+D	GENES	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a> &nbsp; KEGG Orthology (KO) - Natranaeroarchaeum sulfidigenes </h2>
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A09100 Metabolism
B
B  09101 Carbohydrate metabolism
C    00010 Glycolysis / Gluconeogenesis [PATH:hara00010]
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
D      AArcS_0748 pgi; Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0062 fba; Fructose/tagatose bisphosphate aldolase	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      AArcS_2621 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acidsynthase, DhnA-aldolase family	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      AArcS_1392 tpiA; Triosephosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      AArcS_0754 asd; Aspartate-semialdehyde dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      AArcS_0753 gapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D      AArcS_0755 pgk; 3-phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      AArcS_2847 gpmI; Phosphoglyceromutase	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      AArcS_2363 pykA2; Phosphohistidine swiveling domain of PEP-utilizing enzymes	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      AArcS_2045 ppsA; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      AArcS_0312 acoA; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0434 acoA2; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0311 acoB; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      AArcS_0310 aceF; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_2294 porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      AArcS_2293 porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1012 acdAB; Acyl-CoA synthetase, ATP-grasp containing subunit	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C    00020 Citrate cycle (TCA cycle) [PATH:hara00020]
D      AArcS_2924 gltA; Citrate synthase	K01647 CS; citrate synthase [EC:2.3.3.1]
D      AArcS_2645 acnA; Aconitase A	K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D      AArcS_2830 icd; Isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_2294 porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      AArcS_2293 porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      AArcS_0857 sucD; Succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      AArcS_0856 sucC; Succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      AArcS_1955 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_2372 sdhA2; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_1954 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-Sprotein subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      AArcS_1952 sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      AArcS_1953 sdhD; Succinate dehydrogenase, hydrophobic anchor subunit	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      AArcS_1422 fumC; Fumarase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_0312 acoA; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0434 acoA2; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0311 acoB; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      AArcS_0310 aceF; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
C    00030 Pentose phosphate pathway [PATH:hara00030]
D      AArcS_0748 pgi; Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      AArcS_2737 wcaG11; Nucleoside-diphosphate-sugar epimerase	K19243 azf; NAD+ dependent glucose-6-phosphate dehydrogenase [EC:1.1.1.388]
D      AArcS_2138 gnd; putative 6-phosphogluconate dehydrogenase	K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D      AArcS_3089 rpiA; Ribose 5-phosphate isomerase	K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D      AArcS_1663 hypothetical protein	K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D      AArcS_1092 deoC; Deoxyribose-phosphate aldolase	K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D      AArcS_1443 manB3; Phosphomannomutase	K22199 ppm; phosphopentomutase [EC:5.4.2.7]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_1088 rbsK2; Sugar kinase, ribokinase family	K26208 E2.7.1.239; alpha-D-ribose-1-phosphate 5-kinase (ATP) [EC:2.7.1.239]
D      AArcS_1091 gcd22; Translation initiation factor 2B subunit, eIF-2Balpha/beta/delta family	K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29]
D      AArcS_3125 prsA; Phosphoribosylpyrophosphate synthetase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      AArcS_2214 eda; 2-keto-3-deoxy-6-phosphogluconate aldolase	K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D      AArcS_0927 fabG5; Short-chain alcohol dehydrogenase	K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D      AArcS_2091 fabG8; Short-chain alcohol dehydrogenase	K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D      AArcS_2327 tdh4; Threonine dehydrogenase or related Zn-dependent dehydrogenase	K22969 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D      AArcS_0880 Glucose/sorbosone dehydrogenase	K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D      AArcS_2287 rspA4; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	K05308 gnaD; gluconate/galactonate dehydratase [EC:4.2.1.140]
D      AArcS_2152 rbsK3; Sugar kinase, ribokinase family	K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D      AArcS_1772 Aldehyde:ferredoxin oxidoreductase	K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D      AArcS_2758 Aldehyde:ferredoxin oxidoreductase	K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D      AArcS_3098 gckA; Glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      AArcS_0062 fba; Fructose/tagatose bisphosphate aldolase	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      AArcS_2621 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acidsynthase, DhnA-aldolase family	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C    00040 Pentose and glucuronate interconversions [PATH:hara00040]
D      AArcS_2832 Cupin domain containing protein	K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D      AArcS_0445 aglM; UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      AArcS_0277 iolE; Sugar phosphate isomerase/epimerase	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      AArcS_0063 mviM; putative dehydrogenase	K14273 xdh; D-xylose 1-dehydrogenase (NADP+, D-xylono-1,5-lactone-forming) [EC:1.1.1.179]
C    00051 Fructose and mannose metabolism [PATH:hara00051]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0058 rbsK; Sugar kinase, ribokinase family	K27475 khk; ketohexokinase [EC:2.7.1.3]
D      AArcS_0060 fruK; Fructose-1-phosphate kinase or kinase (PfkB)	K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D      AArcS_0277 iolE; Sugar phosphate isomerase/epimerase	K01805 xylA; xylose isomerase [EC:5.3.1.5]
D      AArcS_0062 fba; Fructose/tagatose bisphosphate aldolase	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      AArcS_2621 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acidsynthase, DhnA-aldolase family	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      AArcS_1392 tpiA; Triosephosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      AArcS_0221 ptsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D      AArcS_0224 fruB2; Phosphotransferase system fructose-specific component IIB	K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D      AArcS_0220 fruA; Phosphotransferase system, fructose-specific IICcomponent	K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C    00052 Galactose metabolism [PATH:hara00052]
D      AArcS_0473 wcaG2; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0484 wcaG3; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0486 wcaG4; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0488 wcaG5; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_1803 wcaG7; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
D      AArcS_2082 hypothetical protein	K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D      AArcS_2086 celF; Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D      AArcS_2090 rspA3; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D      AArcS_2287 rspA4; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	K05308 gnaD; gluconate/galactonate dehydratase [EC:4.2.1.140]
D      AArcS_1167 sacC; Glycosyl hydrolases family 32 (levanase/invertase)	K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D      AArcS_1202 amyA5; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      AArcS_1404 amyA6; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      AArcS_1405 amyA7; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C    00053 Ascorbate and aldarate metabolism [PATH:hara00053]
D      AArcS_0445 aglM; UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00500 Starch and sucrose metabolism [PATH:hara00500]
D      AArcS_1167 sacC; Glycosyl hydrolases family 32 (levanase/invertase)	K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D      AArcS_1202 amyA5; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      AArcS_1404 amyA6; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      AArcS_1405 amyA7; Glycosidase	K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D      AArcS_1170 Glycosyl hydrolase 68 family, including levansucrase and invertase	K00692 sacB; levansucrase [EC:2.4.1.10]
D      AArcS_2185 bglX; Bifunctional b-D-xylosidase/a-L-arabinosidase orrelated glycosidase	K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D      AArcS_1062 Uncharacterized membrane protein, DUF2061 family	K01176 AMY; alpha-amylase [EC:3.2.1.1]
D      AArcS_2696 Uncharacterized membrane protein, DUF2061 family	K01176 AMY; alpha-amylase [EC:3.2.1.1]
D      AArcS_0417 sga1; Glycosyl hydrolase family 15	K01178 SGA1; glucoamylase [EC:3.2.1.3]
D      AArcS_1519 malQ; 4-alpha-glucanotransferase	K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D      AArcS_0529 Fe-S-cluster containining protein	K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
D      AArcS_0748 pgi; Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C    00520 Amino sugar and nucleotide sugar metabolism [PATH:hara00520]
D      AArcS_0440 glmS; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_1819 glmS2; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_0505 manB; Phosphomannomutase	K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D      AArcS_0504 gcd1-2; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D      AArcS_0848 gcd1-4; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D      AArcS_1799 wecC2; UDP-N-acetyl-D-mannosaminuronate dehydrogenase	K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D      AArcS_1808 wecC3; UDP-N-acetyl-D-mannosaminuronate dehydrogenase	K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D      AArcS_0485 wecC; UDP-N-acetyl-D-mannosaminuronate dehydrogenase	K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_0445 aglM; UDP-glucose 6-dehydrogenase	K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D      AArcS_0473 wcaG2; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0484 wcaG3; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0486 wcaG4; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0488 wcaG5; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_1803 wcaG7; Nucleoside-diphosphate-sugar epimerase	K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D      AArcS_0748 pgi; Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C    00620 Pyruvate metabolism [PATH:hara00620]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_2294 porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      AArcS_2293 porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      AArcS_0312 acoA; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0434 acoA2; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0311 acoB; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      AArcS_0310 aceF; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_2363 pykA2; Phosphohistidine swiveling domain of PEP-utilizing enzymes	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      AArcS_0958 Acetyl/propionyl-CoA carboxylase, alpha subunit	K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D      AArcS_1765 acyP; Acylphosphatase	K01512 acyP; acylphosphatase [EC:3.6.1.7]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_1012 acdAB; Acyl-CoA synthetase, ATP-grasp containing subunit	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      AArcS_0180 gloA; Lactoylglutathione lyase or related enzyme	K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D      AArcS_0630 gloA2; Lactoylglutathione lyase or related enzyme	K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D      AArcS_2397 sfcA; Malic enzyme	K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_1422 fumC; Fumarase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      AArcS_0273 ppc; Phosphoenolpyruvate carboxylase	K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D      AArcS_2045 ppsA; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0840 leuA; Isopropylmalate/homocitrate/citramalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00630 Glyoxylate and dicarboxylate metabolism [PATH:hara00630]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_2924 gltA; Citrate synthase	K01647 CS; citrate synthase [EC:2.3.3.1]
D      AArcS_2645 acnA; Aconitase A	K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0977 gloA3; Lactoylglutathione lyase or related enzyme	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      AArcS_0958 Acetyl/propionyl-CoA carboxylase, alpha subunit	K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D      AArcS_0961 Acetyl-CoA carboxylase, carboxyltransferase component	K19312 pccB; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D      AArcS_0960 Uncharacterized protein	K22568 pccX; acetyl-CoA/propionyl-CoA carboxylase, PccX subunit [EC:6.4.1.2 6.4.1.3]
D      AArcS_0912 sbm; Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)	K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D      AArcS_0922 sbm2; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_1052 sbm3; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_1430 gph2; HAD superfamily hydrolase	K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D      AArcS_2702 gph4; HAD superfamily hydrolase	K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D      AArcS_1269 cof; HAD superfamily hydrolase	K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18]
D      AArcS_1530 rbcL; Ribulose 1,5-bisphosphate carboxylase, large subunit	K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D      AArcS_2470 gltB; Glutamate synthase	K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_1253 glyA; Glycine/serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      AArcS_0719 gcvP; Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      AArcS_0720 gcvP2; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      AArcS_0716 gcvT; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_3009 gcvT2; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0717 gcvH; Glycine cleavage system H protein (lipoate-binding)	K02437 gcvH; glycine cleavage system H protein
D      AArcS_3098 gckA; Glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      AArcS_2214 eda; 2-keto-3-deoxy-6-phosphogluconate aldolase	K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D      AArcS_1183 purU; Formyltetrahydrofolate hydrolase	K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C    00640 Propanoate metabolism [PATH:hara00640]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1012 acdAB; Acyl-CoA synthetase, ATP-grasp containing subunit	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_0958 Acetyl/propionyl-CoA carboxylase, alpha subunit	K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D      AArcS_0961 Acetyl-CoA carboxylase, carboxyltransferase component	K19312 pccB; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D      AArcS_0960 Uncharacterized protein	K22568 pccX; acetyl-CoA/propionyl-CoA carboxylase, PccX subunit [EC:6.4.1.2 6.4.1.3]
D      AArcS_0518 gabT; 4-aminobutyrate aminotransferase or related aminotransferase	K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D      AArcS_0977 gloA3; Lactoylglutathione lyase or related enzyme	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      AArcS_0912 sbm; Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)	K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D      AArcS_0922 sbm2; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_1052 sbm3; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_0856 sucC; Succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      AArcS_0857 sucD; Succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      AArcS_1870 mgsA; Methylglyoxal synthase	K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C    00650 Butanoate metabolism [PATH:hara00650]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0551 fadB; 3-hydroxyacyl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      AArcS_0671 phaC; Poly(3-hydroxyalkanoate) synthetase	K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D      AArcS_0670 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit	K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE
D      AArcS_1955 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_2372 sdhA2; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_1954 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-Sprotein subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      AArcS_1952 sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      AArcS_1953 sdhD; Succinate dehydrogenase, hydrophobic anchor subunit	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      AArcS_0518 gabT; 4-aminobutyrate aminotransferase or related aminotransferase	K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D      AArcS_0345 putA; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_2294 porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      AArcS_2293 porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      AArcS_0740 pksG; 3-hydroxy-3-methylglutaryl CoA synthase	K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D      AArcS_0610 adhP; Zn-dependent alcohol dehydrogenase	K18382 adh1; NAD+-dependent secondary alcohol dehydrogenase Adh1 [EC:1.1.1.-]
D      AArcS_0839 ilvB; Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      AArcS_0838 ilvH; Acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C    00660 C5-Branched dibasic acid metabolism [PATH:hara00660]
D      AArcS_0839 ilvB; Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      AArcS_0838 ilvH; Acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      AArcS_0856 sucC; Succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      AArcS_0857 sucD; Succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      AArcS_2169 leuA2; Isopropylmalate/homocitrate/citramalate synthase	K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D      AArcS_0835 leuC; Homoaconitate hydratase/3-isopropylmalate dehydratase large subunit family protein	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      AArcS_0834 leuD; 3-isopropylmalate dehydratase small subunit	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      AArcS_0829 leuB; Isocitrate/isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C    00562 Inositol phosphate metabolism [PATH:hara00562]
D      AArcS_0598 suhB; Archaeal fructose-1,6-bisphosphatase or related enzyme of inositol monophosphatase family	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      AArcS_1761 suhB2; Archaeal fructose-1,6-bisphosphatase or related enzyme of inositol monophosphatase family	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      AArcS_1392 tpiA; Triosephosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B  09102 Energy metabolism
C    00190 Oxidative phosphorylation [PATH:hara00190]
D      AArcS_2005 nuoA; NADH dehydrogenase subunit A	K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D      AArcS_2006 nuoB; F420H2 dehydrogenase subunit, related to NADH:ubiquinone oxidoreductase 20 kD subunit	K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D      AArcS_2007 nuoCD; NADH dehydrogenase subunit C/D	K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D      AArcS_2008 nuoH; NADH dehydrogenase subunit H	K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D      AArcS_2009 nuoI; NADH dehydrogenase subunit I	K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D      AArcS_2010 nuoJ; NADH dehydrogenase subunit J	K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D      AArcS_2011 nuoJ2; NADH dehydrogenase subunit J2	K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D      AArcS_2012 nuoK; NADH dehydrogenase subunit K	K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D      AArcS_2013 nuoL2; NADH dehydrogenase subunit L	K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D      AArcS_2014 nuoM3; NADH dehydrogenase subunit M	K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D      AArcS_2015 nuoN; NADH dehydrogenase subunit N	K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D      AArcS_1446 ndh; NADH dehydrogenase, FAD-containing subunit	K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D      AArcS_1923 ndh2; NADH dehydrogenase, FAD-containing subunit	K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D      AArcS_1955 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_2372 sdhA2; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_1954 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-Sprotein subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      AArcS_1952 sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      AArcS_1953 sdhD; Succinate dehydrogenase, hydrophobic anchor subunit	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      AArcS_0785 cyoE; Polyprenyltransferase (cytochrome oxidase assembly factor)	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      AArcS_0800 cyoC; Heme/copper-type cytochrome/quinol oxidase, subunit 3	K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D      AArcS_0796 cyoB; Heme/copper-type cytochrome/quinol oxidase, subunit 1	K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D      AArcS_0919 cyoB2; Heme/copper-type cytochrome/quinol oxidase, subunit 1 and 3	K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D      AArcS_0786 cyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2	K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D      AArcS_0795 cyoA2; Heme/copper-type cytochrome/quinol oxidase, subunit 2	K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D      AArcS_2395 ctaA; Uncharacterized protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      AArcS_0550 cydA; Cytochrome bd-type quinol oxidase, subunit 1	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      AArcS_0549 cydB; Cytochrome bd-type quinol oxidase, subunit 2	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      AArcS_2777 atpA; Archaeal/vacuolar-type H+-ATPase subunit A	K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D      AArcS_2778 atpB; Archaeal/vacuolar-type H+-ATPase subunit B	K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D      AArcS_2775 atpC; Archaeal/vacuolar-type H+-ATPase subunit C	K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D      AArcS_0432 atpD; Archaeal/vacuolar-type H+-ATPase subunit D	K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D      AArcS_2774 atpE; Archaeal/vacuolar-type H+-ATPase subunit E	K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D      AArcS_2776 atpF; Archaeal/vacuolar-type H+-ATPase subunit F	K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D      AArcS_2771 atpGH; Archaeal/vacuolar-type H+-ATPase subunit G/H	K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D      AArcS_2772 atpI; Archaeal/vacuolar-type H+-ATPase subunit I	K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D      AArcS_2773 atpK; Archaeal/vacuolar-type H+-ATPase subunit K	K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D      AArcS_2565 ppa; Inorganic pyrophosphatase	K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C    00195 Photosynthesis
C    00196 Photosynthesis - antenna proteins
C    00710 Carbon fixation by Calvin cycle [PATH:hara00710]
