3M28_11545 aspartate/glutamate racemase family protein K16841 hpxA; allantoin racemase [EC:5.1.99.3] C 00240 Pyrimidine metabolism [PATH:gsd00240] D M3M28_06800 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_09805 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_06805 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M28_06820 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D M3M28_06815 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D M3M28_07310 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D M3M28_00065 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D M3M28_06795 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D M3M28_02755 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D M3M28_09105 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D M3M28_10290 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D M3M28_08085 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D M3M28_08040 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D M3M28_10705 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D M3M28_12015 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D M3M28_08305 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_01340 5'-nucleotidase C-terminal domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_11355 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M28_06825 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M28_10400 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D M3M28_11825 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D M3M28_04145 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M28_04165 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D M3M28_07100 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D M3M28_10395 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D M3M28_10700 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D M3M28_05795 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D M3M28_11535 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D M3M28_08345 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D M3M28_11810 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:gsd00250] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_08835 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D M3M28_05735 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D M3M28_08150 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D M3M28_08145 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M28_00145 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D M3M28_12175 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D M3M28_06820 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D M3M28_08850 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_12595 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_01635 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_12615 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_00915 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_01800 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_04035 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_03015 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D M3M28_03020 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D M3M28_03265 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D M3M28_11630 aldehyde dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_03205 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06800 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_09805 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_06805 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M28_05090 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D M3M28_00560 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M28_09630 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M28_00590 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:gsd00260] D M3M28_10720 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M28_10715 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M28_05510 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D M3M28_05515 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D M3M28_04075 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D M3M28_10010 beta-eliminating lyase-related protein K01620 ltaE; threonine aldolase [EC:4.1.2.48] D M3M28_09350 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M28_00370 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D M3M28_03520 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M28_12700 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_00875 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_03660 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D M3M28_06430 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D M3M28_01565 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_08340 FAD-dependent oxidoreductase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D M3M28_01240 FAD-dependent oxidoreductase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D M3M28_01655 solA; N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D M3M28_04680 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D M3M28_06710 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D M3M28_06715 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D M3M28_10255 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D M3M28_10520 M24 family metallopeptidase K15783 doeA; ectoine hydrolase [EC:3.5.4.44] C 00270 Cysteine and methionine metabolism [PATH:gsd00270] D M3M28_05530 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D M3M28_05535 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D M3M28_05370 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_01375 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_04480 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_06775 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D M3M28_11330 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D M3M28_11325 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D M3M28_10720 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M28_10715 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M28_05510 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D M3M28_05440 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D M3M28_05765 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D M3M28_05445 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D M3M28_02195 PLP-dependent transferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D M3M28_02100 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_07035 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D M3M28_12700 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_00875 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_03660 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:gsd00280] D M3M28_02100 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D M3M28_11275 thiamine pyrophosphate-dependent enzyme K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_12145 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_11270 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_12140 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_00355 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D M3M28_11265 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D M3M28_12135 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_10205 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10315 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D M3M28_10270 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D M3M28_08755 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D M3M28_08795 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D M3M28_10565 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D M3M28_00250 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_08485 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:gsd00290] D M3M28_04680 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D M3M28_02385 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D M3M28_02390 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D M3M28_02095 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D M3M28_05185 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11565 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11800 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02075 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D M3M28_02085 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D M3M28_02070 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D M3M28_02100 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D M3M28_05860 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:gsd00300] D M3M28_05510 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D M3M28_10720 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M28_10715 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M28_08425 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_08865 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_01035 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_05785 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D M3M28_04990 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D M3M28_04890 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D M3M28_04995 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M28_08310 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D M3M28_05505 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_09795 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_10385 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_12315 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D M3M28_07400 Mur ligase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_04130 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_07395 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:gsd00310] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_09790 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_12615 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_00915 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_01800 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_04035 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:gsd00220] D M3M28_08155 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D M3M28_08150 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D M3M28_08145 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M28_05090 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D M3M28_00560 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06800 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_09805 ATP-grasp domain-containing protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D M3M28_06805 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D M3M28_03265 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_01315 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D M3M28_08165 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D M3M28_08160 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D M3M28_08170 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] C 00330 Arginine and proline metabolism [PATH:gsd00330] D M3M28_00890 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D M3M28_01640 arginine/lysine/ornithine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D M3M28_08880 PLP-dependent transferase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D M3M28_10530 aminotransferase class V-fold PLP-dependent enzyme K01585 speA; arginine decarboxylase [EC:4.1.1.19] D M3M28_02940 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_09405 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D M3M28_09095 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D M3M28_05460 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_02875 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_01555 aldehyde dehydrogenase family protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D M3M28_11615 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D M3M28_11340 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D M3M28_11630 aldehyde dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_03205 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_05965 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D M3M28_05970 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_02845 proline racemase family protein K01777 prdF; proline racemase [EC:5.1.1.4] C 00340 Histidine metabolism [PATH:gsd00340] D M3M28_06745 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D M3M28_06750 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D M3M28_06735 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D M3M28_08250 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D M3M28_08260 imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D M3M28_06740 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D M3M28_08265 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_05380 histidinol phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D M3M28_07320 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:gsd00350] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_01565 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D M3M28_09390 tyramine oxidase subunit B K25272 tynB; tyramine oxidase subunit B [EC:1.4.3.-] D M3M28_01650 tyramine oxidase subunit B K25272 tynB; tyramine oxidase subunit B [EC:1.4.3.-] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_12500 flavin reductase K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D M3M28_01585 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D M3M28_01520 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D M3M28_01515 HpcH/HpaI aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D M3M28_02225 aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D M3M28_12615 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_00915 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_01800 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_04035 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_03295 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] C 00360 Phenylalanine metabolism [PATH:gsd00360] D M3M28_01565 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D M3M28_07165 paaF; phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D M3M28_07160 hotdog fold thioesterase K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D M3M28_07155 paaA; 1,2-phenylacetyl-CoA epoxidase subunit A K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D M3M28_07150 paaB; 1,2-phenylacetyl-CoA epoxidase subunit B K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D M3M28_07145 paaC; phenylacetate-CoA oxygenase subunit PaaC K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D M3M28_07140 paaJ; phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D M3M28_07135 paaK; phenylacetate-CoA oxygenase/reductase subunit PaaK K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D M3M28_07175 paaZ; phenylacetic acid degradation bifunctional protein PaaZ K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_07180 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_02960 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_03295 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D M3M28_11540 FAD-binding oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D M3M28_00345 FAD-binding oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D M3M28_05460 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_02875 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_06495 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D M3M28_01785 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] C 00380 Tryptophan metabolism [PATH:gsd00380] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_09790 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_10880 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D M3M28_05460 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_02875 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_09985 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:gsd00400] D M3M28_07445 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D M3M28_06840 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D M3M28_06845 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D M3M28_05390 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D M3M28_06850 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D M3M28_09395 anthranilate synthase component I K13503 trpEG; anthranilate synthase [EC:4.1.3.27] D M3M28_07215 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D M3M28_08250 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D M3M28_06720 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D M3M28_06710 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D M3M28_06715 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D M3M28_00200 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D M3M28_08045 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D M3M28_03170 transporter substrate-binding domain-containing protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D M3M28_11575 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:gsd00410] D M3M28_08850 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_12595 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_01635 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_00235 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55] D M3M28_01565 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_01175 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D M3M28_11535 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D M3M28_08345 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D M3M28_11810 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_00690 acyl-CoA dehydrogenase family protein K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D M3M28_00250 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:gsd00430] D M3M28_00235 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55] D M3M28_10740 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D M3M28_10735 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:gsd00450] D M3M28_05765 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D M3M28_05370 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_01375 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_04480 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D M3M28_08175 SufS family cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D