+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Halomonas sp. 1513

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D BWR19_11770 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D BWR19_03020 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D BWR19_06030 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C BWR19_11765 GTPase Era K03595 era; GTPase C BWR19_17375 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C BWR19_01310 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C BWR19_14300 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C BWR19_01240 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C BWR19_05510 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C BWR19_17715 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D BWR19_09670 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D BWR19_03775 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BWR19_16145 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BWR19_05800 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D BWR19_02055 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BWR19_00195 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BWR19_03715 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BWR19_18835 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BWR19_12190 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BWR19_12200 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BWR19_03250 rRNA methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D BWR19_13495 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D BWR19_03555 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BWR19_01195 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BWR19_07685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BWR19_02125 rRNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D BWR19_18915 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D BWR19_13865 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D BWR19_06830 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D BWR19_16020 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BWR19_13495 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D BWR19_11735 23S rRNA (uracil(1939)-C(5))-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BWR19_03135 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BWR19_12015 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BWR19_17280 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BWR19_13960 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] B ribosomal protein modification factors C BWR19_02045 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BWR19_06375 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BWR19_06165 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C BWR19_01955 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C BWR19_11195 protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C BWR19_07600 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C BWR19_13145 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C BWR19_14000 transcription factor K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C BWR19_11770 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C BWR19_12020 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C BWR19_12400 ribonuclease E/G K08301 rng; ribonuclease G [EC:3.1.26.-] C BWR19_00285 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C BWR19_03015 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C BWR19_04390 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C BWR19_11765 GTPase Era K03595 era; GTPase C BWR19_06025 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C BWR19_16055 ribosome biogenesis GTPase Der K03977 engA; GTPase C BWR19_17375 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C BWR19_13835 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A C BWR19_06070 GTPase HflX K03665 hflX; GTPase B Other maturation factors C BWR19_16120 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C BWR19_18595 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BWR19_01250 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C BWR19_01235 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C BWR19_07680 ribosome silencing factor K09710 ybeB; ribosome-associated protein C BWR19_13110 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C BWR19_01190 ribosome assembly protein YhbY K07574 yhbY; RNA-binding protein C BWR19_12385 hypothetical protein K09889 yjgA; ribosome-associated protein C BWR19_13870 ribosome modulation factor K03812 rmf; ribosome modulation factor C BWR19_12360 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C BWR19_12590 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C BWR19_11995 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024