D      AArcS_1530 rbcL; Ribulose 1,5-bisphosphate carboxylase, large subunit	K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D      AArcS_0755 pgk; 3-phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      AArcS_0754 asd; Aspartate-semialdehyde dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      AArcS_0753 gapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D      AArcS_0062 fba; Fructose/tagatose bisphosphate aldolase	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_3089 rpiA; Ribose 5-phosphate isomerase	K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D      AArcS_1392 tpiA; Triosephosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D      AArcS_0273 ppc; Phosphoenolpyruvate carboxylase	K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D      AArcS_2397 sfcA; Malic enzyme	K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C    00720 Other carbon fixation pathways [PATH:hara00720]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_2045 ppsA; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      AArcS_0273 ppc; Phosphoenolpyruvate carboxylase	K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_1422 fumC; Fumarase	K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D      AArcS_1955 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_2372 sdhA2; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D      AArcS_1954 sdhB; Succinate dehydrogenase/fumarate reductase, Fe-Sprotein subunit	K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D      AArcS_1952 sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D      AArcS_1953 sdhD; Succinate dehydrogenase, hydrophobic anchor subunit	K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D      AArcS_0857 sucD; Succinyl-CoA synthetase, alpha subunit	K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D      AArcS_0856 sucC; Succinyl-CoA synthetase, beta subunit	K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D      AArcS_1940 fadB2; 3-hydroxyacyl-CoA dehydrogenase, some fused to Enoyl-CoA hydratase	K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_2294 porA2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D      AArcS_2293 porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D      AArcS_2830 icd; Isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      AArcS_2645 acnA; Aconitase A	K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D      AArcS_0977 gloA3; Lactoylglutathione lyase or related enzyme	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      AArcS_0922 sbm2; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_1052 sbm3; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_0912 sbm; Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)	K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D      AArcS_0945 folD; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C    00680 Methane metabolism [PATH:hara00680]
D      AArcS_1773 tdh2; Threonine dehydrogenase or related Zn-dependent dehydrogenase	K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D      AArcS_1771 yjgC; putative molibdopterin-dependent oxidoreductaseYjgC	K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D      AArcS_1253 glyA; Glycine/serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      AArcS_3098 gckA; Glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      AArcS_0273 ppc; Phosphoenolpyruvate carboxylase	K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_0062 fba; Fructose/tagatose bisphosphate aldolase	K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D      AArcS_2621 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acidsynthase, DhnA-aldolase family	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_1663 hypothetical protein	K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D      AArcS_1105 mch2; Methenyltetrahydromethanopterin cyclohydrolase	K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27]
D      AArcS_2106 frhB; Coenzyme F420-reducing hydrogenase, beta subunit	K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D      AArcS_2336 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase or related flavin-dependent oxidoreductase	K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D      AArcS_2045 ppsA; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D      AArcS_2847 gpmI; Phosphoglyceromutase	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      AArcS_0590 serA; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_2190 serA3; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3076 serA4; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3110 serA5; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3111 serB; Phosphoserine phosphatase	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D      AArcS_2531 thiH2; Thiamine biosynthesis enzyme ThiH, FO synthase or related uncharacterized enzyme	K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147]
D      AArcS_2530 thiH; Thiamine biosynthesis enzyme ThiH, FO synthase or related uncharacterized enzyme	K11780 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [EC:4.3.1.32]
D      AArcS_2544 2-phospho-L-lactate guanylyltransferase, coenzyme F420 biosynthesis enzyme, CobY/MobA/RfbA family	K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D      AArcS_1459 cofD; LPPG:FO 2-phospho-L-lactate transferase, F420 biosynthesis enzyme	K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D      AArcS_2337 cofE; F(420)-0:gamma-glutamyl ligase, F420 coenzyme biosynthesis enzyme	K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
D      AArcS_2636 mfnA; L-tyrosine decarboxylase, PLP-dependent protein	K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
C    00910 Nitrogen metabolism [PATH:hara00910]
D      AArcS_1064 narK; Nitrate/nitrite transporter	K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D      AArcS_3105 narK2; Nitrate/nitrite transporter	K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D      AArcS_1065 bisC3; Anaerobic dehydrogenase	K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D      AArcS_0344 cysI; Sulfite reductase, beta subunit (hemoprotein)	K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D      AArcS_2105 cysI3; Sulfite reductase, beta subunit (hemoprotein)	K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D      AArcS_2156 Hydroxylamine reductase, 6Fe-6S prismane cluster-containing protein	K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D      AArcS_1535 gdhA; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2018 gdhA2; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_2470 gltB; Glutamate synthase	K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D      AArcS_2761 cynT; Carbonic anhydrase	K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C    00920 Sulfur metabolism [PATH:hara00920]
D      AArcS_0634 tauB; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_2813 tauB2; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_2265 cysH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D      AArcS_0187 putative membrane protein, DoxD family	K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D      AArcS_0828 putative membrane protein, DoxD family	K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D      AArcS_2515 putative membrane protein, DoxD family	K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D      AArcS_0990 bisC2; Anaerobic dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      AArcS_0641 bisC; Anaerobic dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      AArcS_0085 sseA; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_0088 sseA2; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_0733 cysE; Serine acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D      AArcS_0881 cysK; Cysteine synthase	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      AArcS_0959 cysK2; Cysteine synthase	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      AArcS_0092 met2; Homoserine acetyltransferase	K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B  09103 Lipid metabolism
C    00061 Fatty acid biosynthesis [PATH:hara00061]
D      AArcS_0958 Acetyl/propionyl-CoA carboxylase, alpha subunit	K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D      AArcS_0672 fabG4; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2229 fabG10; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2489 faa1; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2490 faa12; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C    00062 Fatty acid elongation
C    00071 Fatty acid degradation [PATH:hara00071]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_0906 caiA5; Acyl-CoA dehydrogenase	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      AArcS_0762 caiA3; Acyl-CoA dehydrogenase	K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D      AArcS_2489 faa1; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2490 faa12; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00073 Cutin, suberine and wax biosynthesis
C    00100 Steroid biosynthesis [PATH:hara00100]
D      AArcS_0805 erg9; Phytoene/squalene synthetase	K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
C    00120 Primary bile acid biosynthesis
C    00121 Secondary bile acid biosynthesis
C    00140 Steroid hormone biosynthesis
C    00561 Glycerolipid metabolism [PATH:hara00561]
D      AArcS_3098 gckA; Glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_2212 dhaK; Dihydroxyacetone kinase	K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D      AArcS_2211 dhaL; Dihydroxyacetone kinase	K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D      AArcS_2210 dhaM; Phosphoenolpyruvate-protein phosphoryltransferase, PTS system IIA component	K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D      AArcS_1827 glpK; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_1828 glpK2; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_1833 glpK3; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_2086 celF; Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C    00564 Glycerophospholipid metabolism [PATH:hara00564]
D      AArcS_1834 glpA; BFD-like [2Fe-2S] binding domain of glycerol-3-phosphate dehydrogenase	K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D      AArcS_2763 glpA2; Glycerol-3-phosphate dehydrogenase	K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D      AArcS_1835 glpB; Anaerobic glycerol-3-phosphate dehydrogenase	K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D      AArcS_1836 glpC; Fe-S oxidoreductase	K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D      AArcS_0964 ugpQ; Glycerophosphoryl diester phosphodiesterase	K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D      AArcS_2508 Ethanolamine utilization protein EutA	K04019 eutA; ethanolamine utilization protein EutA
D      AArcS_2510 Ethanolamine ammonia lyase large subunit	K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D      AArcS_2509 Ethanolamine ammonia-lyase light chai	K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D      AArcS_0707 psd; Phosphatidylserine decarboxylase	K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D      AArcS_0051 pgsA; Phosphatidylglycerophosphate synthase	K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D      AArcS_2467 gldA; Glycerol dehydrogenase or related enzyme	K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D      AArcS_2630 pcrB; (S)-3-O-geranylgeranylglyceryl phosphate synthase, TIM-barrel fold	K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
D      AArcS_1854 ubiA; 4-hydroxybenzoate polyprenyltransferase or related prenyltransferase	K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
D      AArcS_0768 cdsA; CDP-diglyceride synthetase	K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
D      AArcS_2035 pssA; Phosphatidylserine synthase	K19665 pssA; archaetidylserine synthase [EC:2.7.8.38]
D      AArcS_1790 fixC3; Dehydrogenase (flavoprotein)	K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C    00565 Ether lipid metabolism
C    00600 Sphingolipid metabolism [PATH:hara00600]
D      AArcS_2086 celF; Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase	K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C    00590 Arachidonic acid metabolism
C    00591 Linoleic acid metabolism
C    00592 alpha-Linolenic acid metabolism [PATH:hara00592]
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    01040 Biosynthesis of unsaturated fatty acids
B
B  09104 Nucleotide metabolism
C    00230 Purine metabolism [PATH:hara00230]
D      AArcS_1164 NUDIX family hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D      AArcS_2650 NUDIX family hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D      AArcS_1443 manB3; Phosphomannomutase	K22199 ppm; phosphopentomutase [EC:5.4.2.7]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_3125 prsA; Phosphoribosylpyrophosphate synthetase	K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D      AArcS_1542 purF; Glutamine phosphoribosylpyrophosphate amidotransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      AArcS_0528 purD; Phosphoribosylamine-glycine ligase	K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D      AArcS_2303 purH; AICAR transformylase/IMP cyclohydrolase PurH	K01492 purNH; phosphoribosylglycinamide/phosphoribosylaminoimidazolecarboxamide formyltransferase [EC:2.1.2.2 2.1.2.3]
D      AArcS_0930 purL; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain	K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D      AArcS_1182 purS; Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component	K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D      AArcS_1181 purL2; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      AArcS_1553 purM; Phosphoribosylaminoimidazole (AIR) synthetase	K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D      AArcS_2003 purK; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)	K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D      AArcS_2004 purE; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase	K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D      AArcS_2532 purC; Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase	K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D      AArcS_2302 purB; Adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      AArcS_0010 purO; Archaeal IMP cyclohydrolase	K11176 purO; IMP cyclohydrolase [EC:3.5.4.10]
D      AArcS_0439 apt; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_0742 apt2; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_1888 apt3; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_2376 apt4; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_1986 surE; putative acid phosphatase	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      AArcS_1324 guaB; IMP dehydrogenase/GMP reductase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      AArcS_1056 ndk; Nucleoside diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      AArcS_2480 Inosine/xanthosine triphosphatase	K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D      AArcS_2512 rdgB; Inosine/xanthosine triphosphate pyrophosphatase,all-alpha NTP-PPase family	K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D      AArcS_0763 guaA; GMP synthase - Glutamine amidotransferase domain	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_1984 guaA2; GMP synthase - Glutamine amidotransferase domain	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_2978 guaA3; GMP synthase, PP-ATPase domain/subunit	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_1086 udp; Uridine phosphorylase	K26212 K26212; guanosine phosphorylase [EC:2.4.2.15]
D      AArcS_2932 nrdA; Ribonucleotide reductase, alpha subunit	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      AArcS_1762 5'-deoxynucleotidase, HD superfamily hydrolase	K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D      AArcS_1730 sua74; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D      AArcS_0876 cyaB; Adenylate cyclase, class 2 (thermophilic)	K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D      AArcS_0658 purA; Adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      AArcS_1364 deoA; Thymidine phosphorylase	K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D      AArcS_0726 adeC; Adenine deaminase	K01486 ade; adenine deaminase [EC:3.5.4.2]
D      AArcS_1484 ushA; 5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase	K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D      AArcS_1124 adk; Adenylate kinase or related kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      AArcS_1389 fap7; Broad-specificity NMP kinase	K18532 AK6; adenylate kinase [EC:2.7.4.3]
D      AArcS_2897 cpdA2; 3',5'-cyclic AMP phosphodiesterase CpdA	K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D      AArcS_2826 hit; HIT family hydrolase	K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D      AArcS_0575 ureC; Urea amidohydrolase (urease) alpha subunit	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      AArcS_0576 ureB; Urea amidohydrolase (urease) beta subunit	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      AArcS_0574 ureA; Urea amidohydrolase (urease) gamma subunit	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C    00240 Pyrimidine metabolism [PATH:hara00240]
D      AArcS_2959 carB; Carbamoylphosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      AArcS_2967 carA; Carbamoylphosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      AArcS_0979 pyrB; Aspartate carbamoyltransferase, catalytic chain	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      AArcS_0978 pyrI; Aspartate carbamoyltransferase, regulatory subunit	K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D      AArcS_0184 allB; Dihydroorotase or related cyclic amidohydrolase	K01465 URA4; dihydroorotase [EC:3.5.2.3]
D      AArcS_0198 pyrD; Dihydroorotate dehydrogenase	K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D      AArcS_0773 pyrE; Orotate phosphoribosyltransferase	K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D      AArcS_2688 pyrF; Orotidine-5'-phosphate decarboxylase	K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D      AArcS_3050 pyrH; Uridylate kinase	K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D      AArcS_1056 ndk; Nucleoside diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      AArcS_2979 pyrG; CTP synthase (UTP-ammonia lyase)	K01937 pyrG; CTP synthase [EC:6.3.4.2]
D      AArcS_1122 cmk; Cytidylate kinase	K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D      AArcS_1986 surE; putative acid phosphatase	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      AArcS_1445 udp2; Uridine phosphorylase	K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D      AArcS_3148 upp; Uracil phosphoribosyltransferase	K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D      AArcS_1484 ushA; 5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase	K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D      AArcS_1364 deoA; Thymidine phosphorylase	K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D      AArcS_1444 cdd; Cytidine deaminase	K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D      AArcS_1973 dcd; Deoxycytidine deaminase	K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D      AArcS_2932 nrdA; Ribonucleotide reductase, alpha subunit	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      AArcS_1762 5'-deoxynucleotidase, HD superfamily hydrolase	K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D      AArcS_2539 tmk2; Thymidylate kinase	K00943 tmk; dTMP kinase [EC:2.7.4.9]
D      AArcS_2126 dcd2; Deoxycytidine deaminase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      AArcS_0813 thy1; Thymidylate synthase	K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B  09105 Amino acid metabolism
C    00250 Alanine, aspartate and glutamate metabolism [PATH:hara00250]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2666 nadB; Aspartate oxidase	K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D      AArcS_2002 ansB; L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D      AArcS_2829 iaaA; Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily	K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D      AArcS_0909 asnB; Asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      AArcS_3099 proC3; Alanine dehydrogenase/(1)-pyrroline-2-carboxylate reductase ProC	K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
D      AArcS_3058 argG; Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      AArcS_3059 argH; Argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      AArcS_0658 purA; Adenylosuccinate synthase	K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D      AArcS_2302 purB; Adenylosuccinate lyase	K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D      AArcS_0979 pyrB; Aspartate carbamoyltransferase, catalytic chain	K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D      AArcS_0978 pyrI; Aspartate carbamoyltransferase, regulatory subunit	K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D      AArcS_0518 gabT; 4-aminobutyrate aminotransferase or related aminotransferase	K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D      AArcS_0345 putA; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      AArcS_1535 gdhA; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2018 gdhA2; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_2959 carB; Carbamoylphosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      AArcS_2967 carA; Carbamoylphosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      AArcS_1181 purL2; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      AArcS_0440 glmS; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_1819 glmS2; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_1542 purF; Glutamine phosphoribosylpyrophosphate amidotransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C    00260 Glycine, serine and threonine metabolism [PATH:hara00260]
D      AArcS_0008 ACT domain containing protein	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      AArcS_1465 asd2; Aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      AArcS_2794 thrA; Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      AArcS_2946 thrB; Homoserine kinase	K00872 thrB; homoserine kinase [EC:2.7.1.39]
D      AArcS_1343 thrC; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_2535 thrC2; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_3104 thrC3; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_0352 csdA2; Selenocysteine lyase/Cysteine desulfurase	K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D      AArcS_1253 glyA; Glycine/serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      AArcS_3098 gckA; Glycerate kinase	K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D      AArcS_2847 gpmI; Phosphoglyceromutase	K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D      AArcS_0590 serA; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_2190 serA3; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3076 serA4; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3110 serA5; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3111 serB; Phosphoserine phosphatase	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D      AArcS_0719 gcvP; Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      AArcS_0720 gcvP2; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      AArcS_0716 gcvT; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_3009 gcvT2; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0717 gcvH; Glycine cleavage system H protein (lipoate-binding)	K02437 gcvH; glycine cleavage system H protein
D      AArcS_2921 ilvA; Threonine dehydratase	K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D      AArcS_2620 trpA; Tryptophan synthase alpha chain	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      AArcS_0155 trpB; Tryptophan synthase beta chain	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      AArcS_2619 trpB2; Tryptophan synthase beta chain	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C    00270 Cysteine and methionine metabolism [PATH:hara00270]
D      AArcS_0733 cysE; Serine acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D      AArcS_0881 cysK; Cysteine synthase	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      AArcS_0959 cysK2; Cysteine synthase	K01738 cysK; cysteine synthase [EC:2.5.1.47]