M3M28_07895 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D M3M28_12305 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D M3M28_04305 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:gsd00460] D M3M28_10880 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D M3M28_08835 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D M3M28_09350 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:gsd00470] D M3M28_09620 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M28_12320 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_02410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_05090 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D M3M28_00560 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D M3M28_05255 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D M3M28_07385 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M28_08310 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D M3M28_05505 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_09795 hypothetical protein K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_10385 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D M3M28_09095 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D M3M28_02845 proline racemase family protein K01777 prdF; proline racemase [EC:5.1.1.4] D M3M28_02840 FAD-dependent oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-] D M3M28_02805 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D M3M28_01705 aldehyde dehydrogenase family protein K19588 dopDH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D M3M28_11540 FAD-binding oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D M3M28_00345 FAD-binding oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:gsd00480] D M3M28_10220 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D M3M28_02680 YbdK family carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D M3M28_06190 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D M3M28_03320 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D M3M28_09515 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D M3M28_04490 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D M3M28_06535 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis [PATH:gsd00515] D M3M28_04295 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00514 Other types of O-glycan biosynthesis [PATH:gsd00514] D M3M28_04295 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:gsd00511] D M3M28_11010 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:gsd00542] D M3M28_05550 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:gsd00541] D M3M28_03730 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D M3M28_10165 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D M3M28_01295 NAD-dependent epimerase/dehydratase family protein K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D M3M28_10130 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D M3M28_10190 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D M3M28_10135 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D M3M28_10195 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D M3M28_10085 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D M3M28_10050 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10355 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D M3M28_10425 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D M3M28_04465 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D M3M28_01105 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D M3M28_01070 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 00550 Peptidoglycan biosynthesis [PATH:gsd00550] D M3M28_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M28_10960 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M28_07370 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D M3M28_07385 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M28_07400 Mur ligase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_04130 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_12320 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_02410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_07395 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D M3M28_05870 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D M3M28_06330 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D M3M28_07390 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M28_07375 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D M3M28_07405 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D M3M28_12560 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D M3M28_10505 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis [PATH:gsd00552] D M3M28_06330 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D M3M28_05550 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D M3M28_10235 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:gsd00543] D M3M28_05550 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D M3M28_05530 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:gsd00730] D M3M28_09370 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D M3M28_02865 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M28_07080 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D M3M28_09355 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D M3M28_09360 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D M3M28_02420 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D M3M28_05385 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D M3M28_09485 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D M3M28_09825 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:gsd00740] D M3M28_02555 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D M3M28_02540 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D M3M28_02550 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D M3M28_05720 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D M3M28_12500 flavin reductase K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D M3M28_07530 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D M3M28_09355 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] C 00750 Vitamin B6 metabolism [PATH:gsd00750] D M3M28_00185 PfkB family carbohydrate kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D M3M28_03660 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D M3M28_04075 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D M3M28_06955 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D M3M28_06950 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:gsd00760] D M3M28_05250 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D M3M28_10350 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D M3M28_08305 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_01340 5'-nucleotidase C-terminal domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D M3M28_09045 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D M3M28_05125 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D M3M28_03185 nadE; ammonia-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D M3M28_08405 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D M3M28_10500 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D M3M28_08095 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D M3M28_12615 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_00915 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_01800 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D M3M28_04035 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:gsd00770] D M3M28_05185 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11565 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_11800 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02075 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D M3M28_02080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D M3M28_02085 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D M3M28_02070 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D M3M28_06115 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D M3M28_05700 ketopantoate reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D M3M28_01175 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D M3M28_09645 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D M3M28_06780 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D M3M28_02455 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D M3M28_06610 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D M3M28_09625 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D M3M28_02100 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D M3M28_11535 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D M3M28_08345 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D M3M28_11810 M20 family metallo-hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:gsd00780] D M3M28_06000 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_08705 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_06435 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_09365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_01685 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_10265 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:gsd00785] D M3M28_05875 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D M3M28_05880 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D M3M28_11605 lipoate--protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_06025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D M3M28_06180 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_00360 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D M3M28_05410 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D M3M28_11275 thiamine pyrophosphate-dependent enzyme K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_12145 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D M3M28_11270 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_12140 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D M3M28_00355 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D M3M28_11265 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D M3M28_12135 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] C 00790 Folate biosynthesis [PATH:gsd00790] D M3M28_00980 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D M3M28_09485 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D M3M28_00995 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D M3M28_00990 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D M3M28_09115 Mur ligase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D M3M28_00725 aminotransferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] C 00670 One carbon pool by folate [PATH:gsd00670] D M3M28_09345 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D M3M28_09350 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D M3M28_09420 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D M3M28_09415 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M28_06765 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D M3M28_05795 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D M3M28_09380 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D M3M28_08900 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M28_04475 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D M3M28_03725 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:gsd00860] D M3M28_02145 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D M3M28_12645 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D M3M28_10340 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_12685 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_00880 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_12680 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D M3M28_12670 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D M3M28_12650 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D M3M28_12665 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D M3M28_11645 uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D M3M28_06515 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D M3M28_06510 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:gsd00130] D M3M28_11155 class I SAM-dependent methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D M3M28_11160 chorismate-binding protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D M3M28_11180 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D M3M28_11215 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D M3M28_00330 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D M3M28_11200 AMP-binding protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D M3M28_11205 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D M3M28_11195 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D M3M28_08725 NmrA family NAD(P)-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:gsd00900] D M3M28_07080 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D M3M28_05625 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D M3M28_03550 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D M3M28_04320 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D M3M28_05635 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D M3M28_04750 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_03095 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D M3M28_03090 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M28_07430 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M28_04715 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D M3M28_05870 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:gsd00907] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_12510 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase D M3M28_08485 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D M3M28_06520 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01750 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D M3M28_01755 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:gsd00523] D M3M28_10130 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D M3M28_10190 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D M3M28_10135 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D M3M28_10195 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D M3M28_11160 chorismate-binding protein K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D M3M28_10190 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:gsd00946] D M3M28_01125 family 78 glycoside hydrolase catalytic domain K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:gsd00311] D M3M28_12485 C45 family peptidase K19200 IAL; isopenicillin-N N-acyltransferase like protein D M3M28_00290 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:gsd00332] D M3M28_05965 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D M3M28_05970 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:gsd00261] D M3M28_10720 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D M3M28_10715 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D M3M28_08425 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_08865 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_01035 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D M3M28_05785 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:gsd00521] D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D M3M28_11580 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D M3M28_11115 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D M3M28_00920 iolG; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D M3M28_10130 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D M3M28_10190 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D M3M28_10135 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D M3M28_10195 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D M3M28_08540 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:gsd00525] D M3M28_10130 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D M3M28_10190 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:gsd00401] D M3M28_08045 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D M3M28_06015 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M28_06435 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_09365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_01685 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D M3M28_06005 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D M3M28_06775 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:gsd00362] D M3M28_04825 alpha/beta hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_04400 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D M3M28_08800 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D M3M28_01785 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D M3M28_01780 2Fe-2S iron-sulfur cluster-binding protein K04755 fdx; ferredoxin, 2Fe-2S D M3M28_09790 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_07180 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_02960 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:gsd00627] D M3M28_05460 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_02875 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_10880 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D M3M28_00760 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D M3M28_11635 FAD-binding monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D M3M28_12225 FAD-dependent monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:gsd00625] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_08680 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D M3M28_08460 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D M3M28_01245 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:gsd00361] D M3M28_04400 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D M3M28_01245 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:gsd00623] D M3M28_11635 FAD-binding monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D M3M28_12225 FAD-dependent monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D M3M28_03295 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] C 00622 Xylene degradation [PATH:gsd00622] D M3M28_03295 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D M3M28_04400 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D M3M28_07065 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D M3M28_03875 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:gsd00643] D M3M28_05460 