+E Transcription factors KO #

  Transcription Factors - Halomicrobium mukohataei JP60

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others D E5139_05970 single-stranded DNA binding protein K07466 RFA1; replication factor A1 C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D E5139_05510 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins D E5139_06785 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family C DeoR family D E5139_00590 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family C GntR family C TetR/AcrR family C Lrp/AsnC family D E5139_13955 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA C LuxR family C MarR family D E5139_12860 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family C Fur family C IclR family D E5139_07895 IclR family transcriptional regulator K21827 arcR; IclR family transcriptional regulator, arginine deiminase pathway regulator C CRP/FNR family C Rrf2 family C ArsR family D E5139_15030 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D E5139_12175 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D E5139_16585 winged helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D E5139_10030 metalloregulator ArsR/SmtB family transcription factor K07721 K07721; ArsR family transcriptional regulator C XRE family D E5139_09920 transcriptional regulator K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D E5139_03435 helix-turn-helix domain-containing protein K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator C PadR family D E5139_05935 PadR family transcriptional regulator K23305 gvpE; PadR family transcriptional regulator, activator of gas vesicle formation C Other families D E5139_00770 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D E5139_01905 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D E5139_16245 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D E5139_05220 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D E5139_00150 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D E5139_07480 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_13260 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_14460 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_14500 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_11035 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_03535 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_04335 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_14150 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_04210 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D E5139_03380 PAS domain S-box protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D E5139_06590 PAS domain S-box protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D E5139_16765 PAS domain S-box protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D E5139_02990 PAS domain S-box protein K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins D E5139_10905 bacterio-opsin activator K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator D E5139_16220 bacterio-opsin activator K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator D E5139_14450 orotate phosphoribosyltransferase-like protein K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism D E5139_10190 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D E5139_07410 transcriptional regulator K07728 K07728; putative transcriptional regulator D E5139_05415 transcriptional regulator K07729 K07729; putative transcriptional regulator D E5139_13435 winged helix-turn-helix transcriptional regulator K07730 K07730; putative transcriptional regulator D E5139_11845 helix-turn-helix domain-containing protein K07731 K07731; putative transcriptional regulator B Ribbon-helix-helix C CopG family D E5139_04780 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D E5139_12610 CopG family ribbon-helix-helix protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families B Other transcription factors C BglG family C Others D E5139_16620 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0