D      AArcS_1499 metE; Methionine synthase II (cobalamin-independent)	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      AArcS_1500 metE2; Methionine synthase II (cobalamin-independent)	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      AArcS_0877 metK; Archaeal S-adenosylmethionine synthetase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      AArcS_0171 ssnA; Cytosine deaminase or related metal-dependent hydrolase	K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D      AArcS_0174 sam1; S-adenosylhomocysteine hydrolase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      AArcS_0008 ACT domain containing protein	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      AArcS_1465 asd2; Aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      AArcS_2794 thrA; Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      AArcS_0092 met2; Homoserine acetyltransferase	K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D      AArcS_0093 met17; O-acetylhomoserine sulfhydrylase	K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D      AArcS_1237 met172; O-acetylhomoserine sulfhydrylase	K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D      AArcS_0771 ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2122 ilvE2; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_0085 sseA; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_0088 sseA2; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_0140 mdh; Malate/lactate dehydrogenase	K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D      AArcS_0590 serA; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_2190 serA3; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3076 serA4; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3110 serA5; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C    00280 Valine, leucine and isoleucine degradation [PATH:hara00280]
D      AArcS_0771 ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2122 ilvE2; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0906 caiA5; Acyl-CoA dehydrogenase	K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_0958 Acetyl/propionyl-CoA carboxylase, alpha subunit	K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D      AArcS_0961 Acetyl-CoA carboxylase, carboxyltransferase component	K19312 pccB; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D      AArcS_0960 Uncharacterized protein	K22568 pccX; acetyl-CoA/propionyl-CoA carboxylase, PccX subunit [EC:6.4.1.2 6.4.1.3]
D      AArcS_0977 gloA3; Lactoylglutathione lyase or related enzyme	K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D      AArcS_0912 sbm; Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)	K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D      AArcS_0922 sbm2; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_1052 sbm3; Methylmalonyl-CoA mutase	K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0740 pksG; 3-hydroxy-3-methylglutaryl CoA synthase	K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C    00290 Valine, leucine and isoleucine biosynthesis [PATH:hara00290]
D      AArcS_2921 ilvA; Threonine dehydratase	K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D      AArcS_2169 leuA2; Isopropylmalate/homocitrate/citramalate synthase	K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D      AArcS_0835 leuC; Homoaconitate hydratase/3-isopropylmalate dehydratase large subunit family protein	K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D      AArcS_0834 leuD; 3-isopropylmalate dehydratase small subunit	K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D      AArcS_0829 leuB; Isocitrate/isopropylmalate dehydrogenase	K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D      AArcS_0839 ilvB; Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      AArcS_0838 ilvH; Acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      AArcS_0837 ilvC; Ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      AArcS_0283 ilvD; Dihydroxyacid dehydratase/phosphogluconate dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      AArcS_0771 ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2122 ilvE2; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_0840 leuA; Isopropylmalate/homocitrate/citramalate synthase	K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C    00300 Lysine biosynthesis [PATH:hara00300]
D      AArcS_2794 thrA; Homoserine dehydrogenase	K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D      AArcS_0008 ACT domain containing protein	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      AArcS_1465 asd2; Aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      AArcS_0226 dapA; Dihydrodipicolinate synthase/N-acetylneuraminatelyase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      AArcS_2462 dapA2; Dihydrodipicolinate synthase/N-acetylneuraminatelyase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      AArcS_2463 dapB; Dihydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D      AArcS_2464 dapD; Tetrahydrodipicolinate N-succinyltransferase	K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D      AArcS_2300 argE; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D      AArcS_2298 lysA; Diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D      AArcS_3060 lysW; Lysine biosynthesis protein LysW	K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D      AArcS_3063 argB; Acetylglutamate kinase	K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D      AArcS_3062 argC; Acetylglutamate semialdehyde dehydrogenase	K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D      AArcS_3064 argD; Ornithine/acetylornithine aminotransferase	K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D      AArcS_3065 argE2; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C    00310 Lysine degradation [PATH:hara00310]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0762 caiA3; Acyl-CoA dehydrogenase	K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0345 putA; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00220 Arginine biosynthesis [PATH:hara00220]
D      AArcS_3066 argF; Ornithine carbamoyltransferase	K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D      AArcS_3058 argG; Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      AArcS_3059 argH; Argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      AArcS_1449 speB4; Arginase family enzyme	K01476 rocF; arginase [EC:3.5.3.1]
D      AArcS_0575 ureC; Urea amidohydrolase (urease) alpha subunit	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      AArcS_0576 ureB; Urea amidohydrolase (urease) beta subunit	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      AArcS_0574 ureA; Urea amidohydrolase (urease) gamma subunit	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D      AArcS_0612 Nitric oxide synthase, oxygenase domain	K00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47]
D      AArcS_1181 purL2; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_2959 carB; Carbamoylphosphate synthase large subunit	K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D      AArcS_2967 carA; Carbamoylphosphate synthase small subunit	K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D      AArcS_1535 gdhA; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2018 gdhA2; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_3060 lysW; Lysine biosynthesis protein LysW	K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D      AArcS_3061 rimK3; Glutathione synthase/glutaminyl transferase/alpha-L-glutamate ligase	K19412 argX; glutamate---[amino group carrier protein] ligase [EC:6.3.2.60]
D      AArcS_3063 argB; Acetylglutamate kinase	K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D      AArcS_3062 argC; Acetylglutamate semialdehyde dehydrogenase	K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D      AArcS_3064 argD; Ornithine/acetylornithine aminotransferase	K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D      AArcS_3065 argE2; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C    00330 Arginine and proline metabolism [PATH:hara00330]
D      AArcS_1270 arfB; Creatinine amidohydrolase/Fe(II)-dependent formamide hydrolase involved in riboflavin and F420 biosynthesis	K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D      AArcS_0497 hyuA; N-methylhydantoinase A/acetone carboxylase, betasubunit	K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D      AArcS_0496 hyuB; N-methylhydantoinase B/acetone carboxylase, alpha subunit	K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D      AArcS_0426 pdaD; Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)	K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D      AArcS_0562 speB2; Arginase family enzyme	K01480 speB; agmatinase [EC:3.5.3.11]
D      AArcS_0563 speB3; Arginase family enzyme	K01480 speB; agmatinase [EC:3.5.3.11]
D      AArcS_2345 speB5; Arginase family enzyme	K01480 speB; agmatinase [EC:3.5.3.11]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_1856 fmdA3; Acetamidase/formamidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      AArcS_0612 Nitric oxide synthase, oxygenase domain	K00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47]
D      AArcS_1449 speB4; Arginase family enzyme	K01476 rocF; arginase [EC:3.5.3.1]
D      AArcS_0931 proC2; Pyrroline-5-carboxylate reductase	K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D      AArcS_0769 putA2; Proline dehydrogenase	K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D      AArcS_0932 proB; Glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      AArcS_0933 proA; Gamma-glutamyl phosphate reductase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C    00340 Histidine metabolism [PATH:hara00340]
D      AArcS_0169 hisG; ATP phosphoribosyltransferase	K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D      AArcS_2392 hisI; Phosphoribosyl-ATP pyrophosphohydrolase	K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D      AArcS_3163 hisI2; Phosphoribosyl-AMP cyclohydrolase	K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D      AArcS_3155 hisA; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase	K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D      AArcS_2394 hisH; Glutamine amidotransferase	K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D      AArcS_1399 hisF; Imidazoleglycerol-phosphate synthase	K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D      AArcS_3154 hisB; Imidazoleglycerol-phosphate dehydratase	K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      AArcS_1476 hisD; Histidinol dehydrogenase	K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00350 Tyrosine metabolism [PATH:hara00350]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      AArcS_2636 mfnA; L-tyrosine decarboxylase, PLP-dependent protein	K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D      AArcS_0345 putA; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C    00360 Phenylalanine metabolism [PATH:hara00360]
D      AArcS_1469 caiD2; Enoyl-CoA hydratase/carnithine racemase	K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D      AArcS_0551 fadB; 3-hydroxyacyl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      AArcS_0730 katG; Catalase (peroxidase I)	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D      AArcS_1856 fmdA3; Acetamidase/formamidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C    00380 Tryptophan metabolism [PATH:hara00380]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0762 caiA3; Acyl-CoA dehydrogenase	K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_1856 fmdA3; Acetamidase/formamidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      AArcS_0730 katG; Catalase (peroxidase I)	K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C    00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:hara00400]
D      AArcS_2621 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acidsynthase, DhnA-aldolase family	K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D      AArcS_2624 3-dehydroquinate synthase	K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24]
D      AArcS_2626 aroD; 3-dehydroquinate dehydratase	K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D      AArcS_2118 aroE; Shikimate 5-dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D      AArcS_0588 aroK2; Archaeal shikimate kinase	K00891 aroK; shikimate kinase [EC:2.7.1.71]
D      AArcS_2075 aroA; 5-enolpyruvylshikimate-3-phosphate synthase	K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D      AArcS_2481 aroC; Chorismate synthase	K01736 aroC; chorismate synthase [EC:4.2.3.5]
D      AArcS_2120 trpE; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2935 trpE2; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2121 pabA; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      AArcS_2934 pabA2; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      AArcS_2838 trpD; Anthranilate phosphoribosyltransferase	K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D      AArcS_2937 trpD2; Anthranilate phosphoribosyltransferase	K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D      AArcS_2936 trpF; Phosphoribosylanthranilate isomerase	K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D      AArcS_2618 trpC; Indole-3-glycerol phosphate synthase	K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D      AArcS_2620 trpA; Tryptophan synthase alpha chain	K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D      AArcS_0155 trpB; Tryptophan synthase beta chain	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      AArcS_2619 trpB2; Tryptophan synthase beta chain	K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D      AArcS_0587 pheA2; Chorismate mutase	K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D      AArcS_2629 tyrA; Prephenate dehydrogenase	K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D      AArcS_0305 pheA; Prephenate dehydratase	K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B  09106 Metabolism of other amino acids
C    00410 beta-Alanine metabolism [PATH:hara00410]
D      AArcS_2636 mfnA; L-tyrosine decarboxylase, PLP-dependent protein	K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D      AArcS_0518 gabT; 4-aminobutyrate aminotransferase or related aminotransferase	K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_1964 Phosphopantothenate synthetase	K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
C    00430 Taurine and hypotaurine metabolism [PATH:hara00430]
D      AArcS_0984 ggt; Gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      AArcS_3099 proC3; Alanine dehydrogenase/(1)-pyrroline-2-carboxylate reductase ProC	K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
C    00440 Phosphonate and phosphinate metabolism
D      AArcS_2504 Metal-dependent hydrolase of the beta-lactamase superfamily	K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C    00450 Selenocompound metabolism [PATH:hara00450]
D      AArcS_1499 metE; Methionine synthase II (cobalamin-independent)	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      AArcS_1500 metE2; Methionine synthase II (cobalamin-independent)	K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D      AArcS_0213 csdA; Selenocysteine lyase/Cysteine desulfurase	K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D      AArcS_1495 trxB3; Thioredoxin reductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      AArcS_1759 trxB4; Thioredoxin reductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      AArcS_1335 trxB2; Thioredoxin reductase	K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D      AArcS_2640 metG; Methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C    00460 Cyanoamino acid metabolism [PATH:hara00460]
D      AArcS_2185 bglX; Bifunctional b-D-xylosidase/a-L-arabinosidase orrelated glycosidase	K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D      AArcS_0984 ggt; Gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      AArcS_2002 ansB; L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D      AArcS_2829 iaaA; Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily	K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D      AArcS_1253 glyA; Glycine/serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C    00470 D-Amino acid metabolism [PATH:hara00470]
D      AArcS_1181 purL2; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain	K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D      AArcS_2788 NAD dependent epimerase/dehydratase family	K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312]
D      AArcS_2787 rspA5; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D      AArcS_2298 lysA; Diaminopimelate decarboxylase	K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C    00480 Glutathione metabolism [PATH:hara00480]
D      AArcS_0984 ggt; Gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D      AArcS_1005 Glutamate-cysteine ligase family 2(GCS2)	K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D      AArcS_2151 Bis-gamma-glutamylcystine reductase	K03423 E1.8.1.13; bis-gamma-glutamylcystine reductase [EC:1.8.1.13]
D      AArcS_2830 icd; Isocitrate dehydrogenase	K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D      AArcS_2138 gnd; putative 6-phosphogluconate dehydrogenase	K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
B
B  09107 Glycan biosynthesis and metabolism
C    00510 N-Glycan biosynthesis
C    00513 Various types of N-glycan biosynthesis
C    00512 Mucin type O-glycan biosynthesis
C    00515 Mannose type O-glycan biosynthesis
C    00514 Other types of O-glycan biosynthesis
C    00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C    00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C    00533 Glycosaminoglycan biosynthesis - keratan sulfate
C    00531 Glycosaminoglycan degradation
C    00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C    00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C    00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C    00604 Glycosphingolipid biosynthesis - ganglio series
C    00511 Other glycan degradation
C    00540 Lipopolysaccharide biosynthesis
C    00542 O-Antigen repeat unit biosynthesis
C    00541 O-Antigen nucleotide sugar biosynthesis
C    00550 Peptidoglycan biosynthesis
C    00552 Teichoic acid biosynthesis
C    00571 Lipoarabinomannan (LAM) biosynthesis
C    00572 Arabinogalactan biosynthesis - Mycobacterium
C    00543 Exopolysaccharide biosynthesis [PATH:hara00543]
D      AArcS_0733 cysE; Serine acetyltransferase	K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B  09108 Metabolism of cofactors and vitamins
C    00730 Thiamine metabolism [PATH:hara00730]
D      AArcS_2159 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D      AArcS_1857 thiI; tRNA S(4)U 4-thiouridine synthase	K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D      AArcS_1966 thi4; Archaeal ribulose 1,5-bisphosphate synthetase	K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D      AArcS_1337 thiM; Hydroxyethylthiazole kinase, sugar kinase family	K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D      AArcS_1336 thiE; Thiamine monophosphate synthase	K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D      AArcS_3045 thiL; Thiamine monophosphate kinase	K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D      AArcS_1124 adk; Adenylate kinase or related kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      AArcS_2610 tenA; Transcriptional activator TenA	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D      AArcS_2611 tenA2; Transcriptional activator TenA	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C    00740 Riboflavin metabolism [PATH:hara00740]
D      AArcS_0056 gch31; Archaeal GTP cyclohydrolase III	K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29]
D      AArcS_1434 gch312; Archaeal GTP cyclohydrolase III	K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29]
D      AArcS_1491 ribD; Pyrimidine reductase, riboflavin biosynthesis	K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D      AArcS_0243 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase	K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D      AArcS_1930 ribH; Riboflavin synthase beta-chain	K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D      AArcS_2670 ribC; Riboflavin synthase alpha chain	K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D      AArcS_0242 CTP-dependent Riboflavin kinase	K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161]
D      AArcS_1926 tagD; Cytidylyltransferase fused to conserved domain of DUF357 family	K14656 ribL; FAD synthetase [EC:2.7.7.2]
D      AArcS_1337 thiM; Hydroxyethylthiazole kinase, sugar kinase family	K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D      AArcS_1164 NUDIX family hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D      AArcS_2650 NUDIX family hydrolase	K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C    00750 Vitamin B6 metabolism [PATH:hara00750]
D      AArcS_1206 tas3; Aryl-alcohol dehydrogenase related enzyme	K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D      AArcS_1209 tas4; Aryl-alcohol dehydrogenase related enzyme	K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D      AArcS_1343 thrC; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_2535 thrC2; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_3104 thrC3; Threonine synthase and cysteate synthase	K01733 thrC; threonine synthase [EC:4.2.3.1]
D      AArcS_2730 snz1; Pyridoxine biosynthesis enzyme	K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D      AArcS_2390 pdx2; putative glutamine amidotransferase involved inpyridoxine biosynthesis	K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C    00760 Nicotinate and nicotinamide metabolism [PATH:hara00760]
D      AArcS_2666 nadB; Aspartate oxidase	K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D      AArcS_2667 nadA; Quinolinate synthase	K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D      AArcS_2665 nadC; Nicotinate-nucleotide pyrophosphorylase	K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D      AArcS_3035 pncB; Nicotinic acid phosphoribosyltransferase	K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D      AArcS_1986 surE; putative acid phosphatase	K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D      AArcS_2613 nadR; Nicotinamide mononucleotide adenylyltransferase	K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D      AArcS_0042 nadE; NH3-dependent NAD+ synthetase	K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D      AArcS_0430 nadE2; NH3-dependent NAD+ synthetase	K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D      AArcS_2584 cinA3; CinA3	K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D      AArcS_0235 sir2; NAD-dependent protein deacetylase, SIR2 family	K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D      AArcS_1906 nadF; NAD kinase	K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D      AArcS_2866 nadF2; NAD kinase	K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D      AArcS_0039 ald; Alanine dehydrogenase	K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D      AArcS_0040 NAD(P) transhydrogenase alpha subunit	K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D      AArcS_0041 pntB; NAD(P) transhydrogenase beta subunit	K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D      AArcS_0345 putA; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C    00770 Pantothenate and CoA biosynthesis [PATH:hara00770]
D      AArcS_0839 ilvB; Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme	K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D      AArcS_0838 ilvH; Acetolactate synthase, small subunit	K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D      AArcS_0837 ilvC; Ketol-acid reductoisomerase	K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D      AArcS_0283 ilvD; Dihydroxyacid dehydratase/phosphogluconate dehydratase	K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D      AArcS_0995 panB; Ketopantoate hydroxymethyltransferase	K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D      AArcS_0103 apbA; Ketopantoate reductase	K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D      AArcS_2044 Pantoate kinase	K06982 pok; pantoate kinase [EC:2.7.1.169]
D      AArcS_1964 Phosphopantothenate synthetase	K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
D      AArcS_1901 dfp; Phosphopantothenoylcysteine synthetase/decarboxylase	K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D      AArcS_1003 cAB4; Phosphopantetheine adenylyltransferase	K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D      AArcS_2496 DUF359 family	K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237]
D      AArcS_0771 ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2122 ilvE2; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2636 mfnA; L-tyrosine decarboxylase, PLP-dependent protein	K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C    00780 Biotin metabolism [PATH:hara00780]
D      AArcS_0672 fabG4; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2229 fabG10; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2415 bioF; 7-keto-8-aminopelargonate synthetase or related enzyme	K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D      AArcS_2414 bioB; Biotin synthase or related enzyme	K01012 bioB; biotin synthase [EC:2.8.1.6]