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_02875 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D M3M28_10880 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D M3M28_04400 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:gsd00930] D M3M28_01495 aldehyde dehydrogenase (NADP(+)) K14519 aldH; NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4] D M3M28_03890 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D M3M28_12475 P1 family peptidase K19963 nylC; 6-aminohexanoate-oligomer endohydrolase [EC:3.5.1.117] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:gsd00626] D M3M28_06630 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_02355 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D M3M28_09190 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D M3M28_02235 alcohol dehydrogenase catalytic domain-containing protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:gsd03020] D M3M28_09975 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M28_09970 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M28_09695 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M28_06785 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D M3M28_03635 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:gsd03010] D M3M28_06620 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D M3M28_02745 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D M3M28_09895 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D M3M28_06885 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D M3M28_09845 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D M3M28_12255 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D M3M28_09950 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D M3M28_09860 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D M3M28_09660 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D M3M28_09930 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D M3M28_09700 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D M3M28_09955 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D M3M28_09705 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D M3M28_12080 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D M3M28_05755 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D M3M28_02675 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D M3M28_09880 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D M3M28_12245 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D M3M28_09905 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D M3M28_08445 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D M3M28_10920 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D M3M28_09910 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D M3M28_09925 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D M3M28_09920 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D M3M28_09865 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D M3M28_09855 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D M3M28_10870 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D M3M28_12240 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D M3M28_10875 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D M3M28_10925 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D M3M28_09665 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D M3M28_09875 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D M3M28_09835 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D M3M28_09890 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D M3M28_09690 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D M3M28_09850 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D M3M28_02690 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D M3M28_08220 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D M3M28_09065 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D M3M28_09900 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D M3M28_09915 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D M3M28_04500 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D M3M28_09060 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D M3M28_12090 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D M3M28_09840 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D M3M28_06410 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D M3M28_02465 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D M3M28_12085 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M28_12360 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D M3M28_08225 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D M3M28_09710 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D M3M28_02020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_08135 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_02025 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M28_08130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M28_02030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M28_08125 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:gsd00970] D M3M28_03755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_12405 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_09030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_03145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_05490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_11430 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_03700 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_05915 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M28_00790 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M28_07010 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D M3M28_02215 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M28_04460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M28_02375 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M28_00785 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M28_07015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_11835 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_03375 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_03135 tRNA-His K14226 tRNA-His; tRNA His D M3M28_12400 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M28_04640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_12585 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_06350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_05270 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_06675 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_01975 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M28_09270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M28_05150 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M28_05980 tRNA-Ile K14230 tRNA-Met; tRNA Met D M3M28_11100 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M28_00795 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M28_07980 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_10675 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_03390 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_10850 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_11470 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_01360 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_11480 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_10550 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_11105 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_03575 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_10940 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D M3M28_11120 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M28_06035 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_07005 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_07020 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_02145 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D M3M28_07785 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M28_02905 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M28_02910 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D M3M28_02900 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D M3M28_06870 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M28_05885 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D M3M28_06970 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M28_11490 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M28_03555 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M28_04305 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M28_06765 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D M3M28_09205 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M28_08550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M28_09120 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M28_01180 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M28_05495 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M28_05670 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M28_04565 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M28_08190 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M28_08185 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M28_08140 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M28_10475 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:gsd03060] D M3M28_09830 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M28_10935 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M28_06550 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M28_06915 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D M3M28_06910 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D M3M28_06920 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M28_12345 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M28_01905 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M28_02655 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D M3M28_10745 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D M3M28_02630 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M28_06280 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D M3M28_05025 twin-arginine translocase TatA/TatE family subunit K03117 tatB; sec-independent protein translocase protein TatB D M3M28_06275 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D M3M28_02695 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D M3M28_07335 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D M3M28_07950 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:gsd04122] D M3M28_02865 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M28_07035 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D M3M28_02885 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:gsd03018] D M3M28_09070 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M28_05770 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D M3M28_07540 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M28_00710 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M28_05520 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D M3M28_08420 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M28_11735 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M28_03605 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M28_09225 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D M3M28_05760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D M3M28_12290 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:gsd03030] D M3M28_04780 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_07325 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M28_10730 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M28_10585 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M28_08465 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M28_12370 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M28_12235 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D M3M28_05900 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_02700 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:gsd03410] D M3M28_05455 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D M3M28_05695 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D M3M28_03385 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D M3M28_02475 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D M3M28_10045 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D M3M28_03365 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D M3M28_03845 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D M3M28_10470 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D M3M28_00060 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:gsd03420] D M3M28_04545 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D M3M28_06585 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_02495 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_03905 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_06600 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D M3M28_06580 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D M3M28_05115 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_05130 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_09465 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M28_03635 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:gsd03430] D M3M28_05115 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_05130 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_09465 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_04745 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D M3M28_04740 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_07325 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M28_12370 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M28_10730 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M28_08465 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M28_10585 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M28_04780 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:gsd03440] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_12375 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D M3M28_05865 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D M3M28_10725 recR; recombination mediator RecR K06187 recR; recombination protein RecR D M3M28_08385 recA; recombinase RecA K03553 recA; recombination protein RecA D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_06930 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D M3M28_06925 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D M3M28_06935 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D M3M28_02445 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D M3M28_07325 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M28_12370 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M28_10730 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M28_08465 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M28_10585 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M28_04780 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06770 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:gsd03250] D M3M28_12525 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:gsd02010] D M3M28_00110 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D M3M28_00105 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D M3M28_00100 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D M3M28_03270 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D M3M28_03275 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein D M3M28_03280 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D M3M28_04185 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D M3M28_04170 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D M3M28_04175 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D M3M28_04180 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D M3M28_03415 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D M3M28_03405 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D M3M28_07590 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D M3M28_08765 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D M3M28_07595 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein D M3M28_07600 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_08770 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_08780 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_07605 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D M3M28_08775 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D M3M28_03565 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_04520 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_04525 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D M3M28_04530 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D M3M28_04535 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D M3M28_08520 sugar-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D M3M28_08525 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D M3M28_08530 sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_10420 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D M3M28_10410 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D M3M28_10405 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D M3M28_10415 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D M3M28_00960 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D M3M28_00955 ABC transporter permease K10440 rbsC; ribose transport system permease protein D M3M28_00950 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D M3M28_11930 rhaS; rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D M3M28_11940 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D M3M28_11935 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D M3M28_11945 sugar ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D M3M28_09235 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D M3M28_09240 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D M3M28_09245 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D M3M28_09250 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M28_07665 phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D M3M28_07675 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M28_07680 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M28_07670 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D M3M28_04215 ABC transporter permease subunit K10036 glnH; glutamine transport system substrate-binding protein D M3M28_04220 amino acid ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D M3M28_08205 