+F Repair protein KO #

  DNA Repair and Recombination Proteins - Halanaeroarchaeum sp. HSR-CO

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HSRCO_0257 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HSRCO_0966 ada2; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HSRCO_1501 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HSRCO_2181 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HSRCO_2087 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E HSRCO_1036 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HSRCO_1214 nth2; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E HSRCO_2738 dnaN; DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen E HSRCO_1593 fen1; 5'-3' exonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E HSRCO_1904 cdc9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E HSRCO_1455 xpb; ssDNA-dependent ATPase, helicase superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E HSRCO_2852 dinG2; Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E HSRCO_0774 rpa1-2; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D Other NER factors E HSRCO_1904 cdc9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E HSRCO_0774 rpa1-2; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E HSRCO_2738 dnaN; DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen E HSRCO_1904 cdc9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E HSRCO_0774 rpa1-2; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D HSRCO_2738 dnaN; DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HSRCO_1041 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HSRCO_0582 dcd; Deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HSRCO_0257 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HSRCO_0966 ada2; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HSRCO_1501 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HSRCO_2653 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HSRCO_2137 alkA2; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HSRCO_2181 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HSRCO_1036 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HSRCO_1214 nth2; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HSRCO_0520 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E HSRCO_0866 nfo2; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E HSRCO_1013 nfi; Deoxyinosine 3'endonuclease (endonuclease V) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E HSRCO_0134 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HSRCO_2870 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E HSRCO_0628 uvrA; Excinuclease ABC subunit A, ATPase K03701 uvrA; excinuclease ABC subunit A E HSRCO_2874 uvrB; Excinuclease ABC subunit B, helicase K03702 uvrB; excinuclease ABC subunit B E HSRCO_2872 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E HSRCO_0620 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HSRCO_1551 recB3; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HSRCO_2870 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HSRCO_0703 mutS; Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E HSRCO_2728 mutS2; DNA structure-specific ATPase involved in suppression of recombination, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HSRCO_0704 mutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E HSRCO_2870 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HSRCO_0620 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HSRCO_1551 recB3; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HSRCO_0017 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HSRCO_1125 sbcC; ATPase involved in DNA repair, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HSRCO_1124 sbcD; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HSRCO_0134 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins E HSRCO_0808 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E HSRCO_2791 recA2; RecA/RadA recombinase K04483 radA; DNA repair protein RadA E HSRCO_2338 recA; RecA/RadA recombinase K04484 radB; DNA repair protein RadB E HSRCO_2739 Holliday junction resolvase, archaeal type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E HSRCO_1125 sbcC; ATPase involved in DNA repair, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E HSRCO_1124 sbcD; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E HSRCO_0081 bRR2; Replicative superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HSRCO_1916 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HSRCO_1915 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HSRCO_1003 topA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F HSRCO_2685 Topoisomerase DNA binding C4 zinc finger fused to uncharacterized N-terminal domain often associated with RecB-like endonuclease K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HSRCO_0134 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HSRCO_2870 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HSRCO_0628 uvrA; Excinuclease ABC subunit A, ATPase K03701 uvrA; excinuclease ABC subunit A F HSRCO_2874 uvrB; Excinuclease ABC subunit B, helicase K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HSRCO_1791 dpo4; Family Y DNA polymerase K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D HSRCO_1010 pol4; DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X) C DNA helicases D HSRCO_2027 lhr; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D HSRCO_2193 lhr2; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HSRCO_1041 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HSRCO_0582 dcd; Deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HSRCO_2328 nrdA; Ribonucleotide reductase associated ATP-cone domain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HSRCO_2582 nrdA2; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D HSRCO_1004 Protein, predicted to be involved in DNA repair K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024