D      AArcS_1378 csa3; CRISPR-Cas assicated transcriptional regulator, contains CARF and HTH domain	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C    00785 Lipoic acid metabolism [PATH:hara00785]
D      AArcS_0208 lipA; Lipoate synthase	K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D      AArcS_0182 lplA; Lipoate-protein ligase A	K16869 lipL; octanoyl-[GcvH]:protein N-octanoyltransferase [EC:2.3.1.204]
D      AArcS_2258 lplA2; Lipoate-protein ligase A	K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_0312 acoA; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0434 acoA2; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D      AArcS_0311 acoB; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component	K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D      AArcS_0310 aceF; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme	K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D      AArcS_0719 gcvP; Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D      AArcS_0720 gcvP2; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D      AArcS_0716 gcvT; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_3009 gcvT2; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_0717 gcvH; Glycine cleavage system H protein (lipoate-binding)	K02437 gcvH; glycine cleavage system H protein
C    00790 Folate biosynthesis [PATH:hara00790]
D      AArcS_1414 folC; Folylpolyglutamate synthase and Dihydropteroate synthase	K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D      AArcS_2643 folC2; Folylpolyglutamate synthase and Dihydropteroate synthase	K24102 folCP; dihydrofolate synthase / dihydropteroate synthase [EC:6.3.2.12 2.5.1.15]
D      AArcS_0050 queD; 6-pyruvoyl-tetrahydropterin synthase	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      AArcS_1617 queD2; 6-pyruvoyl-tetrahydropterin synthase	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      AArcS_2704 phhB; Pterin-4a-carbinolamine dehydratase	K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D      AArcS_1618 nrdG; Organic radical activating enzyme	K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D      AArcS_1619 queC; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      AArcS_1992 queC2; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      AArcS_2867 mptA; Fe(2+)-dependent GTP cyclohydrolase	K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39]
D      AArcS_2738 Uncharacterized protein	K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25]
D      AArcS_1413 putative Rossmann fold enzyme	K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D      AArcS_0282 putative sugar kinase	K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54]
D      AArcS_0646 moaA; Molybdenum cofactor biosynthesis enzyme	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      AArcS_1767 moaC; Molybdenum cofactor biosynthesis enzyme	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      AArcS_3048 moaE; Molybdopterin converting factor, large subunit	K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D      AArcS_0401 moaB; Molybdopterin biosynthesis enzyme	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      AArcS_2975 moaB2; Molybdopterin biosynthesis enzyme	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      AArcS_2700 moeA; Molybdopterin biosynthesis enzyme	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      AArcS_2701 moeA2; Molybdopterin biosynthesis enzyme	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D      AArcS_1769 mobA; Molybdopterin-guanine dinucleotide biosynthesis protein A	K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C    00670 One carbon pool by folate [PATH:hara00670]
D      AArcS_0945 folD; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D      AArcS_1253 glyA; Glycine/serine hydroxymethyltransferase	K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D      AArcS_2303 purH; AICAR transformylase/IMP cyclohydrolase PurH	K01492 purNH; phosphoribosylglycinamide/phosphoribosylaminoimidazolecarboxamide formyltransferase [EC:2.1.2.2 2.1.2.3]
D      AArcS_0483 purN; Folate-dependent phosphoribosylglycinamide formyltransferase PurN	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      AArcS_0716 gcvT; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_3009 gcvT2; Glycine cleavage system T protein (aminomethyltransferase)	K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D      AArcS_0813 thy1; Thymidylate synthase	K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D      AArcS_1183 purU; Formyltetrahydrofolate hydrolase	K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D      AArcS_2129 fau1; 5-formyltetrahydrofolate cyclo-ligase	K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C    00830 Retinol metabolism
C    00860 Porphyrin metabolism [PATH:hara00860]
D      AArcS_1327 glnS; Glutamyl-or glutaminyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      AArcS_0556 hemA; Glutamyl-tRNA reductase	K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D      AArcS_2705 hemA2; Glutamyl-tRNA reductase	K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D      AArcS_3142 hemL; Glutamate-1-semialdehyde aminotransferase	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      AArcS_3117 hemB; Delta-aminolevulinic acid dehydratase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      AArcS_3139 hemC; Porphobilinogen deaminase	K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D      AArcS_3137 hemD; Uroporphyrinogen-III synthase	K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D      AArcS_0238 hemG; Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain)	K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D      AArcS_0406 ywfI; Chlorite dismutase	K25033 chdC; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D      AArcS_3138 cysG2; Uroporphyrinogen-III methylase	K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D      AArcS_2706 cysG; Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)	K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D      AArcS_1969 DNA-binding transcriptional regulator, Lrp family	K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D      AArcS_2707 DNA-binding transcriptional regulator, Lrp family	K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D      AArcS_2837 DNA-binding transcriptional regulator, Lrp family	K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D      AArcS_1230 Radical SAM superfamily enzyme	K22226 ahbC; Fe-coproporphyrin III synthase
D      AArcS_1228 Radical SAM superfamily enzyme	K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D      AArcS_1968 Radical SAM superfamily enzyme	K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D      AArcS_0785 cyoE; Polyprenyltransferase (cytochrome oxidase assembly factor)	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      AArcS_2395 ctaA; Uncharacterized protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      AArcS_0654 Sirohydrochlorin ferrochelatase	K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D      AArcS_1195 Sirohydrochlorin iron chelatase fused to [2Fe-2S] Ferredoxin	K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D      AArcS_1188 cobF; Precorrin-2 methylase	K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D      AArcS_1191 cobJ; Precorrin-3B methylase	K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D      AArcS_1192 cobJ2; Precorrin-3B methylase	K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D      AArcS_1189 cobM; Precorrin-4 methylase	K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D      AArcS_1190 cbiG; Cobalamin biosynthesis protein CbiG	K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D      AArcS_1187 cobL; Precorrin-6B methylase 2	K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D      AArcS_1201 cobL2; Precorrin-6B methylase 1	K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D      AArcS_2282 cobL3; Precorrin-6B methylase 1	K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D      AArcS_1200 cobH; Precorrin isomerase	K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D      AArcS_2283 cobB; Cobyrinic acid a,c-diamide synthase	K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D      AArcS_1199 cobN; Cobalamin biosynthesis protein CobN or related Mg-chelatase	K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D      AArcS_0725 pduO; Cob(I)alamin adenosyltransferase	K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      AArcS_2284 btuR; ATP:corrinoid adenosyltransferase	K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      AArcS_2285 cobQ; Cobyric acid synthase	K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D      AArcS_2270 cbiB; Cobalamin biosynthesis protein CobD/CbiB	K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D      AArcS_2275 cbiZ; Adenosylcobinamide amidohydrolase	K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D      AArcS_2272 GTP:adenosylcobinamide-phosphate guanylyltransferase	K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62]
D      AArcS_2271 cobS; Cobalamin-5-phosphate synthase	K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D      AArcS_2274 hisC2; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D      AArcS_1198 AAA family ATPase	K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
C    00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:hara00130]
D      AArcS_1034 menF; Menaquinone-specific isochorismate synthase	K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D      AArcS_1035 menD; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carbox ylate synthase	K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D      AArcS_1041 rspA; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D      AArcS_1042 caiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II	K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D      AArcS_1039 menB; Dihydroxynaphthoic acid synthase	K01661 menB; naphthoate synthase [EC:4.1.3.36]
D      AArcS_1040 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase	K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B  09109 Metabolism of terpenoids and polyketides
C    00900 Terpenoid backbone biosynthesis [PATH:hara00900]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0740 pksG; 3-hydroxy-3-methylglutaryl CoA synthase	K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D      AArcS_3008 hmg1; Hydroxymethylglutaryl-CoA reductase	K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D      AArcS_1352 erg12; Mevalonate kinase	K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D      AArcS_1922 mvd1; Mevalonate pyrophosphate decarboxylase	K17942 pmd; phosphomevalonate decarboxylase [EC:4.1.1.99]
D      AArcS_1353 Isopentenyl phosphate kinase, enzyme of modifiedmevalonate pathway	K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26]
D      AArcS_2242 lldD; FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D      AArcS_2969 idi; Isopentenyldiphosphate isomerase	K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D      AArcS_1359 ispA; Geranylgeranyl pyrophosphate synthase	K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      AArcS_3037 ispA3; Geranylgeranyl pyrophosphate synthase	K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      AArcS_1905 ispA2; Geranylgeranyl pyrophosphate synthase	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      AArcS_2711 uppS2; Undecaprenyl pyrophosphate synthase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      AArcS_0442 uppS; Undecaprenyl pyrophosphate synthase	K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89]
C    00902 Monoterpenoid biosynthesis
C    00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:hara00909]
D      AArcS_0805 erg9; Phytoene/squalene synthetase	K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
C    00904 Diterpenoid biosynthesis
C    00906 Carotenoid biosynthesis [PATH:hara00906]
D      AArcS_2865 erg92; Phytoene/squalene synthetase	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      AArcS_2863 ubiA2; 4-hydroxybenzoate polyprenyltransferase or related prenyltransferase	K20616 lyeJ; lycopene elongase/hydratase (dihydrobisanhydrobacterioruberin-forming) [EC:2.5.1.150]
D      AArcS_2785 Phytoene dehydrogenase or related enzyme	K20611 crtD; 1-hydroxy-2-isopentenylcarotenoid 3,4-desaturase [EC:1.3.99.37]
D      AArcS_2862 Phytoene dehydrogenase or related enzyme	K20611 crtD; 1-hydroxy-2-isopentenylcarotenoid 3,4-desaturase [EC:1.3.99.37]
D      AArcS_2864 Uncharacterized membrane protein YcaP, DUF422 family	K08977 cruF; bisanhydrobacterioruberin hydratase [EC:4.2.1.161]
D      AArcS_2590 Lycopene cyclase family protein	K22502 crtY; lycopene beta-cyclase [EC:5.5.1.19]
C    00905 Brassinosteroid biosynthesis
C    00981 Insect hormone biosynthesis
C    00908 Zeatin biosynthesis
C    00903 Limonene degradation
C    00907 Pinene, camphor and geraniol degradation [PATH:hara00907]
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    01052 Type I polyketide structures
C    00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C    01051 Biosynthesis of ansamycins
C    01059 Biosynthesis of enediyne antibiotics
C    01056 Biosynthesis of type II polyketide backbone
C    01057 Biosynthesis of type II polyketide products
D      AArcS_0362 putative O-methyltransferase YrrM	K19569 elmMIII; 8-demethyl-8-(2,3-dimethoxy-alpha-L-rhamnosyl)tetracenomycin-C 4'-O-methyltransferase [EC:2.1.1.307]
C    00253 Tetracycline biosynthesis
C    00523 Polyketide sugar unit biosynthesis
D      AArcS_0441 gcd1-1; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0494 aglF; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0495 aglF2; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0617 gcd1-3; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0504 gcd1-2; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D      AArcS_0848 gcd1-4; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C    01054 Nonribosomal peptide structures
C    01053 Biosynthesis of siderophore group nonribosomal peptides
D      AArcS_1034 menF; Menaquinone-specific isochorismate synthase	K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C    01055 Biosynthesis of vancomycin group antibiotics
B
B  09110 Biosynthesis of other secondary metabolites
C    00940 Phenylpropanoid biosynthesis
C    00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C    00941 Flavonoid biosynthesis
C    00944 Flavone and flavonol biosynthesis
C    00942 Anthocyanin biosynthesis
C    00943 Isoflavonoid biosynthesis
C    00946 Degradation of flavonoids [PATH:hara00946]
D      AArcS_2185 bglX; Bifunctional b-D-xylosidase/a-L-arabinosidase orrelated glycosidase	K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C    00901 Indole alkaloid biosynthesis
C    00403 Indole diterpene alkaloid biosynthesis
C    00950 Isoquinoline alkaloid biosynthesis
C    00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C    00996 Biosynthesis of various alkaloids
C    00232 Caffeine metabolism
C    00965 Betalain biosynthesis
C    00966 Glucosinolate biosynthesis
C    00402 Benzoxazinoid biosynthesis
C    00311 Penicillin and cephalosporin biosynthesis
D      AArcS_2941 pvdQ; Acyl-homoserine lactone (AHL) acylase PvdQ	K01434 pac; penicillin G amidase [EC:3.5.1.11]
C    00332 Carbapenem biosynthesis [PATH:hara00332]
D      AArcS_0932 proB; Glutamate 5-kinase	K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D      AArcS_0933 proA; Gamma-glutamyl phosphate reductase	K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C    00261 Monobactam biosynthesis [PATH:hara00261]
D      AArcS_0008 ACT domain containing protein	K00928 lysC; aspartate kinase [EC:2.7.2.4]
D      AArcS_1465 asd2; Aspartate-semialdehyde dehydrogenase	K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D      AArcS_0226 dapA; Dihydrodipicolinate synthase/N-acetylneuraminatelyase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      AArcS_2462 dapA2; Dihydrodipicolinate synthase/N-acetylneuraminatelyase	K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D      AArcS_2463 dapB; Dihydrodipicolinate reductase	K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C    00331 Clavulanic acid biosynthesis
C    00521 Streptomycin biosynthesis [PATH:hara00521]
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
D      AArcS_3165 manB4; Phosphomannomutase	K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D      AArcS_0598 suhB; Archaeal fructose-1,6-bisphosphatase or related enzyme of inositol monophosphatase family	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      AArcS_1761 suhB2; Archaeal fructose-1,6-bisphosphatase or related enzyme of inositol monophosphatase family	K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D      AArcS_0441 gcd1-1; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0494 aglF; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0495 aglF2; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0617 gcd1-3; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0504 gcd1-2; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D      AArcS_0848 gcd1-4; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C    00524 Neomycin, kanamycin and gentamicin biosynthesis
D      AArcS_2357 glk; Glucokinase	K25026 glk; glucokinase [EC:2.7.1.2]
C    00525 Acarbose and validamycin biosynthesis
D      AArcS_0441 gcd1-1; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0494 aglF; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0495 aglF2; Glucose-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0617 gcd1-3; N-acetylglucosamine-1-phosphate uridyltransferase	K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D      AArcS_0504 gcd1-2; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D      AArcS_0848 gcd1-4; N-acetylglucosamine-1-phosphate uridyltransferase	K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C    00401 Novobiocin biosynthesis [PATH:hara00401]
D      AArcS_2629 tyrA; Prephenate dehydrogenase	K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C    00404 Staurosporine biosynthesis
C    00405 Phenazine biosynthesis
D      AArcS_2120 trpE; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2935 trpE2; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2121 pabA; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      AArcS_2934 pabA2; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C    00333 Prodigiosin biosynthesis
D      AArcS_0672 fabG4; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2229 fabG10; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C    00254 Aflatoxin biosynthesis
C    00998 Biosynthesis of various antibiotics
C    00999 Biosynthesis of various plant secondary metabolites [PATH:hara00999]
D      AArcS_0877 metK; Archaeal S-adenosylmethionine synthetase	K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D      AArcS_2118 aroE; Shikimate 5-dehydrogenase	K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D      AArcS_2185 bglX; Bifunctional b-D-xylosidase/a-L-arabinosidase orrelated glycosidase	K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C    00997 Biosynthesis of various other secondary metabolites
B
B  09111 Xenobiotics biodegradation and metabolism
C    00362 Benzoate degradation [PATH:hara00362]
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_0762 caiA3; Acyl-CoA dehydrogenase	K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D      AArcS_0551 fadB; 3-hydroxyacyl-CoA dehydrogenase	K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C    00627 Aminobenzoate degradation [PATH:hara00627]
D      AArcS_1856 fmdA3; Acetamidase/formamidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D      AArcS_1765 acyP; Acylphosphatase	K01512 acyP; acylphosphatase [EC:3.6.1.7]
C    00364 Fluorobenzoate degradation
C    00625 Chloroalkane and chloroalkene degradation [PATH:hara00625]
D      AArcS_2069 putA3; Lactaldehyde dehydrogenase, Succinate semialdehyde dehydrogenase or other NAD-dependent aldehyde dehydrogenase	K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D      AArcS_1773 tdh2; Threonine dehydrogenase or related Zn-dependent dehydrogenase	K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
C    00361 Chlorocyclohexane and chlorobenzene degradation
C    00623 Toluene degradation
C    00622 Xylene degradation
C    00633 Nitrotoluene degradation
D      AArcS_1987 porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma	K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D      AArcS_1988 porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
C    00642 Ethylbenzene degradation
D      AArcS_0916 paaJ2; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D      AArcS_2507 paaJ4; Acetyl-CoA acetyltransferase	K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C    00643 Styrene degradation [PATH:hara00643]
D      AArcS_1856 fmdA3; Acetamidase/formamidase	K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C    00791 Atrazine degradation
D      AArcS_0575 ureC; Urea amidohydrolase (urease) alpha subunit	K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D      AArcS_0576 ureB; Urea amidohydrolase (urease) beta subunit	K01429 ureB; urease subunit beta [EC:3.5.1.5]
D      AArcS_0574 ureA; Urea amidohydrolase (urease) gamma subunit	K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C    00930 Caprolactam degradation
C    00363 Bisphenol degradation
C    00621 Dioxin degradation
C    00626 Naphthalene degradation
C    00624 Polycyclic aromatic hydrocarbon degradation
C    00365 Furfural degradation
C    00984 Steroid degradation
C    00980 Metabolism of xenobiotics by cytochrome P450
C    00982 Drug metabolism - cytochrome P450
C    00983 Drug metabolism - other enzymes
B
B  09112 Not included in regular maps
C    09113 Global maps only
#
A09120 Genetic Information Processing
B
B  09121 Transcription
C    03020 RNA polymerase [PATH:hara03020]
D      AArcS_2855 rpoB; DNA-directed RNA polymerase subunit B'	K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D      AArcS_2854 rpoB2; DNA-directed RNA polymerase subunit B''	K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D      AArcS_2856 rpoA; DNA-directed RNA polymerase subunit A'	K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D      AArcS_2857 rpoA2; DNA-directed RNA polymerase subunit A''	K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D      AArcS_0681 rpoD; DNA-directed RNA polymerase subunit D	K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D      AArcS_1396 rpb11; DNA-directed RNA polymerase, subunit L	K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D      AArcS_2498 rpb7; DNA-directed RNA polymerase, subunit E'/Rpb7	K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D      AArcS_1505 rpo4; DNA-directed RNA polymerase, subunit Rpo4/RpoF	K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D      AArcS_2853 rpb5; DNA-directed RNA polymerase, subunit H, RpoH/RPB5	K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D      AArcS_0675 rpoK; DNA-directed RNA polymerase subunit K/omega	K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
C    03022 Basal transcription factors [PATH:hara03022]
D      AArcS_0072 sua7; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_0902 sua71; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1265 sua72; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1615 sua73; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1822 sua75; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1951 sua76; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2569 sua77; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2627 sua78; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2884 sua79; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_0166 spt15; TATA-box binding protein (TBP), component of TFIID and TFIIIB	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D      AArcS_2056 tfa1; Transcription initiation factor IIE, alpha subunit	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D      AArcS_0853 xpb; ssDNA-dependent ATPase, helicase superfamily II	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D      AArcS_0089 dinG; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0148 dinG2; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C    03040 Spliceosome
B
B  09122 Translation
C    03010 Ribosome [PATH:hara03010]
D      AArcS_0673 rpsB; Ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      AArcS_1153 rpsC; Ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      AArcS_0683 rpsD; Ribosomal protein S4 or related protein	K02986 RP-S4; small subunit ribosomal protein S4