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D M3M28_08200 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D M3M28_08195 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D M3M28_08210 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D M3M28_01225 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D M3M28_01715 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D M3M28_01720 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D M3M28_01725 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D M3M28_01730 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D M3M28_01735 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D M3M28_12425 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M28_12435 ABC transporter permease K02072 metI; D-methionine transport system permease protein D M3M28_12430 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D M3M28_09550 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M28_09545 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M28_09540 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M28_09535 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M28_04950 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein D M3M28_04935 ABC transporter permease K13890 gsiC; glutathione transport system permease protein D M3M28_04940 ABC transporter permease K13891 gsiD; glutathione transport system permease protein D M3M28_04945 ABC transporter ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein D M3M28_04270 fepB; Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D M3M28_09555 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D M3M28_09560 iron chelate uptake ABC transporter family permease subunit K23186 fepD; iron-siderophore transport system permease protein D M3M28_04265 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D M3M28_09565 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D M3M28_04260 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D M3M28_09570 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D M3M28_04255 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D M3M28_06470 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D M3M28_06480 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein D M3M28_06475 energy-coupling factor ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D M3M28_08925 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M28_00660 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M28_10115 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D M3M28_01115 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D M3M28_01110 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D M3M28_03335 ABC transporter permease K09813 hrtB; hemin transport system permease protein D M3M28_03340 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D M3M28_05345 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D M3M28_05340 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D M3M28_10305 ABC transporter ATP-binding protein/permease K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D M3M28_10300 ABC transporter ATP-binding protein/permease K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D M3M28_08375 ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:gsd02060] D M3M28_10460 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D M3M28_07220 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D M3M28_10360 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D M3M28_09640 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D M3M28_00745 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D M3M28_00750 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D M3M28_07995 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D M3M28_10905 PfkB family carbohydrate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:gsd03070] D M3M28_04725 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D M3M28_06915 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D M3M28_06910 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D M3M28_10935 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M28_06550 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M28_09830 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M28_06920 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M28_12345 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M28_01905 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M28_02630 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M28_02655 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D M3M28_06280 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D M3M28_05025 twin-arginine translocase TatA/TatE family subunit K03117 tatB; sec-independent protein translocase protein TatB D M3M28_06275 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D M3M28_02735 LPXTG cell wall anchor domain-containing protein K11904 vgrG; type VI secretion system secreted protein VgrG B B 09132 Signal transduction C 02020 Two-component system [PATH:gsd02020] D M3M28_12630 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D M3M28_09485 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D M3M28_03530 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D M3M28_03535 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3 D M3M28_09235 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D M3M28_12640 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D M3M28_00180 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D M3M28_00175 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D M3M28_00170 tripartite tricarboxylate transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D M3M28_06510 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D M3M28_06225 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D M3M28_01885 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D M3M28_01880 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA D M3M28_12365 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D M3M28_04040 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D M3M28_03510 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D M3M28_03515 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D M3M28_05280 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D M3M28_10645 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D M3M28_10640 hypothetical protein K12510 tadB; tight adherence protein B D M3M28_05285 type II secretion system F family protein K12511 tadC; tight adherence protein C D M3M28_05290 type II secretion system F family protein K12511 tadC; tight adherence protein C D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_10535 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D M3M28_05090 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D M3M28_08585 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D M3M28_08580 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D M3M28_12170 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D M3M28_01290 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D M3M28_01105 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D M3M28_01070 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:gsd02024] D M3M28_11325 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D M3M28_07445 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D M3M28_12640 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D M3M28_07635 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D M3M28_07645 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D M3M28_07640 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D M3M28_07650 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D M3M28_01715 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D M3M28_01720 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D M3M28_01725 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D M3M28_01730 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D M3M28_01735 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D M3M28_04705 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07455 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02555 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D M3M28_00280 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D M3M28_09550 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M28_09545 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M28_09540 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M28_09535 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M28_07290 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_09155 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_12450 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_00310 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_01475 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_04595 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_07285 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_09160 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_12455 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_00305 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_01480 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_04590 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_07280 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_09165 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_12460 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_00300 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_01485 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_04585 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_05905 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_07275 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_09170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_12465 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_01430 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_04580 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_12345 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M28_10935 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M28_06550 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M28_09830 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M28_06920 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M28_01905 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M28_02630 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M28_02655 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D M3M28_00960 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly D M3M28_06205 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:gsd01501] D M3M28_09550 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M28_09545 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M28_09540 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M28_09535 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M28_11745 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D M3M28_00290 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D M3M28_07405 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:gsd01502] D M3M28_12320 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_02410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_09620 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M28_07395 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D M3M28_07390 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M28_07375 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance D M3M28_12525 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:gsd01000] C 01001 Protein kinases [BR:gsd01001] D M3M28_07440 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D M3M28_12550 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D M3M28_12555 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D M3M28_01285 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D M3M28_12630 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D M3M28_03530 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D M3M28_01885 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D M3M28_08605 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D M3M28_03615 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D M3M28_03510 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D M3M28_00165 Spo0B domain-containing protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D M3M28_01940 PAS domain-containing sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:gsd01009] D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D M3M28_12570 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D M3M28_06430 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:gsd01002] D M3M28_07335 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D M3M28_07950 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D M3M28_04725 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D M3M28_09490 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D M3M28_05485 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D M3M28_09735 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D M3M28_09740 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D M3M28_03675 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D M3M28_00590 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D M3M28_03015 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D M3M28_09630 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D M3M28_12485 C45 family peptidase K19200 IAL; isopenicillin-N N-acyltransferase like protein D M3M28_08455 type 1 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124] D M3M28_11900 DJ-1/PfpI family protein K05520 yhbO; deglycase [EC:3.5.1.124] D M3M28_12540 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M28_00855 class C sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M28_03320 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D M3M28_03470 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D M3M28_11670 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D M3M28_06190 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D M3M28_00335 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D M3M28_00315 M20/M25/M40 family metallo-hydrolase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D M3M28_04995 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D M3M28_02925 M20/M25/M40 family metallo-hydrolase K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-] D M3M28_06105 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D M3M28_09725 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D M3M28_10690 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D M3M28_05065 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D M3M28_00975 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D M3M28_00530 M50 family metallopeptidase K16922 yydH; putative peptide zinc metalloprotease protein D M3M28_11745 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D M3M28_05745 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-] D M3M28_06225 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D M3M28_10505 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D M3M28_03425 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D M3M28_03430 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D M3M28_05140 PDZ domain-containing protein K07177 K07177; Lon-like protease D M3M28_08280 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D M3M28_02695 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D M3M28_02975 Type 1 glutamine amidotransferase-like domain-containing protein K05995 pepE; dipeptidase E [EC:3.4.13.21] C 01003 Glycosyltransferases [BR:gsd01003] D M3M28_10480 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D M3M28_04295 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] D M3M28_10430 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-] D M3M28_06420 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D M3M28_05550 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:gsd01005] D M3M28_10175 glycosyltransferase K12991 rfbG; rhamnosyltransferase [EC:2.4.1.-] D M3M28_05550 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:gsd01011] D M3M28_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D M3M28_10960 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D M3M28_07370 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D M3M28_07385 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D M3M28_07400 Mur ligase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_04130 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D M3M28_12320 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_02410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D M3M28_09620 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D M3M28_05255 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D M3M28_07390 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D M3M28_07375 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D M3M28_06330 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D M3M28_12300 MATE family efflux transporter K03980 murJ; putative peptidoglycan lipid II flippase D M3M28_07405 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D M3M28_12560 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D M3M28_10505 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D M3M28_03675 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D M3M28_12540 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M28_00855 class C sortase K07284 srtA; sortase A [EC:3.4.22.70] D M3M28_06860 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] C 01004 Lipid biosynthesis proteins [BR:gsd01004] D M3M28_06015 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D M3M28_06010 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D M3M28_06000 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_08705 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D M3M28_06435 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_09365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_01685 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D M3M28_02935 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D M3M28_05005 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_10650 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D M3M28_04705 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07455 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07450 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D M3M28_00805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:gsd01006] D M3M28_07430 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M28_03090 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D M3M28_04715 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D M3M28_05870 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D M3M28_08315 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D M3M28_11195 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D M3M28_06515 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:gsd01007] D M3M28_02145 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D M3M28_08140 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M28_10475 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D M3M28_03555 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M28_05495 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M28_04305 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M28_09120 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M28_09205 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M28_08550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M28_01180 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M28_04565 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M28_05885 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D M3M28_11490 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M28_05670 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M28_06970 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M28_06870 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M28_08190 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M28_08185 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M28_10950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D M3M28_04890 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D M3M28_08270 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_12150 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D M3M28_11615 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D M3M28_02110 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D M3M28_08850 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_12595 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_01635 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D M3M28_10255 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D M3M28_10340 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_12685 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_00880 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D M3M28_02100 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D M3M28_03660 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:gsd00194] D M3M28_05595 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D M3M28_05590 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D M3M28_05585 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D M3M28_05580 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D M3M28_05575 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D M3M28_05570 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D M3M28_05565 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D M3M28_05560 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:gsd03000] D M3M28_04840 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator D M3M28_11440 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D M3M28_12275 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D M3M28_07985 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D M3M28_08870 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M3M28_09305 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M3M28_11950 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M3M28_00375 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D M3M28_05320 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D M3M28_01460 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D M3M28_06960 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D M3M28_06465 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D M3M28_03155 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D M3M28_02595 LuxR C-terminal-related transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D M3M28_11720 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D M3M28_12100 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D M3M28_09990 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D M3M28_03795 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D M3M28_11375 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D M3M28_07935 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D M3M28_07570 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D M3M28_09530 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D M3M28_08400 helix-turn-helix domain-containing protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator D M3M28_05050 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D M3M28_03985 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D M3M28_03665 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D M3M28_00420 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D M3M28_10265 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D M3M28_00870 dynein regulation protein LC7 K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D M3M28_11630 aldehyde dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_03205 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D M3M28_10080 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D M3M28_01945 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D M3M28_04445 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D M3M28_12325 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D M3M28_03545 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D M3M28_05805 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D M3M28_06825 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D M3M28_11990 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D M3M28_07315 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D M3M28_07420 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:gsd03021] D M3M28_03635 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D M3M28_09695 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M28_09975 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M28_09970 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M28_06785 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D M3M28_06205 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D M3M28_05395 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D M3M28_05675 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D M3M28_06830 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D M3M28_10930 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D M3M28_04685 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D M3M28_05520 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:gsd03019] D M3M28_05160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase D M3M28_09070 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D M3M28_02470 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M28_08420 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D M3M28_03140 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D M3M28_07540 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M28_00710 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M28_05770 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D M3M28_05520 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D M3M28_11735 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M28_03605 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M28_09225 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D M3M28_05760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D M3M28_12290 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D M3M28_06575 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D M3M28_06270 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6] D M3M28_04290 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D M3M28_07525 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:gsd03011] D M3M28_06620 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D M3M28_02745 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D M3M28_09895 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D M3M28_06885 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D M3M28_09845 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D M3M28_12255 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D M3M28_09950 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D M3M28_09860 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D M3M28_09660 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D M3M28_09930 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D M3M28_09700 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D M3M28_09955 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D M3M28_09705 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D M3M28_12080 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D M3M28_05755 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D M3M28_02675 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D M3M28_09880 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D M3M28_12245 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D M3M28_09905 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D M3M28_08445 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D M3M28_10920 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D M3M28_09910 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D M3M28_09925 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D M3M28_09920 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D M3M28_09865 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D M3M28_09855 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D M3M28_12240 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D M3M28_10875 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D M3M28_10925 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D M3M28_10870 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D M3M28_09665 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D M3M28_09875 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D M3M28_09835 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D M3M28_09890 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D M3M28_09690 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D M3M28_09850 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D M3M28_02690 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D M3M28_08220 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D M3M28_09065 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D M3M28_09900 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D M3M28_09915 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D M3M28_09060 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D M3M28_12090 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D M3M28_09840 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D M3M28_06410 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D M3M28_02465 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D M3M28_12085 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D M3M28_12360 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D M3M28_08225 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D M3M28_09710 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D M3M28_04500 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D M3M28_02030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M28_08125 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M28_02020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_08135 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_02025 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M28_08130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:gsd03009] D M3M28_02470 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M28_03140 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D M3M28_05160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase D M3M28_05840 era; GTPase Era K03595 era; GTPase D M3M28_09055 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D M3M28_05675 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D M3M28_06830 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D M3M28_10930 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D M3M28_04315 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D M3M28_06760 rRNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D M3M28_00015 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D M3M28_02425 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D M3M28_05815 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D M3M28_12335 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D M3M28_07415 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D M3M28_04300 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D M3M28_08100 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D M3M28_03560 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D M3M28_06590 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D M3M28_08050 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D M3M28_07330 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D M3M28_03735 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D M3M28_12125 GNAT family N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D M3M28_02665 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D M3M28_00495 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D M3M28_09070 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D M3M28_06865 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D M3M28_07540 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D M3M28_05385 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D M3M28_08035 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D M3M28_08285 hflX; GTPase HflX K03665 hflX; GTPase D M3M28_05545 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D M3M28_06905 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D M3M28_05690 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D M3M28_01370 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein D M3M28_09040 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D M3M28_05830 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D M3M28_04785 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D M3M28_02460 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:gsd03016] D M3M28_02145 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D M3M28_05670 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D M3M28_09120 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D M3M28_08550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M28_04305 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D M3M28_05495 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M28_01180 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D M3M28_06870 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D M3M28_05885 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D M3M28_06970 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D M3M28_11490 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D M3M28_03555 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D M3M28_09205 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D M3M28_04565 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D M3M28_08190 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D M3M28_08185 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D M3M28_08140 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M28_10475 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D M3M28_04510 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D M3M28_05820 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D M3M28_06310 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D M3M28_08430 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D M3M28_09685 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D M3M28_05705 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D M3M28_02865 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M28_05545 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D M3M28_08315 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D M3M28_12355 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D M3M28_06095 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D M3M28_05260 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D M3M28_07060 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D M3M28_11350 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D M3M28_08320 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D M3M28_02660 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D M3M28_08215 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D M3M28_02885 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D M3M28_03495 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ D M3M28_00770 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D M3M28_09610 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D M3M28_09605 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D M3M28_09615 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D M3M28_05770 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:gsd03012] D M3M28_05685 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D M3M28_08230 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D M3M28_02750 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D M3M28_09940 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M28_09945 fusA; elongation factor G K02355 fusA; elongation factor G D M3M28_05525 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D M3M28_02760 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D M3M28_05540 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D M3M28_04505 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D M3M28_09715 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D M3M28_06835 efp; elongation factor P K02356 efp; elongation factor P D M3M28_05325 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:gsd03110] D M3M28_00035 AAA family ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D M3M28_01205 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D M3M28_03440 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D M3M28_11735 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M28_03605 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M28_05810 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D