D      AArcS_1139 rpsE; Ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      AArcS_2860 rpsG; Ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      AArcS_1144 rpsH; Ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      AArcS_0677 rpsI; Ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      AArcS_2797 rpsJ2; Ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      AArcS_0682 rpsK; Ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      AArcS_2859 rpsL; Ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      AArcS_0684 rpsM; Ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      AArcS_0409 rpsN; Ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      AArcS_1145 rpsN2; Ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      AArcS_2030 rpsO; Ribosomal protein S15P	K02956 RP-S15; small subunit ribosomal protein S15
D      AArcS_1150 rpsQ; Ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      AArcS_1155 rpsS; Ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      AArcS_2033 rps1a; Ribosomal protein S3AE	K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D      AArcS_1147 rps4a; Ribosomal protein S4E	K02987 RP-S4e; small subunit ribosomal protein S4e
D      AArcS_1186 rps6a; Ribosomal protein S6E/S10	K02991 RP-S6e; small subunit ribosomal protein S6e
D      AArcS_2801 rps8a; Ribosomal protein S8E	K02995 RP-S8e; small subunit ribosomal protein S8e
D      AArcS_1464 rps17a; Ribosomal protein S17E	K02962 RP-S17e; small subunit ribosomal protein S17e
D      AArcS_3043 rps19a; Ribosomal protein S19E (S16A)	K02966 RP-S19e; small subunit ribosomal protein S19e
D      AArcS_2493 rps24a; Ribosomal protein S24E	K02974 RP-S24e; small subunit ribosomal protein S24e
D      AArcS_1867 rps27a; Ribosomal protein S27E	K02978 RP-S27e; small subunit ribosomal protein S27e
D      AArcS_1058 rps28a; Ribosomal protein S28E/S33	K02979 RP-S28e; small subunit ribosomal protein S28e
D      AArcS_0948 rplA; Ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      AArcS_1156 rplB; Ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      AArcS_1159 rplC; Ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      AArcS_1146 rplE; Ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      AArcS_1143 rplF; Ribosomal protein L6P	K02933 RP-L6; large subunit ribosomal protein L6
D      AArcS_0947 rplJ; Ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      AArcS_0950 rplK; Ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      AArcS_0946 rpp1a; Ribosomal protein L12E/L44/L45/RPP1/RPP2	K02869 RP-L12; large subunit ribosomal protein L12
D      AArcS_0678 rplM; Ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      AArcS_1149 rplN; Ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      AArcS_1137 rplO; Ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      AArcS_1140 rplR; Ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      AArcS_1154 rplV; Ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      AArcS_1157 rplW; Ribosomal protein L23	K02892 RP-L23; large subunit ribosomal protein L23
D      AArcS_1148 rplX; Ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      AArcS_1152 rpmC; Ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      AArcS_1138 rpmD; Ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      AArcS_1158 rplD; Ribosomal protein L4	K02930 RP-L4e; large subunit ribosomal protein L4e
D      AArcS_1059 rpl7Ae; Ribosomal protein L7AE	K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D      AArcS_0750 rplP; Ribosomal protein L10AE/L16	K02866 RP-L10e; large subunit ribosomal protein L10e
D      AArcS_1085 rplP2; Ribosomal protein L10AE/L16	K02866 RP-L10e; large subunit ribosomal protein L10e
D      AArcS_2162 rpl15a; Ribosomal protein L15E	K02877 RP-L15e; large subunit ribosomal protein L15e
D      AArcS_0679 rpl18a; Ribosomal protein L18E	K02883 RP-L18e; large subunit ribosomal protein L18e
D      AArcS_1141 rpl19a; Ribosomal protein L19E	K02885 RP-L19e; large subunit ribosomal protein L19e
D      AArcS_1506 rpl21a; Ribosomal protein L21E	K02889 RP-L21e; large subunit ribosomal protein L21e
D      AArcS_0255 rpl31a; Ribosomal protein L31E	K02910 RP-L31e; large subunit ribosomal protein L31e
D      AArcS_1142 rpl32; Ribosomal protein L32E	K02912 RP-L32e; large subunit ribosomal protein L32e
D      AArcS_1979 rpl43a; Ribosomal protein L37AE/L43A	K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D      AArcS_0254 rpl39; Ribosomal protein L39E	K02924 RP-L39e; large subunit ribosomal protein L39e
D      AArcS_0252 rpl40e; Ribosomal protein L40E	K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D      AArcS_1868 rpl42a; Ribosomal protein L44E	K02929 RP-L44e; large subunit ribosomal protein L44e
D      AArcS_0258 rpl20a; Ribosomal protein L20A (L18A)	K02944 RP-LX; large subunit ribosomal protein LX
D      AArcS_0201 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      AArcS_0203 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      AArcS_0204 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
C    00970 Aminoacyl-tRNA biosynthesis [PATH:hara00970]
D      AArcS_2799 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_0202 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_1948 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_2028 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_1962 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0323 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_1855 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0287 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0328 tRNA-Asn	K14220 tRNA-Asn; tRNA Asn
D      AArcS_2848 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      AArcS_2851 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      AArcS_0207 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      AArcS_1219 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      AArcS_0015 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      AArcS_0889 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      AArcS_1556 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      AArcS_0038 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_1162 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_1516 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_2113 tRNA-His	K14226 tRNA-His; tRNA His
D      AArcS_2871 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      AArcS_0370 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_1015 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0594 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0680 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0854 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_1326 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      AArcS_0339 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      AArcS_0329 tRNA-Ile	K14230 tRNA-Met; tRNA Met
D      AArcS_1873 tRNA-iMet	K14230 tRNA-Met; tRNA Met
D      AArcS_2125 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      AArcS_2748 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      AArcS_2782 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1082 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1116 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1441 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_0685 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_2918 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_2175 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_0522 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      AArcS_0046 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      AArcS_1322 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      AArcS_2314 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      AArcS_2938 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      AArcS_2745 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      AArcS_1327 glnS; Glutamyl-or glutaminyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      AArcS_0900 gatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      AArcS_2053 gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      AArcS_0901 gatC; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      AArcS_2098 ansB2; L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7]
D      AArcS_1420 gatE; Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain)	K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
D      AArcS_0356 alaS; Alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      AArcS_2635 asnS; Aspartyl/asparaginyl-tRNA synthetase	K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D      AArcS_0119 grs1; Glycyl-tRNA synthetase (class II)	K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D      AArcS_0437 thrS; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_2993 thrS2; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_2486 serS; Seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      AArcS_0851 cysS; Cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      AArcS_2640 metG; Methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      AArcS_0483 purN; Folate-dependent phosphoribosylglycinamide formyltransferase PurN	K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D      AArcS_2723 valS; Valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      AArcS_3101 leuS; Leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      AArcS_3129 ileS; Isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      AArcS_3051 lysS; Lysyl-tRNA synthetase, class I	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      AArcS_3017 argS; Arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      AArcS_2475 proS; Prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      AArcS_0176 hisS; Histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      AArcS_0196 pheS; Phenylalanyl-tRNA synthetase alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      AArcS_0197 pheT; Phenylalanyl-tRNA synthetase beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      AArcS_1379 tyrS; Tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      AArcS_0192 trpS; Tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C    03013 Nucleocytoplasmic transport
C    03015 mRNA surveillance pathway
C    03008 Ribosome biogenesis in eukaryotes
B
B  09123 Folding, sorting and degradation
C    03060 Protein export [PATH:hara03060]
D      AArcS_1136 secY; Preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      AArcS_0429 secD; Preprotein translocase subunit SecD	K03072 secD; preprotein translocase subunit SecD
D      AArcS_0428 secF; Preprotein translocase subunit SecF	K03074 secF; preprotein translocase subunit SecF
D      AArcS_0272 ffh; Signal recognition particle GTPase	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      AArcS_0260 ftsY; Signal recognition particle GTPase	K03110 ftsY; fused signal recognition particle receptor
D      AArcS_2593 sss1; Preprotein translocase subunit Sss1	K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D      AArcS_1260 sec65; Signal recognition particle 19 kDa protein	K03105 SRP19; signal recognition particle subunit SRP19
D      AArcS_0028 arsA; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_2582 arsA2; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_1961 tatA; Sec-independent protein secretion pathway component	K03116 tatA; sec-independent protein translocase protein TatA
D      AArcS_3080 tatC; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
D      AArcS_3081 tatC2; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
D      AArcS_0002 lepB; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_0392 lepB2; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_2681 lepB3; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_2686 lepB4; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C    04141 Protein processing in endoplasmic reticulum
C    04130 SNARE interactions in vesicular transport
C    04120 Ubiquitin mediated proteolysis
C    04122 Sulfur relay system [PATH:hara04122]
D      AArcS_0085 sseA; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_0088 sseA2; Rhodanese-related sulfurtransferase	K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D      AArcS_2224 tusA; TusA-related sulfurtransferase	K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D      AArcS_3048 moaE; Molybdopterin converting factor, large subunit	K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D      AArcS_0646 moaA; Molybdenum cofactor biosynthesis enzyme	K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D      AArcS_2101 moaD; Molybdopterin converting factor, small subunit	K03636 moaD; sulfur-carrier protein
D      AArcS_2752 moaD2; Molybdopterin converting factor, small subunit	K03636 moaD; sulfur-carrier protein
D      AArcS_1767 moaC; Molybdenum cofactor biosynthesis enzyme	K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D      AArcS_0401 moaB; Molybdopterin biosynthesis enzyme	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      AArcS_2975 moaB2; Molybdopterin biosynthesis enzyme	K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D      AArcS_1857 thiI; tRNA S(4)U 4-thiouridine synthase	K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D      AArcS_0154 thiS; Sulfur transfer protein involved in thiamine biosynthesis	K03154 thiS; sulfur carrier protein
C    03050 Proteasome [PATH:hara03050]
D      AArcS_0423 rpt1; ATP-dependent 26S proteasome regulatory subunit	K03420 psmR; proteasome regulatory subunit
D      AArcS_2026 rpt12; ATP-dependent 26S proteasome regulatory subunit	K03420 psmR; proteasome regulatory subunit
D      AArcS_1021 pre1; 20S proteasome, alpha subunit	K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D      AArcS_1373 pre12; 20S proteasome, beta subunit	K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C    03018 RNA degradation [PATH:hara03018]
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      AArcS_2354 vacB; Exoribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      AArcS_1358 rnjA; mRNA degradation ribonuclease J1/J2	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      AArcS_1723 dnaK; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2217 dnaK2; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
B
B  09124 Replication and repair
C    03030 DNA replication [PATH:hara03030]
D      AArcS_2714 dnaG; DNA primase (bacterial type)	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      AArcS_2568 rnhA2; Ribonuclease HI	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      AArcS_0431 rnhB; Ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      AArcS_0452 polB2; DNA polymerase PolB2, inactivated	K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D      AArcS_0861 polB3; DNA polymerase PolB3	K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D      AArcS_0003 hys2; Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B	K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D      AArcS_0108 Archaeal DNA polymerase II, large subunit	K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D      AArcS_0066 DNA endonuclease related to intein-encoded endonuclease	K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D      AArcS_1524 pri1; Eukaryotic-type DNA primase, catalytic (small) subunit	K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D      AArcS_3073 pri2; Eukaryotic-type DNA primase, large subunit	K18882 priL; DNA primase large subunit
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_0152 holB; ATPase involved in DNA replication HolB, small subunit	K04801 rfcS; replication factor C small subunit
D      AArcS_0163 holB2; ATPase involved in DNA replication HolB, small subunit	K04801 rfcS; replication factor C small subunit
D      AArcS_2416 holB3; ATPase involved in DNA replication HolB, large subunit	K04800 rfcL; replication factor C large subunit
D      AArcS_1221 UvrD/REP helicase	K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C    03410 Base excision repair [PATH:hara03410]
D      AArcS_0850 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase	K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D      AArcS_1920 nth; EndoIII-related endonuclease	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      AArcS_2343 nth2; EndoIII-related endonuclease	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      AArcS_1426 mutY; A/G-specific DNA glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D      AArcS_1942 alkA2; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D      AArcS_1510 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_2482 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_3127 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_2257 nfo; Endonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D      AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C    03420 Nucleotide excision repair [PATH:hara03420]
D      AArcS_2909 uvrA; Excinuclease ABC subunit A, ATPase	K03701 uvrA; excinuclease ABC subunit A
D      AArcS_0076 uvrB; Excinuclease ABC subunit B, helicase	K03702 uvrB; excinuclease ABC subunit B
D      AArcS_3133 uvrC; Excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C
D      AArcS_1787 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_3005 uvrD; Superfamily I DNA and RNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      AArcS_0853 xpb; ssDNA-dependent ATPase, helicase superfamily II	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D      AArcS_0089 dinG; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0148 dinG2; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C    03430 Mismatch repair [PATH:hara03430]
D      AArcS_1755 mutS; Mismatch repair ATPase (MutS family)	K03555 mutS; DNA mismatch repair protein MutS
D      AArcS_2157 mutS2; Mismatch repair ATPase (MutS family)	K03555 mutS; DNA mismatch repair protein MutS
D      AArcS_2144 mutS2-1; DNA structure-specific ATPase involved in suppression of recombination, MutS family	K07456 mutS2; DNA mismatch repair protein MutS2
D      AArcS_3086 mutS2-2; DNA structure-specific ATPase involved in suppression of recombination, MutS family	K07456 mutS2; DNA mismatch repair protein MutS2
D      AArcS_2153 mutL2; DNA mismatch repair enzyme (predicted ATPase)	K03572 mutL; DNA mismatch repair protein MutL
D      AArcS_1787 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_3005 uvrD; Superfamily I DNA and RNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_1624 xseA; Exonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      AArcS_1625 hypothetical protein	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C    03440 Homologous recombination [PATH:hara03440]
D      AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
C    03450 Non-homologous end-joining
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
C    03460 Fanconi anemia pathway
B
B  09126 Chromosome
C    03082 ATP-dependent chromatin remodeling
C    03083 Polycomb repressive complex
B
B  09125 Information processing in viruses
C    03230 Viral genome structure
C    03240 Viral replication
C    03250 Viral life cycle - HIV-1 [PATH:hara03250]
D      AArcS_0368 ppiB; Peptidyl-prolyl cis-trans isomerase (rotamase) -cyclophilin family	K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D      AArcS_2497 spt4; Transcription elongation factor Spt4/RpoE2, zincfinger protein	K15171 SUPT4H1; transcription elongation factor SPT4
D      AArcS_2592 nusG; Transcription antiterminator NusG	K15172 SUPT5H; transcription elongation factor SPT5
C    03260 Virion - Human immunodeficiency virus
C    03271 Virion - Rotavirus
C    03262 Virion - Coronavirus
C    03261 Virion - Influenza virus
C    03263 Virion - Enterovirus
C    03264 Virion - Flavivirus
C    03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C    03266 Virion - Herpesvirus
C    03268 Virion - Orthopoxvirus
C    03267 Virion - Adenovirus
C    03259 Virion - Bacteriophages T4 and T7
C    03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B  09131 Membrane transport
C    02010 ABC transporters [PATH:hara02010]
D      AArcS_2279 tupB; ABC-type tungstate transport system, permease component	K05772 tupA; tungstate transport system substrate-binding protein
D      AArcS_2278 tupA; ABC-type tungstate transport system, periplasmiccomponent	K05773 tupB; tungstate transport system permease protein
D      AArcS_2277 glnQ2; ABC-type polar amino acid transport system, ATPase component	K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D      AArcS_1233 modA; ABC-type molybdate transport system, periplasmiccomponent	K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D      AArcS_1232 cysU; ABC-type sulfate transport system, permease component	K15496 wtpB; molybdate/tungstate transport system permease protein
D      AArcS_0634 tauB; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_2813 tauB2; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_0666 afuA; ABC-type Fe3+ transport system, periplasmic component	K02012 afuA; iron(III) transport system substrate-binding protein
D      AArcS_0665 thiP3; ABC-type Fe3+ transport system, permease component	K02011 afuB; iron(III) transport system permease protein
D      AArcS_0664 potA3; ABC-type spermidine/putrescine transport system,ATPase component	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      AArcS_2803 potA6; ABC-type spermidine/putrescine transport system,ATPase component	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      AArcS_2087 ugpB2; ABC-type sugar transport system, periplasmic component	K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D      AArcS_0419 potA; ABC-type spermidine/putrescine transport system,ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_2085 potA5; ABC-type spermidine/putrescine transport system,ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_2966 malK; ABC-type sugar transport system, ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_0420 malE; Maltose-binding periplasmic protein	K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D      AArcS_1361 malE2; Maltose-binding periplasmic protein	K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D      AArcS_0421 ugpA; ABC-type sugar transport system, permease component	K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D      AArcS_0422 malG; ABC-type maltose transport system, permease component	K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D      AArcS_2963 ugpB3; ABC-type sugar transport system, periplasmic component	K10236 thuE; trehalose/maltose transport system substrate-binding protein
D      AArcS_2964 ugpA3; ABC-type sugar transport system, permease component	K10237 thuF; trehalose/maltose transport system permease protein
D      AArcS_2965 ugpE2; ABC-type sugar transport system, permease component	K10238 thuG; trehalose/maltose transport system permease protein
D      AArcS_2324 med; putative ABC-type transport system, periplasmic component/surface lipoprotein	K07335 bmpA; basic membrane protein A and related proteins
D      AArcS_2322 ABC-type uncharacterized transport system, permease component	K23535 nupB; general nucleoside transport system permease protein
D      AArcS_2321 putative ABC-type transport system, permease component	K23536 nupC; general nucleoside transport system permease protein
D      AArcS_2323 ABC-type uncharacterized transport system, ATPase component	K23537 nupA; general nucleoside transport system ATP-binding protein
D      AArcS_2193 rbsB; ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain	K10439 rbsB; ribose transport system substrate-binding protein
D      AArcS_0094 pstS; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2675 pstS2; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2984 pstS3; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_0095 pstC; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_2674 pstC2; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_2985 pstC3; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_0096 pstA; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_2673 pstA2; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_2986 pstA3; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_0097 pstB; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_2672 pstB2; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_2987 pstB3; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_1215 phnD; ABC-type phosphate/phosphonate transport system,periplasmic component	K02044 phnD; phosphonate transport system substrate-binding protein
D      AArcS_2369 phnD2; ABC-type phosphate/phosphonate transport system,periplasmic component	K02044 phnD; phosphonate transport system substrate-binding protein