M3M28_11725 DnaJ domain-containing protein K03686 dnaJ; molecular chaperone DnaJ D M3M28_11730 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D M3M28_07810 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D M3M28_09590 groES; co-chaperone GroES K04078 groES; chaperonin GroES D M3M28_00975 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D M3M28_05560 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D M3M28_02565 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D M3M28_11010 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D M3M28_12525 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D M3M28_06895 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D M3M28_07890 trxA; thioredoxin K03671 TXN; thioredoxin D M3M28_12310 trxA; thioredoxin K03671 TXN; thioredoxin D M3M28_04105 trxA; thioredoxin K03671 TXN; thioredoxin D M3M28_02800 co-chaperone YbbN K05838 ybbN; putative thioredoxin C 04131 Membrane trafficking [BR:gsd04131] D M3M28_09105 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D M3M28_05160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase D M3M28_07520 SPFH domain-containing protein K07192 FLOT; flotillin D M3M28_06565 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_08030 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_03520 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D M3M28_06700 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D M3M28_11750 MFS transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome [BR:gsd03051] D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D M3M28_06295 WYL domain-containing protein K13572 pafB; proteasome accessory factor B C 03032 DNA replication proteins [BR:gsd03032] D M3M28_12075 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M28_12365 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M28_12235 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D M3M28_05900 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_07325 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M28_12370 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M28_08465 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M28_10585 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M28_04780 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_10730 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M28_02700 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M28_07125 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M28_12390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M28_06220 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M28_12385 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M28_10595 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:gsd03036] D M3M28_02470 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D M3M28_07520 SPFH domain-containing protein K07192 FLOT; flotillin D M3M28_08675 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2 D M3M28_12075 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M28_12365 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D M3M28_11410 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D M3M28_11440 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D M3M28_02510 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D M3M28_08060 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D M3M28_08055 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D M3M28_05340 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D M3M28_07405 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D M3M28_05615 FtsK/SpoIIIE domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D M3M28_08415 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D M3M28_07365 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ D M3M28_07380 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D M3M28_05345 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D M3M28_07360 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M28_07030 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE D M3M28_10955 hypothetical protein K07269 ytfB; cell division protein YtfB D M3M28_07350 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF D M3M28_08065 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M28_12330 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M28_12325 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D M3M28_12335 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D M3M28_02730 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D M3M28_08075 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D M3M28_05030 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D M3M28_06570 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:gsd03400] D M3M28_08005 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D M3M28_08635 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D M3M28_03850 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D M3M28_05455 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D M3M28_03385 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D M3M28_05695 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D M3M28_03635 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D M3M28_00020 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D M3M28_07100 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D M3M28_03845 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D M3M28_02475 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D M3M28_10045 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D M3M28_03365 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D M3M28_10470 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D M3M28_00060 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D M3M28_02895 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D M3M28_06660 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D M3M28_06585 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_02495 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_03905 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D M3M28_06600 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D M3M28_06580 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D M3M28_05115 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_05130 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_09465 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D M3M28_09975 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D M3M28_09970 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D M3M28_09695 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D M3M28_06785 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D M3M28_04545 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D M3M28_04745 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D M3M28_04740 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D M3M28_07325 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D M3M28_12370 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D M3M28_08465 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D M3M28_10585 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D M3M28_04780 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_06405 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D M3M28_10730 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_08385 recA; recombinase RecA K03553 recA; recombination protein RecA D M3M28_06930 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D M3M28_06925 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D M3M28_06935 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D M3M28_06770 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D M3M28_07505 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D M3M28_07500 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D M3M28_01350 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D M3M28_12375 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D M3M28_02445 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D M3M28_05865 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D M3M28_10725 recR; recombination mediator RecR K06187 recR; recombination protein RecR D M3M28_08090 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D M3M28_05095 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D M3M28_07125 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M28_12390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D M3M28_06220 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M28_12385 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D M3M28_10595 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D M3M28_12075 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D M3M28_00710 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D M3M28_02955 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D M3M28_08280 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D M3M28_08625 dnaE; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D M3M28_08380 RecX family transcriptional regulator K03565 recX; regulatory protein D M3M28_10040 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D M3M28_09230 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D M3M28_08080 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D M3M28_04145 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M3M28_04165 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:gsd03029] D M3M28_05685 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D M3M28_08230 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D M3M28_02750 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D M3M28_09940 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M28_09945 fusA; elongation factor G K02355 fusA; elongation factor G D M3M28_05840 era; GTPase Era K03595 era; GTPase D M3M28_08140 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D M3M28_08550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D M3M28_05885 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D M3M28_05495 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D M3M28_07785 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M28_02905 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D M3M28_02910 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D M3M28_02900 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D M3M28_12250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_03230 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M3M28_11735 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M28_11730 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D M3M28_03605 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M28_09590 groES; co-chaperone GroES K04078 groES; chaperonin GroES D M3M28_05810 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D M3M28_11725 DnaJ domain-containing protein K03686 dnaJ; molecular chaperone DnaJ D M3M28_02865 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D M3M28_05030 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D M3M28_06515 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D M3M28_06510 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D M3M28_12345 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:gsd02000] D M3M28_10305 ABC transporter ATP-binding protein/permease K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D M3M28_10300 ABC transporter ATP-binding protein/permease K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D M3M28_02090 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D M3M28_02880 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D M3M28_03345 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D M3M28_03350 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D M3M28_10495 ABC transporter ATP-binding protein/permease K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D M3M28_08375 ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein D M3M28_04450 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D M3M28_00110 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D M3M28_00105 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D M3M28_00100 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D M3M28_03270 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D M3M28_03275 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein D M3M28_03280 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D M3M28_04185 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D M3M28_04170 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D M3M28_04175 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D M3M28_04180 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D M3M28_07635 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D M3M28_07645 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D M3M28_07640 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D M3M28_07650 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D M3M28_03415 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D M3M28_03405 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D M3M28_07590 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D M3M28_08765 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D M3M28_07595 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein D M3M28_07600 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_08770 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_08780 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D M3M28_07605 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D M3M28_08775 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D M3M28_00080 ABC transporter substrate-binding protein K24985 ribY; putative riboflavin transport system substrate-binding protein D M3M28_00085 ABC transporter permease K24986 ribX; putative riboflavin transport system permease protein D M3M28_00400 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D M3M28_00405 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D M3M28_00395 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D M3M28_03565 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_04520 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_04525 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D M3M28_04530 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D M3M28_04535 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D M3M28_08520 sugar-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D M3M28_08525 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D M3M28_08530 sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D M3M28_11930 rhaS; rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D M3M28_11940 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D M3M28_11935 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D M3M28_11945 sugar ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D M3M28_00960 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D M3M28_00955 ABC transporter permease K10440 rbsC; ribose transport system permease protein D M3M28_00950 ATP-binding cassette domain-containing protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D M3M28_10420 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D M3M28_10410 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D M3M28_10405 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D M3M28_10415 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D M3M28_08950 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein D M3M28_12265 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D M3M28_12285 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D M3M28_12280 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D M3M28_09235 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D M3M28_09240 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D M3M28_09245 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D M3M28_09250 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D M3M28_07665 phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D M3M28_07675 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M28_07680 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D M3M28_07670 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D M3M28_04215 ABC transporter permease subunit K10036 glnH; glutamine transport system substrate-binding protein D M3M28_04220 amino acid ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D M3M28_08205 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D M3M28_08200 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D M3M28_08195 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D M3M28_08210 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D M3M28_01225 amino acid ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D M3M28_01715 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D M3M28_01720 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D M3M28_01725 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D M3M28_01730 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D M3M28_01735 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D M3M28_12425 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D M3M28_12435 ABC transporter permease K02072 metI; D-methionine transport system permease protein D M3M28_12430 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D M3M28_05210 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D M3M28_05215 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D M3M28_05220 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D M3M28_04660 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_09745 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_10380 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_11520 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_01220 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_01960 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D M3M28_04650 ABC transporter permease subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_10375 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_11510 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_01235 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_01965 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_01230 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D M3M28_04655 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D M3M28_10370 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D M3M28_11515 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D M3M28_01970 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D M3M28_09550 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D M3M28_09545 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D M3M28_09540 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D M3M28_09535 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D M3M28_04950 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein D M3M28_04935 ABC transporter permease K13890 gsiC; glutathione transport system permease protein D M3M28_04940 ABC transporter permease K13891 gsiD; glutathione transport system permease protein D M3M28_04945 ABC transporter ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein D M3M28_07290 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_09155 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_12450 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_00310 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_01475 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_04595 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D M3M28_07285 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_09160 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_12455 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_00305 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_01480 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_04590 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D M3M28_07280 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_09165 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_12460 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_00300 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_01485 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_04585 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D M3M28_05905 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_07275 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_09170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_12465 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_01430 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_04580 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D M3M28_04270 fepB; Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D M3M28_09555 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D M3M28_09560 iron chelate uptake ABC transporter family permease subunit K23186 fepD; iron-siderophore transport system permease protein D M3M28_04265 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D M3M28_09565 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D M3M28_04260 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D M3M28_09570 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D M3M28_04255 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D M3M28_06695 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein D M3M28_06680 ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D M3M28_06685 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D M3M28_06690 iron chelate uptake ABC transporter family permease subunit K02015 ABC.FEV.P; iron complex transport system permease protein D M3M28_06415 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D M3M28_06470 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D M3M28_06480 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein D M3M28_06475 energy-coupling factor ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D M3M28_08925 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M28_00660 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D M3M28_08930 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M28_00665 energy-coupling factor transporter ATPase K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D M3M28_00670 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein D M3M28_12105 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D M3M28_12110 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D M3M28_12115 metal ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D M3M28_10115 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D M3M28_01115 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D M3M28_01110 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D M3M28_03335 ABC transporter permease K09813 hrtB; hemin transport system permease protein D M3M28_03340 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D M3M28_09460 ABC transporter permease K24948 yknZ; antimicrobial peptide resistance transport system permease protein D M3M28_09455 ABC transporter ATP-binding protein K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-] D M3M28_05345 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D M3M28_05340 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D M3M28_05240 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M28_10820 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M28_00490 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M28_00685 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M28_03505 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D M3M28_05235 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_10120 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_10330 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_10825 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_00485 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_00680 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_03500 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_04055 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D M3M28_08670 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D M3M28_05855 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D M3M28_08665 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D M3M28_12215 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D M3M28_06490 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D M3M28_11675 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D M3M28_09295 MFS transporter K06610 iolF; MFS transporter, SP family, inositol transporter D M3M28_01600 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D M3M28_04410 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D M3M28_10510 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D M3M28_02815 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D M3M28_01455 MHS family MFS transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein D M3M28_00735 MFS transporter K25494 nimT; MFS transporter, CP family, 2-nitroimidazole transporter D M3M28_09375 MFS transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein D M3M28_04385 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D M3M28_04855 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D M3M28_00270 DHA2 family efflux MFS transporter permease subunit K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein D M3M28_10990 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D M3M28_11435 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D M3M28_11750 MFS transporter K06902 UMF1; MFS transporter, UMF1 family D M3M28_04920 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D M3M28_10460 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D M3M28_07220 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D M3M28_10360 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D M3M28_09640 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D M3M28_00745 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D M3M28_00750 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component D M3M28_02135 ion transporter K08714 VGSC; voltage-gated sodium channel D M3M28_07025 ammonium transporter K03320 amt; ammonium transporter, Amt family D M3M28_08350 ammonium transporter K03320 amt; ammonium transporter, Amt family D M3M28_11710 formate/nitrite transporter family protein K02598 nirC; nitrite transporter D M3M28_03720 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D M3M28_03305 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D M3M28_02140 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D M3M28_00620 CrcB family protein K06199 crcB; fluoride exporter D M3M28_00625 CrcB family protein K06199 crcB; fluoride exporter D M3M28_05420 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_05425 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_05835 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_07795 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_07800 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_02635 amino acid permease K11735 gabP; GABA permease D M3M28_02260 amino acid permease K11737 cycA; D-serine/D-alanine/glycine transporter D M3M28_06065 APC family permease K14052 puuP; putrescine importer D M3M28_10760 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D M3M28_08690 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D M3M28_10810 DMT family transporter K15269 pecM; probable blue pigment (indigoidine) exporter D M3M28_06460 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D M3M28_08970 hypothetical protein K11939 rhtA; inner membrane transporter RhtA D M3M28_07625 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D M3M28_09585 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D M3M28_00280 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D M3M28_11965 gluconate:H+ symporter K06155 gntT; Gnt-I system high-affinity gluconate transporter D M3M28_10755 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter D M3M28_03210 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D M3M28_02580 cation acetate symporter K14393 actP; cation/acetate symporter D M3M28_10535 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D M3M28_11300 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D M3M28_04380 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D M3M28_11315 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein D M3M28_11320 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D M3M28_08840 cytosine permease K10974 codB; cytosine permease D M3M28_01575 cytosine permease K23467 tgnP; trigonelline permease D M3M28_09180 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D M3M28_07875 chrA; chromate efflux transporter K07240 chrA; chromate transporter D M3M28_07860 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D M3M28_00415 Nramp family divalent metal transporter K03322 mntH; manganese transport protein D M3M28_04815 bile acid:sodium symporter K03325 ACR3; arsenite transporter D M3M28_07885 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter D M3M28_07880 metalloregulator ArsR/SmtB family transcription factor K03325 ACR3; arsenite transporter D M3M28_02040 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A D M3M28_02045 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D M3M28_02050 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D M3M28_02055 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D M3M28_02060 monovalent cation/H+ antiporter complex subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D M3M28_02065 mnhG; monovalent cation/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D M3M28_12300 MATE family efflux transporter K03980 murJ; putative peptidoglycan lipid II flippase D M3M28_08645 AEC family transporter K13936 mdcF; malonate transporter and related proteins D M3M28_11955 AEC family transporter K13936 mdcF; malonate transporter and related proteins D M3M28_04875 KUP/HAK/KT family potassium transporter K03549 kup; KUP system potassium uptake protein D M3M28_11445 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D M3M28_12620 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D M3M28_12625 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D M3M28_00180 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D M3M28_00175 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D M3M28_00170 tripartite tricarboxylate transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D M3M28_04675 AI-2E family transporter K20469 K20469; putative heme transporter D M3M28_06155 VIT family protein K22736 VIT; vacuolar iron transporter family protein D M3M28_11815 VIT1/CCC1 transporter family protein K22736 VIT; vacuolar iron transporter family protein D M3M28_07380 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D M3M28_04230 FTR1 family protein K07243 FTR; high-affinity iron transporter D M3M28_04235 EfeM/EfeO family lipoprotein K07224 efeO; iron uptake system component EfeO D M3M28_04240 efeB; iron uptake transporter deferrochelatase/peroxidase subunit K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D M3M28_11230 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D M3M28_01285 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] C 02044 Secretion system [BR:gsd02044] D M3M28_04725 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D M3M28_05280 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D M3M28_10645 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D M3M28_10640 hypothetical protein K12510 tadB; tight adherence protein B D M3M28_05285 type II secretion system F family protein K12511 tadC; tight adherence protein C D M3M28_05290 type II secretion system F family protein K12511 tadC; tight adherence protein C D M3M28_08515 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D M3M28_08510 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC D M3M28_02735 LPXTG cell wall anchor domain-containing protein K11904 vgrG; type VI secretion system secreted protein VgrG D M3M28_01905 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D M3M28_06915 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D M3M28_10935 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D M3M28_06910 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D M3M28_06550 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D M3M28_09830 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D M3M28_02655 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D M3M28_02630 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D M3M28_06920 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D M3M28_12345 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D M3M28_06280 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D M3M28_05025 twin-arginine translocase TatA/TatE family subunit K03117 tatB; sec-independent protein translocase protein TatB D M3M28_06275 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:gsd02042] D M3M28_05420 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_05425 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_05835 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_07795 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_07800 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D M3M28_04710 hemolysin III family protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:gsd02022] D M3M28_12630 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D M3M28_03530 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D M3M28_03535 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3 D M3M28_12640 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D M3M28_01885 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D M3M28_01880 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA D M3M28_08605 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D M3M28_03615 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D M3M28_08610 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D M3M28_03620 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D M3M28_06130 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D M3M28_03510 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D M3M28_03515 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D M3M28_00165 Spo0B domain-containing protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D M3M28_01940 PAS domain-containing sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D M3M28_06670 response regulator K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:gsd02035] D M3M28_05280 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D M3M28_10645 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:gsd04812] D M3M28_07360 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M28_08065 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M28_12330 AAA family ATPase K03496 parA; chromosome partitioning protein D M3M28_12325 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:gsd04147] D M3M28_01810 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D M3M28_04620 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D M3M28_06565 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_08030 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D M3M28_06560 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D M3M28_06700 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D M3M28_12525 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D M3M28_00335 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D M3M28_07520 SPFH domain-containing protein K07192 FLOT; flotillin D M3M28_03605 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D M3M28_11735 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D M3M28_06530 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D M3M28_09505 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M28_09580 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D M3M28_09940 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D M3M28_05160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase D M3M28_05820 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D M3M28_04705 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_07455 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_02950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D M3M28_01505 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D M3M28_09825 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D M3M28_06070 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D M3M28_08145 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D M3M28_08150 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D M3M28_09410 hypothetical protein K01482 DDAH; dimethylargininase [EC:3.5.3.18] D M3M28_11535 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D M3M28_09335 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D M3M28_02850 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D M3M28_09510 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D M3M28_06120 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_06160 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_09750 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_01615 