D      AArcS_1217 phnE; ABC-type phosphate/phosphonate transport system,permease component	K02042 phnE; phosphonate transport system permease protein
D      AArcS_2367 phnE2; ABC-type phosphate/phosphonate transport system,permease component	K02042 phnE; phosphonate transport system permease protein
D      AArcS_1216 phnC; ABC-type phosphate/phosphonate transport system,ATPase component	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      AArcS_2368 phnC2; ABC-type phosphate/phosphonate transport system,ATPase component	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      AArcS_0578 lraI; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_1009 lraI2; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_1111 lraI3; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_0577 znuB; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1011 znuB2; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1113 znuB3; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1010 znuC; ABC-type Mn/Zn transport system, ATPase component	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      AArcS_1112 znuC2; ABC-type Mn/Zn transport system, ATPase component	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      AArcS_3170 bioY; Uncharacterized protein	K03523 bioY; biotin transport system substrate-specific component
D      AArcS_3172 ecfT; Energy-coupling factor transporter transmembrane protein EcfT	K16783 bioN; biotin transport system permease protein
D      AArcS_3171 ecfA2; Energy-coupling factor transporter ATP-binding protein EcfA2	K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D      AArcS_0789 ABC-2 family transporter	K19341 nosY; Cu-processing system permease protein
D      AArcS_0787 Lipoprotein NosD family	K07218 nosD; nitrous oxidase accessory protein
D      AArcS_0788 ccmA4; ABC-type multidrug transport system, ATPase component	K19340 nosF; Cu-processing system ATP-binding protein
C    02060 Phosphotransferase system (PTS) [PATH:hara02060]
D      AArcS_0223 ptsA; Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)	K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D      AArcS_0222 fruB; Phosphotransferase system HPr-related protein	K02784 ptsH; phosphocarrier protein HPr
D      AArcS_0220 fruA; Phosphotransferase system, fructose-specific IICcomponent	K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D      AArcS_0224 fruB2; Phosphotransferase system fructose-specific component IIB	K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D      AArcS_0221 ptsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D      AArcS_0060 fruK; Fructose-1-phosphate kinase or kinase (PfkB)	K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C    03070 Bacterial secretion system [PATH:hara03070]
D      AArcS_0429 secD; Preprotein translocase subunit SecD	K03072 secD; preprotein translocase subunit SecD
D      AArcS_0428 secF; Preprotein translocase subunit SecF	K03074 secF; preprotein translocase subunit SecF
D      AArcS_1136 secY; Preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      AArcS_0260 ftsY; Signal recognition particle GTPase	K03110 ftsY; fused signal recognition particle receptor
D      AArcS_0272 ffh; Signal recognition particle GTPase	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      AArcS_1961 tatA; Sec-independent protein secretion pathway component	K03116 tatA; sec-independent protein translocase protein TatA
D      AArcS_3080 tatC; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
D      AArcS_3081 tatC2; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
B
B  09132 Signal transduction
C    02020 Two-component system [PATH:hara02020]
D      AArcS_0094 pstS; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2675 pstS2; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2984 pstS3; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2395 ctaA; Uncharacterized protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      AArcS_1170 Glycosyl hydrolase 68 family, including levansucrase and invertase	K00692 sacB; levansucrase [EC:2.4.1.10]
D      AArcS_2019 mcl; Beta-methylmalyl-CoA lyase, Citrate lyase beta subunit family	K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D      AArcS_1462 citG; Triphosphoribosyl-dephospho-CoA synthetase	K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_2001 cheR; Methylase of chemotaxis methyl-accepting protein	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      AArcS_1205 tar; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_2158 tar2; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_1994 cheW; Chemotaxis signal transduction protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      AArcS_1997 cheY7; Rec domain	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      AArcS_1995 cheY6; Rec domain	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      AArcS_1996 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      AArcS_0550 cydA; Cytochrome bd-type quinol oxidase, subunit 1	K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D      AArcS_0549 cydB; Cytochrome bd-type quinol oxidase, subunit 2	K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D      AArcS_1799 wecC2; UDP-N-acetyl-D-mannosaminuronate dehydrogenase	K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D      AArcS_1808 wecC3; UDP-N-acetyl-D-mannosaminuronate dehydrogenase	K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C    04010 MAPK signaling pathway
C    04013 MAPK signaling pathway - fly
C    04016 MAPK signaling pathway - plant
C    04011 MAPK signaling pathway - yeast
C    04012 ErbB signaling pathway
C    04014 Ras signaling pathway
C    04015 Rap1 signaling pathway
C    04310 Wnt signaling pathway
C    04330 Notch signaling pathway
C    04340 Hedgehog signaling pathway
C    04341 Hedgehog signaling pathway - fly
C    04350 TGF-beta signaling pathway
C    04390 Hippo signaling pathway
C    04391 Hippo signaling pathway - fly
C    04392 Hippo signaling pathway - multiple species
C    04370 VEGF signaling pathway
C    04371 Apelin signaling pathway
C    04630 JAK-STAT signaling pathway
C    04064 NF-kappa B signaling pathway
C    04668 TNF signaling pathway
C    04066 HIF-1 signaling pathway
C    04068 FoxO signaling pathway
C    04020 Calcium signaling pathway
C    04070 Phosphatidylinositol signaling system
C    04072 Phospholipase D signaling pathway
C    04071 Sphingolipid signaling pathway
C    04024 cAMP signaling pathway
C    04022 cGMP-PKG signaling pathway
C    04151 PI3K-Akt signaling pathway
C    04152 AMPK signaling pathway
C    04150 mTOR signaling pathway
C    04075 Plant hormone signal transduction
B
B  09133 Signaling molecules and interaction
C    04080 Neuroactive ligand-receptor interaction
C    04060 Cytokine-cytokine receptor interaction
C    04061 Viral protein interaction with cytokine and cytokine receptor
C    04512 ECM-receptor interaction
C    04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B  09141 Transport and catabolism
C    04144 Endocytosis
C    04145 Phagosome
C    04142 Lysosome
C    04146 Peroxisome
C    04140 Autophagy - animal
C    04138 Autophagy - yeast
C    04136 Autophagy - other
C    04137 Mitophagy - animal
C    04139 Mitophagy - yeast
C    04148 Efferocytosis
D      AArcS_1449 speB4; Arginase family enzyme	K01476 rocF; arginase [EC:3.5.3.1]
B
B  09143 Cell growth and death
C    04110 Cell cycle
C    04111 Cell cycle - yeast
C    04112 Cell cycle - Caulobacter
C    04113 Meiosis - yeast
C    04114 Oocyte meiosis
C    04210 Apoptosis
C    04214 Apoptosis - fly
C    04215 Apoptosis - multiple species
C    04216 Ferroptosis
C    04217 Necroptosis
C    04115 p53 signaling pathway
C    04218 Cellular senescence
B
B  09144 Cellular community - eukaryotes
C    04510 Focal adhesion
C    04520 Adherens junction
C    04530 Tight junction
C    04540 Gap junction
C    04550 Signaling pathways regulating pluripotency of stem cells
B
B  09145 Cellular community - prokaryotes
C    02024 Quorum sensing [PATH:hara02024]
D      AArcS_2120 trpE; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2935 trpE2; Anthranilate/para-aminobenzoate synthase component I	K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D      AArcS_2121 pabA; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      AArcS_2934 pabA2; Anthranilate/para-aminobenzoate synthase component II	K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D      AArcS_0569 potD; Spermidine/putrescine-binding periplasmic protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      AArcS_0566 thiP; ABC-type Fe3+ transport system, permease component	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      AArcS_0567 thiP2; ABC-type Fe3+ transport system, permease component	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      AArcS_0568 potA2; ABC-type spermidine/putrescine transport system,ATPase component	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      AArcS_1231 potA4; ABC-type spermidine/putrescine transport system,ATPase component	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      AArcS_2489 faa1; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2490 faa12; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_1174 ugpB; ABC-type sugar transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1481 ddpA; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1880 livK2; ABC-type branched-chain amino acid transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1887 ddpA2; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_2180 ddpA3; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1175 dppB; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1879 dppB2; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1886 dppB3; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_2181 dppB4; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1176 dppC; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1878 dppC2; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1885 dppC3; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_2182 dppC4; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1177 dppD; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1877 dppD2; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1884 dppD3; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_2183 dppD4; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1178 appF; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_1876 appF2; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_1883 appF3; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_2184 appF4; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_1136 secY; Preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      AArcS_0260 ftsY; Signal recognition particle GTPase	K03110 ftsY; fused signal recognition particle receptor
D      AArcS_0272 ffh; Signal recognition particle GTPase	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C    05111 Biofilm formation - Vibrio cholerae
C    02025 Biofilm formation - Pseudomonas aeruginosa
C    02026 Biofilm formation - Escherichia coli
B
B  09142 Cell motility
C    02030 Bacterial chemotaxis [PATH:hara02030]
D      AArcS_1205 tar; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_2158 tar2; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_2087 ugpB2; ABC-type sugar transport system, periplasmic component	K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D      AArcS_2193 rbsB; ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain	K10439 rbsB; ribose transport system substrate-binding protein
D      AArcS_1997 cheY7; Rec domain	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      AArcS_1994 cheW; Chemotaxis signal transduction protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      AArcS_1995 cheY6; Rec domain	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      AArcS_1998 cheC; Chemotaxis protein CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      AArcS_1999 cheC2; Chemotaxis protein CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      AArcS_1996 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      AArcS_2000 cheD; Chemotaxis protein	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      AArcS_2001 cheR; Methylase of chemotaxis methyl-accepting protein	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
C    02040 Flagellar assembly
C    04814 Motor proteins
C    04820 Cytoskeleton in muscle cells
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C    04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B  09151 Immune system
C    04640 Hematopoietic cell lineage
C    04610 Complement and coagulation cascades
C    04611 Platelet activation
C    04613 Neutrophil extracellular trap formation
C    04620 Toll-like receptor signaling pathway
C    04624 Toll and Imd signaling pathway
C    04621 NOD-like receptor signaling pathway
C    04622 RIG-I-like receptor signaling pathway
C    04623 Cytosolic DNA-sensing pathway
C    04625 C-type lectin receptor signaling pathway
C    04650 Natural killer cell mediated cytotoxicity
C    04612 Antigen processing and presentation
C    04660 T cell receptor signaling pathway
C    04658 Th1 and Th2 cell differentiation
C    04659 Th17 cell differentiation
C    04657 IL-17 signaling pathway
C    04662 B cell receptor signaling pathway
C    04664 Fc epsilon RI signaling pathway
C    04666 Fc gamma R-mediated phagocytosis
C    04670 Leukocyte transendothelial migration
C    04672 Intestinal immune network for IgA production
C    04062 Chemokine signaling pathway
B
B  09152 Endocrine system
C    04911 Insulin secretion
C    04910 Insulin signaling pathway
C    04922 Glucagon signaling pathway
C    04923 Regulation of lipolysis in adipocytes
C    04920 Adipocytokine signaling pathway
C    03320 PPAR signaling pathway
C    04929 GnRH secretion
C    04912 GnRH signaling pathway
C    04913 Ovarian steroidogenesis
C    04915 Estrogen signaling pathway
C    04914 Progesterone-mediated oocyte maturation
C    04917 Prolactin signaling pathway
C    04921 Oxytocin signaling pathway
C    04926 Relaxin signaling pathway
C    04935 Growth hormone synthesis, secretion and action
C    04918 Thyroid hormone synthesis
C    04919 Thyroid hormone signaling pathway
C    04928 Parathyroid hormone synthesis, secretion and action
C    04916 Melanogenesis
C    04924 Renin secretion
C    04614 Renin-angiotensin system
C    04925 Aldosterone synthesis and secretion
C    04927 Cortisol synthesis and secretion
B
B  09153 Circulatory system
C    04260 Cardiac muscle contraction
C    04261 Adrenergic signaling in cardiomyocytes
C    04270 Vascular smooth muscle contraction
B
B  09154 Digestive system
C    04970 Salivary secretion
C    04971 Gastric acid secretion
C    04972 Pancreatic secretion
C    04976 Bile secretion
C    04973 Carbohydrate digestion and absorption
C    04974 Protein digestion and absorption
C    04975 Fat digestion and absorption
C    04979 Cholesterol metabolism
C    04977 Vitamin digestion and absorption
C    04980 Cobalamin transport and metabolism [PATH:hara04980]
D      AArcS_0725 pduO; Cob(I)alamin adenosyltransferase	K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D      AArcS_0913 argK; Putative periplasmic protein kinase ArgK or related GTPase of G3E family	K07588 MMAA; GTPase [EC:3.6.5.-]
C    04978 Mineral absorption
B
B  09155 Excretory system
C    04962 Vasopressin-regulated water reabsorption
C    04960 Aldosterone-regulated sodium reabsorption
C    04961 Endocrine and other factor-regulated calcium reabsorption
C    04964 Proximal tubule bicarbonate reclamation
C    04966 Collecting duct acid secretion
B
B  09156 Nervous system
C    04724 Glutamatergic synapse
C    04727 GABAergic synapse
C    04725 Cholinergic synapse
C    04728 Dopaminergic synapse
C    04726 Serotonergic synapse
C    04720 Long-term potentiation
C    04730 Long-term depression
C    04723 Retrograde endocannabinoid signaling
C    04721 Synaptic vesicle cycle
C    04722 Neurotrophin signaling pathway
B
B  09157 Sensory system
C    04744 Phototransduction
C    04745 Phototransduction - fly
C    04740 Olfactory transduction
C    04742 Taste transduction
C    04750 Inflammatory mediator regulation of TRP channels
B
B  09158 Development and regeneration
C    04320 Dorso-ventral axis formation
C    04360 Axon guidance
C    04361 Axon regeneration
C    04380 Osteoclast differentiation
B
B  09149 Aging
C    04211 Longevity regulating pathway
C    04212 Longevity regulating pathway - worm
C    04213 Longevity regulating pathway - multiple species
B
B  09159 Environmental adaptation
C    04710 Circadian rhythm
C    04713 Circadian entrainment
C    04711 Circadian rhythm - fly
C    04712 Circadian rhythm - plant
C    04714 Thermogenesis
C    04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B  09161 Cancer: overview
C    05200 Pathways in cancer
C    05202 Transcriptional misregulation in cancer
C    05206 MicroRNAs in cancer
C    05205 Proteoglycans in cancer
C    05204 Chemical carcinogenesis - DNA adducts
C    05207 Chemical carcinogenesis - receptor activation
C    05208 Chemical carcinogenesis - reactive oxygen species
C    05203 Viral carcinogenesis
C    05230 Central carbon metabolism in cancer
C    05231 Choline metabolism in cancer
C    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B  09162 Cancer: specific types
C    05210 Colorectal cancer
C    05212 Pancreatic cancer
C    05225 Hepatocellular carcinoma
C    05226 Gastric cancer
C    05214 Glioma
C    05216 Thyroid cancer
C    05221 Acute myeloid leukemia
C    05220 Chronic myeloid leukemia
C    05217 Basal cell carcinoma
C    05218 Melanoma
C    05211 Renal cell carcinoma
C    05219 Bladder cancer
C    05215 Prostate cancer
C    05213 Endometrial cancer
C    05224 Breast cancer
C    05222 Small cell lung cancer
C    05223 Non-small cell lung cancer
B
B  09172 Infectious disease: viral
C    05166 Human T-cell leukemia virus 1 infection
C    05170 Human immunodeficiency virus 1 infection
C    05161 Hepatitis B
C    05160 Hepatitis C
C    05171 Coronavirus disease - COVID-19
C    05164 Influenza A
C    05162 Measles
C    05168 Herpes simplex virus 1 infection
C    05163 Human cytomegalovirus infection
C    05167 Kaposi sarcoma-associated herpesvirus infection
C    05169 Epstein-Barr virus infection
C    05165 Human papillomavirus infection
B
B  09171 Infectious disease: bacterial
C    05110 Vibrio cholerae infection
C    05120 Epithelial cell signaling in Helicobacter pylori infection
C    05130 Pathogenic Escherichia coli infection
C    05132 Salmonella infection
C    05131 Shigellosis
C    05135 Yersinia infection
C    05133 Pertussis
C    05134 Legionellosis
C    05150 Staphylococcus aureus infection
C    05152 Tuberculosis
C    05100 Bacterial invasion of epithelial cells
B
B  09174 Infectious disease: parasitic
C    05146 Amoebiasis
C    05144 Malaria
C    05145 Toxoplasmosis
C    05140 Leishmaniasis
C    05142 Chagas disease
C    05143 African trypanosomiasis
B
B  09163 Immune disease
C    05310 Asthma
C    05322 Systemic lupus erythematosus
C    05323 Rheumatoid arthritis
C    05320 Autoimmune thyroid disease
C    05321 Inflammatory bowel disease
C    05330 Allograft rejection
C    05332 Graft-versus-host disease
C    05340 Primary immunodeficiency
B
B  09164 Neurodegenerative disease
C    05010 Alzheimer disease
C    05012 Parkinson disease
C    05014 Amyotrophic lateral sclerosis
C    05016 Huntington disease
C    05017 Spinocerebellar ataxia
C    05020 Prion disease
C    05022 Pathways of neurodegeneration - multiple diseases
B
B  09165 Substance dependence
C    05030 Cocaine addiction
C    05031 Amphetamine addiction
C    05032 Morphine addiction
C    05033 Nicotine addiction
C    05034 Alcoholism
B
B  09166 Cardiovascular disease
C    05417 Lipid and atherosclerosis
C    05418 Fluid shear stress and atherosclerosis
C    05410 Hypertrophic cardiomyopathy
C    05412 Arrhythmogenic right ventricular cardiomyopathy
C    05414 Dilated cardiomyopathy
C    05415 Diabetic cardiomyopathy
C    05416 Viral myocarditis
B
B  09167 Endocrine and metabolic disease
C    04930 Type II diabetes mellitus
C    04940 Type I diabetes mellitus
C    04950 Maturity onset diabetes of the young
C    04936 Alcoholic liver disease
C    04932 Non-alcoholic fatty liver disease
C    04931 Insulin resistance
C    04933 AGE-RAGE signaling pathway in diabetic complications
C    04934 Cushing syndrome
B
B  09175 Drug resistance: antimicrobial
C    01501 beta-Lactam resistance
C    01502 Vancomycin resistance
C    01503 Cationic antimicrobial peptide (CAMP) resistance
D      AArcS_0368 ppiB; Peptidyl-prolyl cis-trans isomerase (rotamase) -cyclophilin family	K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B  09176 Drug resistance: antineoplastic
C    01521 EGFR tyrosine kinase inhibitor resistance
C    01524 Platinum drug resistance
C    01523 Antifolate resistance
C    01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B  09181 Protein families: metabolism
C    01000 Enzymes [BR:hara01000]
C    01001 Protein kinases [BR:hara01001]
D      AArcS_2492 kae1p; Subunit of KEOPS complex, tRNA A37 threonylcarbamoyltransferase, contains a domain with ASKHA fold and RIO-type kinase (AP-endonuclease activity)	K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1]
D      AArcS_0157 rio1; Serine/threonine protein kinase involved in cellcycle control	K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D      AArcS_2164 rio2; RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D      AArcS_2238 Secreted protein, with PKD repeat domain	K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D      AArcS_1997 cheY7; Rec domain	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C    01009 Protein phosphatases and associated proteins [BR:hara01009]
D      AArcS_0650 gcd7; Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	K03238 EIF2S2; translation initiation factor 2 subunit 2
D      AArcS_2286 gcd72; Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	K03238 EIF2S2; translation initiation factor 2 subunit 2
D      AArcS_0174 sam1; S-adenosylhomocysteine hydrolase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      AArcS_3111 serB; Phosphoserine phosphatase	K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C    01002 Peptidases and inhibitors [BR:hara01002]
D      AArcS_3162 flaK2; Peptidase A24A, prepilin type IV	K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D      AArcS_0763 guaA; GMP synthase - Glutamine amidotransferase domain	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_1984 guaA2; GMP synthase - Glutamine amidotransferase domain	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_2978 guaA3; GMP synthase, PP-ATPase domain/subunit	K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D      AArcS_1542 purF; Glutamine phosphoribosylpyrophosphate amidotransferase	K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D      AArcS_2470 gltB; Glutamate synthase	K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D      AArcS_0440 glmS; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_1819 glmS2; Glucosamine 6-phosphate synthetase	K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D      AArcS_0909 asnB; Asparagine synthase (glutamine-hydrolyzing)	K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D      AArcS_1346 Exosortase	K24447 artA; archaeosortase A [EC:3.4.22.-]
D      AArcS_0749 Metal-dependent membrane protease, CAAX family	K07052 K07052; CAAX protease family protein
D      AArcS_0766 Metal-dependent membrane protease, CAAX family	K07052 K07052; CAAX protease family protein
D      AArcS_0414 pepF; Oligoendopeptidase F	K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D      AArcS_2300 argE; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D      AArcS_2261 abgB; Metal-dependent amidase/aminoacylase/carboxypeptidase	K12940 abgA; aminobenzoyl-glutamate utilization protein A
D      AArcS_2828 map; Methionine aminopeptidase	K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D      AArcS_2073 pepP; Xaa-Pro aminopeptidase	K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D      AArcS_3006 pepP3; Xaa-Pro aminopeptidase	K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D      AArcS_0210 ampS; Leucyl aminopeptidase (aminopeptidase T)	K19689 ampS; aminopeptidase [EC:3.4.11.-]
D      AArcS_0351 ampS2; Leucyl aminopeptidase (aminopeptidase T)	K19689 ampS; aminopeptidase [EC:3.4.11.-]
D      AArcS_0364 ypwA; Zn-dependent carboxypeptidase, M32 family	K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D      AArcS_0382 htpX; Zn-dependent protease with chaperone function	K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D      AArcS_2260 htpX2; Zn-dependent protease with chaperone function	K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D      AArcS_2461 htpX3; Zn-dependent protease with chaperone function	K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D      AArcS_2383 Archaemetzincin family protease	K06974 amzA; archaemetzincin [EC:3.4.-.-]
D      AArcS_1725 dppA; D-aminopeptidase	K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D      AArcS_2671 Membrane proteinase of CAAX superfamily, regulator of anti-sigma factor	K24131 prsW; protease PrsW [EC:3.4.-.-]
D      AArcS_0205 aprE; Subtilisin-like serine protease	K01342 aprE; subtilisin [EC:3.4.21.62]
D      AArcS_2614 lonB; putative ATP-dependent protease	K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D      AArcS_0002 lepB; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_0392 lepB2; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_2681 lepB3; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_2686 lepB4; Signal peptidase I	K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D      AArcS_2941 pvdQ; Acyl-homoserine lactone (AHL) acylase PvdQ	K01434 pac; penicillin G amidase [EC:3.5.1.11]
D      AArcS_2351 sppA; Periplasmic serine protease (ClpP class)	K04773 sppA; protease IV [EC:3.4.21.-]
D      AArcS_2579 putative nucleic acid binding protein containing the AN1-type Zn-finger	K07059 K07059; rhomboid family protein
D      AArcS_1021 pre1; 20S proteasome, alpha subunit	K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D      AArcS_1373 pre12; 20S proteasome, beta subunit	K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D      AArcS_2829 iaaA; Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily	K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D      AArcS_0984 ggt; Gamma-glutamyltransferase	K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C    01003 Glycosyltransferases [BR:hara01003]
D      AArcS_0847 Glycosyl transferase family 2	K23684 aglJ; dolichol-phosphate hexosyltransferase [EC:2.4.1.-]
D      AArcS_2654 Glycosyl transferase family 2	K22844 aglG; glucosyl-dolichyl phosphate glucuronosyltransferase [EC:2.4.1.356]
D      AArcS_0470 aglS; Dolichol phosphate-mannose mannosyltransferase	K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
D      AArcS_1839 aglS2; Dolichol phosphate-mannose mannosyltransferase	K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21]
D      AArcS_1170 Glycosyl hydrolase 68 family, including levansucrase and invertase	K00692 sacB; levansucrase [EC:2.4.1.10]
D      AArcS_2551 Glycosyltransferase	K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C    01005 Lipopolysaccharide biosynthesis proteins
C    01011 Peptidoglycan biosynthesis and degradation proteins [BR:hara01011]
D      AArcS_1346 Exosortase	K24447 artA; archaeosortase A [EC:3.4.22.-]
C    01004 Lipid biosynthesis proteins [BR:hara01004]
D      AArcS_0672 fabG4; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_2229 fabG10; Short-chain alcohol dehydrogenase	K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D      AArcS_0921 acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1047 acs2; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D      AArcS_1012 acdAB; Acyl-CoA synthetase, ATP-grasp containing subunit	K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D      AArcS_2489 faa1; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2490 faa12; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C    01008 Polyketide biosynthesis proteins [BR:hara01008]
D      AArcS_0362 putative O-methyltransferase YrrM	K19569 elmMIII; 8-demethyl-8-(2,3-dimethoxy-alpha-L-rhamnosyl)tetracenomycin-C 4'-O-methyltransferase [EC:2.1.1.307]
C    01006 Prenyltransferases [BR:hara01006]
D      AArcS_1359 ispA; Geranylgeranyl pyrophosphate synthase	K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      AArcS_3037 ispA3; Geranylgeranyl pyrophosphate synthase	K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D      AArcS_1905 ispA2; Geranylgeranyl pyrophosphate synthase	K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D      AArcS_2711 uppS2; Undecaprenyl pyrophosphate synthase	K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D      AArcS_0805 erg9; Phytoene/squalene synthetase	K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
D      AArcS_2865 erg92; Phytoene/squalene synthetase	K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D      AArcS_1040 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase	K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D      AArcS_0785 cyoE; Polyprenyltransferase (cytochrome oxidase assembly factor)	K02257 COX10; heme o synthase [EC:2.5.1.141]
C    01007 Amino acid related enzymes [BR:hara01007]
D      AArcS_3051 lysS; Lysyl-tRNA synthetase, class I	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      AArcS_1327 glnS; Glutamyl-or glutaminyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      AArcS_1379 tyrS; Tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      AArcS_0192 trpS; Tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      AArcS_0851 cysS; Cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      AArcS_3017 argS; Arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      AArcS_2640 metG; Methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      AArcS_3129 ileS; Isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      AArcS_2723 valS; Valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      AArcS_3101 leuS; Leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      AArcS_2635 asnS; Aspartyl/asparaginyl-tRNA synthetase	K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D      AArcS_0176 hisS; Histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      AArcS_0119 grs1; Glycyl-tRNA synthetase (class II)	K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D      AArcS_2486 serS; Seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      AArcS_2475 proS; Prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      AArcS_0437 thrS; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_2993 thrS2; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_0356 alaS; Alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      AArcS_0196 pheS; Phenylalanyl-tRNA synthetase alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      AArcS_0197 pheT; Phenylalanyl-tRNA synthetase beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      AArcS_1929 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_2243 Aspartate/tyrosine/aromatic aminotransferase	K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D      AArcS_0926 Aspartate/tyrosine/aromatic aminotransferase	K10907 K10907; aminotransferase [EC:2.6.1.-]
D      AArcS_1388 hisC; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase	K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D      AArcS_2415 bioF; 7-keto-8-aminopelargonate synthetase or related enzyme	K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D      AArcS_3064 argD; Ornithine/acetylornithine aminotransferase	K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D      AArcS_0518 gabT; 4-aminobutyrate aminotransferase or related aminotransferase	K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D      AArcS_3142 hemL; Glutamate-1-semialdehyde aminotransferase	K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D      AArcS_0771 ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D      AArcS_2122 ilvE2; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C    00199 Cytochrome P450 [BR:hara00199]
D      AArcS_0236 cypX2; Cytochrome P450	K23138 CYP109; cytochrome P450 family 109 [EC:1.14.-.-]
C    00194 Photosynthesis proteins
B
B  09182 Protein families: genetic information processing
C    03000 Transcription factors [BR:hara03000]
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_0166 spt15; TATA-box binding protein (TBP), component of TFIID and TFIIIB	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D      AArcS_1989 DNA-binding transcriptional regulator, Lrp family	K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D      AArcS_2096 Transcriptional regulator, ArsR family	K07721 K07721; ArsR family transcriptional regulator
D      AArcS_0928 putative transcriptional regulator fused phosphomethylpyrimidine kinase, involved in the thiamine biosynthesis	K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
D      AArcS_1972 putative transcriptional regulator fused phosphomethylpyrimidine kinase, involved in the thiamine biosynthesis	K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
D      AArcS_1448 troR2; Mn-dependent transcriptional regulator (DtxR family)	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D      AArcS_1258 troR; Mn-dependent transcriptional regulator (DtxR family)	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D      AArcS_1378 csa3; CRISPR-Cas assicated transcriptional regulator, contains CARF and HTH domain	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D      AArcS_0035 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_0415 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_1528 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_1529 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_2186 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_2868 Sugar-specific transcriptional regulator TrmB	K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D      AArcS_1533 atoS4; Signal transduction regulator	K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D      AArcS_2413 atoS10; Signal transduction regulator	K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D      AArcS_2589 atoS11; Signal transduction regulator	K06930 bat; HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
D      AArcS_0642 Transcriptional regulator, contains HTH domain	K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D      AArcS_0987 Transcriptional regulator, contains HTH domain	K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D      AArcS_1234 Transcriptional regulator, contains HTH domain	K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D      AArcS_2808 Transcriptional regulator, contains HTH domain	K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D      AArcS_2821 Transcriptional regulator, contains HTH domain	K23348 dmsR; HTH-type transcriptional regulator, dimethyl sulfoxide reductase transcription regulator
D      AArcS_0404 tfx; Transcriptional regulator	K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator
D      AArcS_2216 Orotate phosphoribosyltransferase-like protein	K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D      AArcS_2276 modE; N-terminal domain of molybdenum-binding protein	K02019 modE; molybdate transport system regulatory protein
D      AArcS_2873 csa3-2; CRISPR-Cas associated transcriptional regulator,contains CARF and HTH domain	K07725 csa3; CRISPR-associated protein Csa3
D      AArcS_0525 putative transcriptional regulator	K07728 K07728; putative transcriptional regulator
D      AArcS_0271 Transcriptional regulator, xre family	K07729 K07729; putative transcriptional regulator
D      AArcS_1347 putative transcriptional regulator	K07730 K07730; putative transcriptional regulator
D      AArcS_0743 putative transcriptional regulator	K07731 K07731; putative transcriptional regulator
D      AArcS_0397 nikR; Transcriptional regulator, CopG/Arc/MetJ family (DNA-binding and a metal-binding domains)	K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D      AArcS_0398 nikR2; Transcriptional regulator, CopG/Arc/MetJ family (DNA-binding and a metal-binding domains)	K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D      AArcS_0579 nikR3; Transcriptional regulator, CopG/Arc/MetJ family (DNA-binding and a metal-binding domains)	K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D      AArcS_0721 nikR4; Transcriptional regulator, CopG/Arc/MetJ family (DNA-binding and a metal-binding domains)	K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D      AArcS_2610 tenA; Transcriptional activator TenA	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D      AArcS_2611 tenA2; Transcriptional activator TenA	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C    03021 Transcription machinery [BR:hara03021]
D      AArcS_0072 sua7; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_0902 sua71; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1265 sua72; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1615 sua73; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1822 sua75; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_1951 sua76; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2569 sua77; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2627 sua78; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_2884 sua79; Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB
D      AArcS_0166 spt15; TATA-box binding protein (TBP), component of TFIID and TFIIIB	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D      AArcS_2056 tfa1; Transcription initiation factor IIE, alpha subunit	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D      AArcS_0853 xpb; ssDNA-dependent ATPase, helicase superfamily II	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D      AArcS_0089 dinG; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0148 dinG2; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_2497 spt4; Transcription elongation factor Spt4/RpoE2, zincfinger protein	K15171 SUPT4H1; transcription elongation factor SPT4
D      AArcS_2592 nusG; Transcription antiterminator NusG	K15172 SUPT5H; transcription elongation factor SPT5
D      AArcS_2858 nusA; Transcription elongation factor	K02600 nusA; transcription termination/antitermination protein NusA
D      AArcS_2856 rpoA; DNA-directed RNA polymerase subunit A'	K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D      AArcS_2857 rpoA2; DNA-directed RNA polymerase subunit A''	K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D      AArcS_2855 rpoB; DNA-directed RNA polymerase subunit B'	K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D      AArcS_2854 rpoB2; DNA-directed RNA polymerase subunit B''	K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D      AArcS_0681 rpoD; DNA-directed RNA polymerase subunit D	K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D      AArcS_2498 rpb7; DNA-directed RNA polymerase, subunit E'/Rpb7	K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D      AArcS_1505 rpo4; DNA-directed RNA polymerase, subunit Rpo4/RpoF	K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D      AArcS_2853 rpb5; DNA-directed RNA polymerase, subunit H, RpoH/RPB5	K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D      AArcS_0675 rpoK; DNA-directed RNA polymerase subunit K/omega	K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D      AArcS_1396 rpb11; DNA-directed RNA polymerase, subunit L	K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D      AArcS_0278 rpb9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	K03057 tfs; transcription factor S
D      AArcS_2449 rpb93; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	K03057 tfs; transcription factor S
D      AArcS_0981 rpb92; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	K03057 tfs; transcription factor S
C    03019 Messenger RNA biogenesis [BR:hara03019]
D      AArcS_2497 spt4; Transcription elongation factor Spt4/RpoE2, zincfinger protein	K15171 SUPT4H1; transcription elongation factor SPT4
D      AArcS_2592 nusG; Transcription antiterminator NusG	K15172 SUPT5H; transcription elongation factor SPT5
D      AArcS_0998 cdc481; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_2332 cdc483; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_0815 pelA; Release factor eRF1	K06965 PELO; protein pelota
D      AArcS_3019 eRF12; Peptide chain release factor eRF1	K03265 ETF1; peptide chain release factor subunit 1
D      AArcS_1097 gtpbp1; GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2796 tef1; Translation elongation factor EF-1 alpha, GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_1358 rnjA; mRNA degradation ribonuclease J1/J2	K12574 rnj; ribonuclease J [EC:3.1.-.-]
D      AArcS_2354 vacB; Exoribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      AArcS_1723 dnaK; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2217 dnaK2; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2545 Superfamily II helicase, archaea-specific	K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-]
C    03041 Spliceosome
C    03011 Ribosome [BR:hara03011]
D      AArcS_2033 rps1a; Ribosomal protein S3AE	K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D      AArcS_1147 rps4a; Ribosomal protein S4E	K02987 RP-S4e; small subunit ribosomal protein S4e
D      AArcS_1186 rps6a; Ribosomal protein S6E/S10	K02991 RP-S6e; small subunit ribosomal protein S6e
D      AArcS_2801 rps8a; Ribosomal protein S8E	K02995 RP-S8e; small subunit ribosomal protein S8e
D      AArcS_1464 rps17a; Ribosomal protein S17E	K02962 RP-S17e; small subunit ribosomal protein S17e
D      AArcS_3043 rps19a; Ribosomal protein S19E (S16A)	K02966 RP-S19e; small subunit ribosomal protein S19e
D      AArcS_2493 rps24a; Ribosomal protein S24E	K02974 RP-S24e; small subunit ribosomal protein S24e
D      AArcS_1867 rps27a; Ribosomal protein S27E	K02978 RP-S27e; small subunit ribosomal protein S27e
D      AArcS_1058 rps28a; Ribosomal protein S28E/S33	K02979 RP-S28e; small subunit ribosomal protein S28e
D      AArcS_1158 rplD; Ribosomal protein L4	K02930 RP-L4e; large subunit ribosomal protein L4e
D      AArcS_1059 rpl7Ae; Ribosomal protein L7AE	K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D      AArcS_0750 rplP; Ribosomal protein L10AE/L16	K02866 RP-L10e; large subunit ribosomal protein L10e
D      AArcS_1085 rplP2; Ribosomal protein L10AE/L16	K02866 RP-L10e; large subunit ribosomal protein L10e
D      AArcS_2162 rpl15a; Ribosomal protein L15E	K02877 RP-L15e; large subunit ribosomal protein L15e
D      AArcS_0679 rpl18a; Ribosomal protein L18E	K02883 RP-L18e; large subunit ribosomal protein L18e
D      AArcS_1141 rpl19a; Ribosomal protein L19E	K02885 RP-L19e; large subunit ribosomal protein L19e
D      AArcS_1506 rpl21a; Ribosomal protein L21E	K02889 RP-L21e; large subunit ribosomal protein L21e
D      AArcS_0255 rpl31a; Ribosomal protein L31E	K02910 RP-L31e; large subunit ribosomal protein L31e
D      AArcS_1142 rpl32; Ribosomal protein L32E	K02912 RP-L32e; large subunit ribosomal protein L32e
D      AArcS_1979 rpl43a; Ribosomal protein L37AE/L43A	K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D      AArcS_0254 rpl39; Ribosomal protein L39E	K02924 RP-L39e; large subunit ribosomal protein L39e
D      AArcS_0252 rpl40e; Ribosomal protein L40E	K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D      AArcS_1868 rpl42a; Ribosomal protein L44E	K02929 RP-L44e; large subunit ribosomal protein L44e
D      AArcS_0673 rpsB; Ribosomal protein S2	K02967 RP-S2; small subunit ribosomal protein S2
D      AArcS_1153 rpsC; Ribosomal protein S3	K02982 RP-S3; small subunit ribosomal protein S3
D      AArcS_0683 rpsD; Ribosomal protein S4 or related protein	K02986 RP-S4; small subunit ribosomal protein S4
D      AArcS_1139 rpsE; Ribosomal protein S5	K02988 RP-S5; small subunit ribosomal protein S5
D      AArcS_2860 rpsG; Ribosomal protein S7	K02992 RP-S7; small subunit ribosomal protein S7
D      AArcS_1144 rpsH; Ribosomal protein S8	K02994 RP-S8; small subunit ribosomal protein S8
D      AArcS_0677 rpsI; Ribosomal protein S9	K02996 RP-S9; small subunit ribosomal protein S9
D      AArcS_2797 rpsJ2; Ribosomal protein S10	K02946 RP-S10; small subunit ribosomal protein S10
D      AArcS_0682 rpsK; Ribosomal protein S11	K02948 RP-S11; small subunit ribosomal protein S11
D      AArcS_2859 rpsL; Ribosomal protein S12	K02950 RP-S12; small subunit ribosomal protein S12
D      AArcS_0684 rpsM; Ribosomal protein S13	K02952 RP-S13; small subunit ribosomal protein S13
D      AArcS_0409 rpsN; Ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      AArcS_1145 rpsN2; Ribosomal protein S14	K02954 RP-S14; small subunit ribosomal protein S14
D      AArcS_2030 rpsO; Ribosomal protein S15P	K02956 RP-S15; small subunit ribosomal protein S15
D      AArcS_1150 rpsQ; Ribosomal protein S17	K02961 RP-S17; small subunit ribosomal protein S17
D      AArcS_1155 rpsS; Ribosomal protein S19	K02965 RP-S19; small subunit ribosomal protein S19
D      AArcS_0948 rplA; Ribosomal protein L1	K02863 RP-L1; large subunit ribosomal protein L1
D      AArcS_1156 rplB; Ribosomal protein L2	K02886 RP-L2; large subunit ribosomal protein L2
D      AArcS_1159 rplC; Ribosomal protein L3	K02906 RP-L3; large subunit ribosomal protein L3
D      AArcS_1146 rplE; Ribosomal protein L5	K02931 RP-L5; large subunit ribosomal protein L5
D      AArcS_1143 rplF; Ribosomal protein L6P	K02933 RP-L6; large subunit ribosomal protein L6
D      AArcS_0947 rplJ; Ribosomal protein L10	K02864 RP-L10; large subunit ribosomal protein L10
D      AArcS_0950 rplK; Ribosomal protein L11	K02867 RP-L11; large subunit ribosomal protein L11
D      AArcS_0678 rplM; Ribosomal protein L13	K02871 RP-L13; large subunit ribosomal protein L13
D      AArcS_1149 rplN; Ribosomal protein L14	K02874 RP-L14; large subunit ribosomal protein L14
D      AArcS_1137 rplO; Ribosomal protein L15	K02876 RP-L15; large subunit ribosomal protein L15
D      AArcS_1140 rplR; Ribosomal protein L18	K02881 RP-L18; large subunit ribosomal protein L18
D      AArcS_1154 rplV; Ribosomal protein L22	K02890 RP-L22; large subunit ribosomal protein L22
D      AArcS_1157 rplW; Ribosomal protein L23	K02892 RP-L23; large subunit ribosomal protein L23
D      AArcS_1148 rplX; Ribosomal protein L24	K02895 RP-L24; large subunit ribosomal protein L24
D      AArcS_1152 rpmC; Ribosomal protein L29	K02904 RP-L29; large subunit ribosomal protein L29
D      AArcS_1138 rpmD; Ribosomal protein L30	K02907 RP-L30; large subunit ribosomal protein L30
D      AArcS_0946 rpp1a; Ribosomal protein L12E/L44/L45/RPP1/RPP2	K02869 RP-L12; large subunit ribosomal protein L12
D      AArcS_0258 rpl20a; Ribosomal protein L20A (L18A)	K02944 RP-LX; large subunit ribosomal protein LX
D      AArcS_0204 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
D      AArcS_0201 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      AArcS_0203 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
C    03009 Ribosome biogenesis [BR:hara03009]
D      AArcS_1532 sik1; RNA processing factor Prp31, contains Nop domain	K14564 NOP56; nucleolar protein 56
D      AArcS_1865 nop10; rRNA maturation protein Nop10, contains Zn-ribbon domain	K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D      AArcS_3095 krr1; rRNA processing protein Krr1/Pno1, contains KH domain	K06961 KRR1; ribosomal RNA assembly protein
D      AArcS_0157 rio1; Serine/threonine protein kinase involved in cellcycle control	K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D      AArcS_2164 rio2; RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D      AArcS_1389 fap7; Broad-specificity NMP kinase	K18532 AK6; adenylate kinase [EC:2.7.4.3]
D      AArcS_0036 tsr3; Ribosome biogenesis protein Tsr3	K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D      AArcS_2517 rli1; Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains	K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
D      AArcS_0245 nog1; GTP-binding protein, GTP1/Obg family	K06943 NOG1; nucleolar GTP-binding protein
D      AArcS_1151 pop4; RNase P/RNase MRP subunit p29	K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D      AArcS_1022 pop5; RNase P/RNase MRP subunit POP5	K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D      AArcS_1024 rpp1; RNase P/RNase MRP subunit p30	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_2306 hypothetical protein	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_0256 tif6; Translation initiation factor 6 (eIF-6)	K03264 EIF6; translation initiation factor 6
D      AArcS_0375 nmd3; NMD protein affecting ribosome stability and mRNA decay	K07562 NMD3; 60S ribosomal export protein NMD3
D      AArcS_1749 sdo1; Ribosome maturation protein Sdo1	K14574 SDO1; ribosome maturation protein SDO1
D      AArcS_0998 cdc481; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_2332 cdc483; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_3176 GTPase SAR1 or related small G protein	K03595 era; GTPase
D      AArcS_1531 nop1; Fibrillarin-like rRNA methylase	K04795 flpA; fibrillarin-like pre-rRNA processing protein
D      AArcS_1059 rpl7Ae; Ribosomal protein L7AE	K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D      AArcS_1259 gar1; RNA-binding protein involved in rRNA processing	K07569 gar1; RNA-binding protein