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D M3M28_12680 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D M3M28_09485 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D M3M28_12700 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_00875 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D M3M28_09415 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D M3M28_06185 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D M3M28_11455 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D M3M28_06535 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D M3M28_06555 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D M3M28_03520 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:gsd02048] D M3M28_09005 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D M3M28_09015 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D M3M28_09020 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D M3M28_04085 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D M3M28_07715 restriction endonuclease K07448 mrr; restriction system protein D M3M28_12010 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE D M3M28_07775 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1 D M3M28_07770 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1 D M3M28_10815 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1 D M3M28_07360 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D M3M28_02145 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D M3M28_02865 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:gsd01504] D M3M28_08375 ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein D M3M28_04855 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D M3M28_11745 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D M3M28_00290 class A beta-lactamase-related serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D M3M28_11715 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:gsd00537] D M3M28_09485 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D M3M28_00335 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:gsd03100] D M3M28_03755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_12405 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_09030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D M3M28_03145 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_05490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_11430 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_03700 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D M3M28_05915 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D M3M28_00790 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D M3M28_07010 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D M3M28_02215 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M28_04460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D M3M28_02375 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M28_00785 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D M3M28_07015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_11835 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_03375 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D M3M28_03135 tRNA-His K14226 tRNA-His; tRNA His D M3M28_12400 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D M3M28_04640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_12585 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_06350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_05270 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_06675 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D M3M28_01975 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M28_09270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D M3M28_05150 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M28_05980 tRNA-Ile K14230 tRNA-Met; tRNA Met D M3M28_11100 tRNA-Met K14230 tRNA-Met; tRNA Met D M3M28_00795 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D M3M28_07980 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_10675 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_03390 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D M3M28_10850 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_11470 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_01360 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_11480 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D M3M28_10550 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_11105 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_03575 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D M3M28_10940 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D M3M28_11120 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D M3M28_06035 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_07005 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_07020 tRNA-Val K14237 tRNA-Val; tRNA Val D M3M28_02020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_08135 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D M3M28_02025 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M28_08130 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D M3M28_02030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M28_08125 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D M3M28_10745 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D M3M28_06095 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D M3M28_05360 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D M3M28_05175 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306] D M3M28_04120 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D M3M28_11865 SDR family oxidoreductase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D M3M28_00210 FAD-binding protein K05888 K05888; L-gulono-1,4-lactone dehydrogenase [EC:1.1.2.-] D M3M28_00135 aldehyde dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D M3M28_02220 NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D M3M28_10345 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D M3M28_07465 mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15] D M3M28_03195 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D M3M28_03585 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D M3M28_04325 glutathione S-transferase C-terminal domain-containing protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D M3M28_02560 Dyp-type peroxidase K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19] D M3M28_01955 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D M3M28_04895 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D M3M28_11015 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D M3M28_06030 redoxin domain-containing protein K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29] D M3M28_10685 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D M3M28_10750 cysteine dioxygenase family protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D M3M28_02175 LLM class flavin-dependent oxidoreductase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D M3M28_00260 antibiotic biosynthesis monooxygenase K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57] D M3M28_11830 ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D M3M28_09760 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D M3M28_11145 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D M3M28_07870 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D M3M28_07880 metalloregulator ArsR/SmtB family transcription factor K03325 ACR3; arsenite transporter D M3M28_09220 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189] D M3M28_06265 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D M3M28_11055 glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D M3M28_06705 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D M3M28_06140 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D M3M28_11880 four-carbon acid sugar kinase family protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D M3M28_06125 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D M3M28_11035 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D M3M28_07865 low molecular weight phosphatase family protein K18701 arsC; arsenate-mycothiol transferase [EC:2.8.4.2] D M3M28_11005 low molecular weight phosphatase family protein K18701 arsC; arsenate-mycothiol transferase [EC:2.8.4.2] D M3M28_03255 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D M3M28_00595 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D M3M28_01910 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D M3M28_05075 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D M3M28_03820 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D M3M28_04310 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D M3M28_12705 thermonuclease family protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D M3M28_11680 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-] D M3M28_00045 beta-lactamase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D M3M28_11550 hypothetical protein K01459 E3.5.1.77; N-carbamoyl-D-amino-acid hydrolase [EC:3.5.1.77] D M3M28_05925 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D M3M28_07460 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D M3M28_11065 PIG-L family deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103] D M3M28_04695 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115] D M3M28_05230 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D M3M28_00130 alpha/beta hydrolase K23465 tgnD; (E)-2-((N-methylformamido)methylene)succinate hydrolase [EC:3.5.1.-] D M3M28_05640 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D M3M28_01860 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D M3M28_02430 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D M3M28_11855 aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D M3M28_08370 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53] D M3M28_12480 FMN-binding negative transcriptional regulator K25585 ktzT; L-piperazate synthase [EC:4.8.1.1] D M3M28_11925 L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D M3M28_05750 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D M3M28_11875 hydroxypyruvate isomerase family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D M3M28_06325 mshC; cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13] D M3M28_03900 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D M3M28_03805 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D M3M28_08240 cation-translocating P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] D M3M28_07940 cadA; cadmium-translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D M3M28_09765 flavodoxin domain-containing protein K06205 mioC; MioC protein D M3M28_08180 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D M3M28_00155 tcuA; FAD-dependent tricarballylate dehydrogenase TcuA K13796 cobZ; tricarballylate dehydrogenase D M3M28_11460 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism D M3M28_04140 nrdI; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D M3M28_06655 EI24 domain-containing protein K06203 cysZ; CysZ protein D M3M28_07355 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein D M3M28_03920 cupin K21700 bauB; beta-alanine degradation protein BauB C 99986 Glycan metabolism D M3M28_10090 O-antigen ligase family protein K16567 exoQ; exopolysaccharide production protein ExoQ D M3M28_10155 lysylphosphatidylglycerol synthase domain-containing protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism C 99988 Secondary metabolism D M3M28_02315 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D M3M28_07515 dienelactone hydrolase family protein K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D M3M28_02280 cold-shock protein K03704 cspA; cold shock protein D M3M28_03600 cold-shock protein K03704 cspA; cold shock protein D M3M28_03650 cold shock domain-containing protein K03704 cspA; cold shock protein D M3M28_08355 P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2 C 99974 Translation C 99975 Protein processing D M3M28_03420 tig; trigger factor K03545 tig; trigger factor D M3M28_05350 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D M3M28_04135 nrdH; glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH D M3M28_02720 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein D M3M28_11225 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein C 99976 Replication and repair D M3M28_04770 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D M3M28_02715 YraN family protein K07460 yraN; putative endonuclease D M3M28_02725 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D M3M28_06890 replication-associated recombination protein A K07478 ycaJ; putative ATPase D M3M28_05060 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_08735 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_08820 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_10900 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_04405 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_04570 IS30 family transposase K07482 K07482; transposase, IS30 family D M3M28_03765 transposase K07483 K07483; transposase D M3M28_03775 IS3 family transposase K07497 K07497; putative transposase D M3M28_03965 IS3 family transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D M3M28_05470 PspA/IM30 family protein K03969 pspA; phage shock protein A B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D M3M28_05920 APC family permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M28_08875 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D M3M28_05330 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D M3M28_12710 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D M3M28_02820 alanine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D M3M28_00985 cytosine permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D M3M28_12340 DNA-binding protein K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins D M3M28_09680 carbon starvation protein A K06200 cstA; carbon starvation protein D M3M28_04965 typA; translational GTPase TypA K06207 typA; GTP-binding protein D M3M28_05825 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D M3M28_11135 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins C 99994 Others D M3M28_03525 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D M3M28_01530 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport B B 09194 Poorly characterized C 99996 General function prediction only D M3M28_03300 globin K06886 glbN; hemoglobin D M3M28_02010 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D M3M28_02320 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D M3M28_06505 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D M3M28_06500 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D M3M28_10465 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D M3M28_07040 SufE family protein K02426 sufE; cysteine desulfuration protein SufE D M3M28_03035 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein D M3M28_06370 VOC family protein K04750 phnB; PhnB protein D M3M28_01325 VOC family protein K04750 phnB; PhnB protein D M3M28_04670 LemA family protein K03744 lemA; LemA protein D M3M28_08590 DedA family protein K03975 dedA; membrane-associated protein D M3M28_11705 VTT domain-containing protein K03975 dedA; membrane-associated protein D M3M28_11385 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein D M3M28_02015 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein D M3M28_01385 DUF202 domain-containing protein K00389 yidH; putative membrane protein D M3M28_12155 phage holin family protein K08972 K08972; putative membrane protein D M3M28_01020 PH domain-containing protein K08981 K08981; putative membrane protein D M3M28_03160 DUF1304 domain-containing protein K08987 K08987; putative membrane protein D M3M28_08920 YchJ family protein K09858 K09858; SEC-C motif domain protein C 99997 Function unknown D M3M28_04485 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D M3M28_07050 lysophospholipase K06889 K06889; uncharacterized protein D M3M28_11755 DNA-binding protein K06934 K06934; uncharacterized protein D M3M28_02670 RNA-binding protein K06960 K06960; uncharacterized protein D M3M28_11090 N-acetyltransferase K06975 K06975; uncharacterized protein D M3M28_11595 N-acetyltransferase K06975 K06975; uncharacterized protein D M3M28_04835 VOC family protein K06996 K06996; uncharacterized protein D M3M28_04095 VOC family protein K06996 K06996; uncharacterized protein D M3M28_01320 ExeM/NucH family extracellular endonuclease K07004 K07004; uncharacterized protein D M3M28_01620 amidohydrolase family protein K07045 K07045; uncharacterized protein D M3M28_00695 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein D M3M28_04800 type II toxin-antitoxin system VapC family toxin K07064 K07064; uncharacterized protein D M3M28_02325 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein D M3M28_04425 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D M3M28_09035 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D M3M28_10455 TSUP family transporter K07090 K07090; uncharacterized protein D M3M28_10670 metallophosphoesterase K07098 K07098; uncharacterized protein D M3M28_12040 DUF6198 family protein K07149 K07149; uncharacterized protein D M3M28_06085 hypothetical protein K07164 K07164; uncharacterized protein D M3M28_12350 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D M3M28_04630 DUF501 domain-containing protein K09009 K09009; uncharacterized protein D M3M28_05145 UPF0182 family protein K09118 K09118; uncharacterized protein D M3M28_03435 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein D M3M28_01015 PH domain-containing protein K09167 K09167; uncharacterized protein D M3M28_00740 YciI family protein K09780 K09780; uncharacterized protein D M3M28_04885 DUF808 domain-containing protein K09781 K09781; uncharacterized protein D M3M28_05600 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein D M3M28_01490 winged helix DNA-binding domain-containing protein K09927 K09927; uncharacterized protein D M3M28_07690 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein D M3M28_06625 DUF779 domain-containing protein K09959 K09959; uncharacterized protein D M3M28_01420 HutD family protein K09975 K09975; uncharacterized protein D M3M28_05680 YlxR family protein K07742 ylxR; uncharacterized protein ! 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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 13, 2024