D      AArcS_2858 nusA; Transcription elongation factor	K02600 nusA; transcription termination/antitermination protein NusA
D      AArcS_1503 rsmA; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1	K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D      AArcS_3078 ftsJ; 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D      AArcS_2646 rimI5; Acetyltransferase (GNAT) family	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      AArcS_2713 rimI6; Acetyltransferase (GNAT) family	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D      AArcS_0751 rimK; Glutathione synthase/glutaminyl transferase/alpha-L-glutamate ligase	K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D      AArcS_0602 ycaO; Ribosomal protein S12 methylthiotransferase accessory factor YcaO	K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D      AArcS_1777 hflX; GTP-binding protein protease modulator	K03665 hflX; GTPase
D      AArcS_3167 sua5; tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      AArcS_1847 RNA-binding protein containing KH domain	K07574 yhbY; RNA-binding protein
D      AArcS_2249 gtp1; Ribosome-binding ATPase YchF, GTP1/OBG family	K06942 ychF; ribosome-binding ATPase
D      AArcS_2651 gtp12; Ribosome-binding ATPase YchF, GTP1/OBG family	K06942 ychF; ribosome-binding ATPase
D      AArcS_3014 cafA; Ribonuclease G and E	K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
C    03016 Transfer RNA biogenesis [BR:hara03016]
D      AArcS_1151 pop4; RNase P/RNase MRP subunit p29	K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D      AArcS_1022 pop5; RNase P/RNase MRP subunit POP5	K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D      AArcS_1024 rpp1; RNase P/RNase MRP subunit p30	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_2306 hypothetical protein	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_1846 rpr2; RNase P subunit RPR2	K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D      AArcS_0162 rnz; Ribonuclease Z, beta-lactamase superfamily hydrolase	K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D      AArcS_0849 rtcB; RNA 3'-P ligase, RtcB family protein	K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D      AArcS_0687 SHS2 domain protein implicated in nucleic acid metabolism	K24956 ZBTB8OS; protein archease
D      AArcS_1097 gtpbp1; GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2796 tef1; Translation elongation factor EF-1 alpha, GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_1327 glnS; Glutamyl-or glutaminyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      AArcS_2475 proS; Prolyl-tRNA synthetase	K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D      AArcS_3129 ileS; Isoleucyl-tRNA synthetase	K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D      AArcS_3101 leuS; Leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      AArcS_2640 metG; Methionyl-tRNA synthetase	K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D      AArcS_3017 argS; Arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      AArcS_0356 alaS; Alanyl-tRNA synthetase	K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D      AArcS_0119 grs1; Glycyl-tRNA synthetase (class II)	K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D      AArcS_0437 thrS; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_2993 thrS2; Threonyl-tRNA synthetase	K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D      AArcS_2486 serS; Seryl-tRNA synthetase	K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D      AArcS_0851 cysS; Cysteinyl-tRNA synthetase	K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D      AArcS_2723 valS; Valyl-tRNA synthetase	K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D      AArcS_0176 hisS; Histidyl-tRNA synthetase	K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D      AArcS_0196 pheS; Phenylalanyl-tRNA synthetase alpha subunit	K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D      AArcS_0197 pheT; Phenylalanyl-tRNA synthetase beta subunit	K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D      AArcS_1379 tyrS; Tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      AArcS_0192 trpS; Tryptophanyl-tRNA synthetase	K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D      AArcS_2117 gek1; D-aminoacyl-tRNA deacylase, involved in ethanol tolerance	K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D      AArcS_3126 hit2; HIT family hydrolase	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      AArcS_1094 miaB; 2-methylthioadenine synthetase	K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
D      AArcS_3022 trm1; N2,N2-dimethylguanosine tRNA methyltransferase	K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D      AArcS_0521 trm5; Wybutosine (yW) biosynthesis enzyme, Trm5 methyltransferase	K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D      AArcS_2445 gcd14; tRNA(1-methyladenosine) methyltransferase	K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D      AArcS_1515 SAM-dependent methyltransferase	K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D      AArcS_0241 tyw1; Wybutosine (yW) biosynthesis enzyme, Fe-S oxidoreductase	K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D      AArcS_0374 tyw2; Wybutosine (yW) biosynthesis enzyme, TYW2 transferase	K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D      AArcS_0411 truA; Pseudouridylate synthase	K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D      AArcS_1121 truB; Pseudouridine synthase	K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D      AArcS_1975 truD; tRNA(Glu) U13 pseudouridine synthase TruD	K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D      AArcS_2779 pus10; tRNA U54 and U55 pseudouridine synthase Pus10	K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D      AArcS_0822 elp3; Histone acetyltransferase	K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D      AArcS_3167 sua5; tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D      AArcS_0327 cCA1; tRNA nucleotidyltransferase (CCA-adding enzyme)	K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
D      AArcS_0191 sen2; tRNA splicing endonuclease	K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D      AArcS_0225 ligT; 2'-5' RNA ligase	K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D      AArcS_0627 kptA; RNA:NAD 2'-phosphotransferase	K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D      AArcS_3051 lysS; Lysyl-tRNA synthetase, class I	K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D      AArcS_2635 asnS; Aspartyl/asparaginyl-tRNA synthetase	K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D      AArcS_2781 rsmE; RNA base methyltransferase family enzyme	K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D      AArcS_0165 trm11; tRNA G10 N-methylase Trm11	K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D      AArcS_0924 SpoU rRNA Methylase family enzyme	K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D      AArcS_2224 tusA; TusA-related sulfurtransferase	K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D      AArcS_1479 iscA; Fe-S cluster assembly iron-binding protein IscA	K13628 iscA; iron-sulfur cluster assembly protein
D      AArcS_2492 kae1p; Subunit of KEOPS complex, tRNA A37 threonylcarbamoyltransferase, contains a domain with ASKHA fold and RIO-type kinase (AP-endonuclease activity)	K15904 kae1-bud32; bifunctional N6-L-threonylcarbamoyladenine synthase / protein kinase Bud32 [EC:2.3.1.234 2.7.11.1]
D      AArcS_0144 cgi121; Subunit of KEOPS complex (Cgi121BUD32KAE1)	K09119 cgi121; KEOPS complex subunit Cgi121
D      AArcS_1980 pcc1; Subunit of KEOPS complex (Cgi121BUD32KAE1)	K09741 pcc1; KEOPS complex subunit Pcc1
D      AArcS_1619 queC; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      AArcS_1992 queC2; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D      AArcS_0050 queD; 6-pyruvoyl-tetrahydropterin synthase	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      AArcS_1617 queD2; 6-pyruvoyl-tetrahydropterin synthase	K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D      AArcS_1618 nrdG; Organic radical activating enzyme	K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D      AArcS_1165 tgt; Queuine/archaeosine tRNA-ribosyltransferase	K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D      AArcS_1595 Queuine tRNA-ribosyltransferase, containing PUA domain	K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D      AArcS_1597 tgt2; Queuine/archaeosine tRNA-ribosyltransferase	K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D      AArcS_1857 thiI; tRNA S(4)U 4-thiouridine synthase	K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D      AArcS_2537 tiaS; tRNA(Ile2) 2-agmatinylcytidine synthetase	K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D      AArcS_1060 tmcA; tRNA(Met) C34 N-acetyltransferase TmcA	K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D      AArcS_2354 vacB; Exoribonuclease R	K12573 rnr; ribonuclease R [EC:3.1.13.1]
D      AArcS_0078 vapC; PIN domain containing protein	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D      AArcS_2930 vapC6; PIN domain containing protein	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C    03012 Translation factors [BR:hara03012]
D      AArcS_0158 infA; Translation initiation factor 1 (IF-1)	K03236 EIF1A; translation initiation factor 1A
D      AArcS_1890 infA2; Translation initiation factor 1 (IF-1)	K03236 EIF1A; translation initiation factor 1A
D      AArcS_2523 sui1; Translation initiation factor 1 (eIF-1/SUI1)	K03113 EIF1; translation initiation factor 1
D      AArcS_1866 sui2; Translation initiation factor 2, alpha subunit (eIF-2alpha)	K03237 EIF2S1; translation initiation factor 2 subunit 1
D      AArcS_0650 gcd7; Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	K03238 EIF2S2; translation initiation factor 2 subunit 2
D      AArcS_2286 gcd72; Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	K03238 EIF2S2; translation initiation factor 2 subunit 2
D      AArcS_2500 gcd11; Translation initiation factor 2, gamma subunit eIF-2 gamma, GTPase	K03242 EIF2S3; translation initiation factor 2 subunit 3
D      AArcS_0623 gcd2; Translation initiation factor 2B subunit, eIF-2Balpha/beta/delta family	K03680 EIF2B4; translation initiation factor eIF-2B subunit delta
D      AArcS_1249 gcd23; Translation initiation factor 2B subunit, eIF-2Balpha/beta/delta family	K03680 EIF2B4; translation initiation factor eIF-2B subunit delta
D      AArcS_2344 efp; Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	K03263 EIF5A; translation initiation factor 5A
D      AArcS_2335 infB; Translation initiation factor 2 (IF-2)	K03243 EIF5B; translation initiation factor 5B
D      AArcS_0256 tif6; Translation initiation factor 6 (eIF-6)	K03264 EIF6; translation initiation factor 6
D      AArcS_1097 gtpbp1; GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2796 tef1; Translation elongation factor EF-1 alpha, GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_0648 efb1; Translation elongation factor EF-1beta	K03232 EEF1B; elongation factor 1-beta
D      AArcS_2791 fusA; Translation elongation factor G, EF-G (GTPase)	K03234 EEF2; elongation factor 2
D      AArcS_0695 dph2; Diphthamide synthase subunit DPH2	K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108]
D      AArcS_2353 dph6; Diphthamide synthase (EF-2-diphthine--ammonia ligase)	K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14]
D      AArcS_3019 eRF12; Peptide chain release factor eRF1	K03265 ETF1; peptide chain release factor subunit 1
D      AArcS_1501 hemK; Methylase of polypeptide chain release factors	K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D      AArcS_1974 pth2; Peptidyl-tRNA hydrolase	K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]
C    03110 Chaperones and folding catalysts [BR:hara03110]
D      AArcS_1723 dnaK; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2217 dnaK2; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2605 groEL; Chaperonin GroEL, HSP60 family	K22447 cct; archaeal chaperonin
D      AArcS_2914 groEL2; Chaperonin GroEL, HSP60 family	K22447 cct; archaeal chaperonin
D      AArcS_3097 groEL3; Chaperonin GroEL, HSP60 family	K22447 cct; archaeal chaperonin
D      AArcS_1044 dnaJ3; DnaJ-class molecular chaperone	K03686 dnaJ; molecular chaperone DnaJ
D      AArcS_1722 grpE; Molecular chaperone GrpE (heat shock protein)	K03687 GRPE; molecular chaperone GrpE
D      AArcS_2218 grpE2; Molecular chaperone GrpE (heat shock protein)	K03687 GRPE; molecular chaperone GrpE
D      AArcS_0304 ibpA; Molecular chaperone (HSP20 family)	K13993 HSP20; HSP20 family protein
D      AArcS_0752 ibpA2; Molecular chaperone (HSP20 family)	K13993 HSP20; HSP20 family protein
D      AArcS_0259 gim5; putative prefoldin, molecular chaperone implicated in de novo protein folding	K04797 pfdA; prefoldin alpha subunit
D      AArcS_1981 gimC; Prefoldin, chaperonin cofactor	K04798 pfdB; prefoldin beta subunit
D      AArcS_0638 torD; putative component of anaerobic dehydrogenase	K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D      AArcS_0993 torD2; putative component of anaerobic dehydrogenase	K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D      AArcS_0205 aprE; Subtilisin-like serine protease	K01342 aprE; subtilisin [EC:3.4.21.62]
D      AArcS_0368 ppiB; Peptidyl-prolyl cis-trans isomerase (rotamase) -cyclophilin family	K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D      AArcS_0875 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase 2	K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D      AArcS_1332 trxA6; Thiol-disulfide isomerase or thioredoxin	K03671 TXN; thioredoxin
D      AArcS_2235 trxA7; Thiol-disulfide isomerase or thioredoxin	K03671 TXN; thioredoxin
D      AArcS_2388 trxA9; Thiol-disulfide isomerase or thioredoxin	K03671 TXN; thioredoxin
D      AArcS_2958 Glutaredoxin-related protein	K07390 grxD; monothiol glutaredoxin
C    04131 Membrane trafficking [BR:hara04131]
D      AArcS_1056 ndk; Nucleoside diphosphate kinase	K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D      AArcS_0998 cdc481; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_2332 cdc483; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_0028 arsA; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_2582 arsA2; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_2593 sss1; Preprotein translocase subunit Sss1	K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D      AArcS_0754 asd; Aspartate-semialdehyde dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      AArcS_2363 pykA2; Phosphohistidine swiveling domain of PEP-utilizing enzymes	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      AArcS_1097 gtpbp1; GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2796 tef1; Translation elongation factor EF-1 alpha, GTPase	K03231 EEF1A; elongation factor 1-alpha
C    04121 Ubiquitin system [BR:hara04121]
D      AArcS_0252 rpl40e; Ribosomal protein L40E	K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
C    03051 Proteasome [BR:hara03051]
D      AArcS_1021 pre1; 20S proteasome, alpha subunit	K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D      AArcS_1373 pre12; 20S proteasome, beta subunit	K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D      AArcS_0423 rpt1; ATP-dependent 26S proteasome regulatory subunit	K03420 psmR; proteasome regulatory subunit
D      AArcS_2026 rpt12; ATP-dependent 26S proteasome regulatory subunit	K03420 psmR; proteasome regulatory subunit
C    03032 DNA replication proteins [BR:hara03032]
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_2568 rnhA2; Ribonuclease HI	K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_1221 UvrD/REP helicase	K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D      AArcS_1865 nop10; rRNA maturation protein Nop10, contains Zn-ribbon domain	K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D      AArcS_2714 dnaG; DNA primase (bacterial type)	K02316 dnaG; DNA primase [EC:2.7.7.101]
D      AArcS_0001 cDC6; Cdc6-related protein, AAA superfamily ATPase	K10725 cdc6A; archaeal cell division control protein 6
D      AArcS_0628 cDC6-5; Cdc6-related protein, AAA superfamily ATPase	K10725 cdc6A; archaeal cell division control protein 6
D      AArcS_1977 cDC6-6; Cdc6-related protein, AAA superfamily ATPase	K10725 cdc6A; archaeal cell division control protein 6
D      AArcS_3087 cDC6-7; Cdc6-related protein, AAA superfamily ATPase	K10725 cdc6A; archaeal cell division control protein 6
D      AArcS_0066 DNA endonuclease related to intein-encoded endonuclease	K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D      AArcS_1524 pri1; Eukaryotic-type DNA primase, catalytic (small) subunit	K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D      AArcS_3073 pri2; Eukaryotic-type DNA primase, large subunit	K18882 priL; DNA primase large subunit
D      AArcS_1525 DNA replication initiation complex subunit, GINS15 family	K09723 ginS; DNA replication factor GINS
D      AArcS_0431 rnhB; Ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      AArcS_0452 polB2; DNA polymerase PolB2, inactivated	K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D      AArcS_0861 polB3; DNA polymerase PolB3	K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D      AArcS_0108 Archaeal DNA polymerase II, large subunit	K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D      AArcS_0003 hys2; Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B	K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D      AArcS_2416 holB3; ATPase involved in DNA replication HolB, large subunit	K04800 rfcL; replication factor C large subunit
D      AArcS_0152 holB; ATPase involved in DNA replication HolB, small subunit	K04801 rfcS; replication factor C small subunit
D      AArcS_0163 holB2; ATPase involved in DNA replication HolB, small subunit	K04801 rfcS; replication factor C small subunit
D      AArcS_1450 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      AArcS_1451 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      AArcS_1453 DNA topoisomerase VI, subunit A	K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D      AArcS_0190 nucS; RecB family endonuclease acting on branched DNA substrates	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      AArcS_2055 Topoisomerase DNA binding C4 zinc finger fused to uncharacterized N-terminal domain often associated with RecB-like endonuclease	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C    03036 Chromosome and associated proteins [BR:hara03036]
D      AArcS_1160 mth1; RNA methyltransferase, SPOUT superfamily	K09142 SPOUT1; methyltransferase [EC:2.1.1.-]
D      AArcS_0325 hht1; Histones H3 and H4	K24450 hmf; DNA-binding protein
D      AArcS_1859 dps; DNA-binding ferritin-like protein (oxidative damage protectant)	K04047 dps; starvation-inducible DNA-binding protein
D      AArcS_2050 smc; Chromosome segregation ATPase	K03529 smc; chromosome segregation protein
D      AArcS_2049 scpA; Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	K05896 scpA; segregation and condensation protein A
D      AArcS_2311 ftsZ; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_2595 ftsZ4; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_0071 flhG; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
D      AArcS_0873 putative membrane protein	K03609 minD; septum site-determining protein MinD
D      AArcS_2268 flhG2; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
D      AArcS_3018 flhG4; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
D      AArcS_0194 mrp; Mrp family protein, ATPase, contains iron-sulfurcluster	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      AArcS_1507 mrp2; Mrp family protein, ATPase, contains iron-sulfurcluster	K03593 mrp; ATP-binding protein involved in chromosome partitioning
C    03400 DNA repair and recombination proteins [BR:hara03400]
D      AArcS_2617 ada; Methylated DNA-protein cysteine methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D      AArcS_0106 phrB; Deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D      AArcS_1395 phrB2; Deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D      AArcS_1426 mutY; A/G-specific DNA glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D      AArcS_0850 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase	K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D      AArcS_1920 nth; EndoIII-related endonuclease	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      AArcS_2343 nth2; EndoIII-related endonuclease	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D      AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein)	K04802 PCNA; proliferating cell nuclear antigen
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D      AArcS_1457 cDC9; ATP-dependent DNA ligase	K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D      AArcS_0853 xpb; ssDNA-dependent ATPase, helicase superfamily II	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D      AArcS_0089 dinG; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0148 dinG2; Rad3-related DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D      AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein	K07466 RFA1; replication factor A1
D      AArcS_0636 NUDIX family hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D      AArcS_2126 dcd2; Deoxycytidine deaminase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D      AArcS_1825 Uncharacterized protein	K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D      AArcS_1510 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_2482 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_3127 Uracil-DNA glycosylase	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D      AArcS_1942 alkA2; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D      AArcS_2257 nfo; Endonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D      AArcS_2580 nfi; Deoxyinosine 3'endonuclease (endonuclease V)	K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D      AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D      AArcS_0116 lig; NAD-dependent DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D      AArcS_2909 uvrA; Excinuclease ABC subunit A, ATPase	K03701 uvrA; excinuclease ABC subunit A
D      AArcS_0076 uvrB; Excinuclease ABC subunit B, helicase	K03702 uvrB; excinuclease ABC subunit B
D      AArcS_3133 uvrC; Excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C
D      AArcS_1787 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_3005 uvrD; Superfamily I DNA and RNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D      AArcS_1755 mutS; Mismatch repair ATPase (MutS family)	K03555 mutS; DNA mismatch repair protein MutS
D      AArcS_2157 mutS2; Mismatch repair ATPase (MutS family)	K03555 mutS; DNA mismatch repair protein MutS
D      AArcS_2144 mutS2-1; DNA structure-specific ATPase involved in suppression of recombination, MutS family	K07456 mutS2; DNA mismatch repair protein MutS2
D      AArcS_3086 mutS2-2; DNA structure-specific ATPase involved in suppression of recombination, MutS family	K07456 mutS2; DNA mismatch repair protein MutS2
D      AArcS_2153 mutL2; DNA mismatch repair enzyme (predicted ATPase)	K03572 mutL; DNA mismatch repair protein MutL
D      AArcS_1624 xseA; Exonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D      AArcS_1625 hypothetical protein	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D      AArcS_2023 sbcC; ATPase involved in DNA repair, SbcC	K03546 sbcC; DNA repair protein SbcC/Rad50
D      AArcS_1659 sbcD; DNA repair exonuclease, SbcD	K03547 sbcD; DNA repair protein SbcD/Mre11
D      AArcS_2024 sbcD2; DNA repair exonuclease, SbcD	K03547 sbcD; DNA repair protein SbcD/Mre11
D      AArcS_2880 cas1; CRISPR-associated protein Cas1	K15342 cas1; CRISP-associated protein Cas1
D      AArcS_0290 recA; RecA/RadA recombinase	K04483 radA; DNA repair protein RadA
D      AArcS_2732 recA2; RecA/RadA recombinase	K04484 radB; DNA repair protein RadB
D      AArcS_3069 Holliday junction resolvase, archaeal type	K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D      AArcS_0032 bRR2; Replicative superfamily II helicase	K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D      AArcS_0143 bRR21; Replicative superfamily II helicase	K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D      AArcS_1450 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D      AArcS_1451 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D      AArcS_0190 nucS; RecB family endonuclease acting on branched DNA substrates	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      AArcS_2055 Topoisomerase DNA binding C4 zinc finger fused to uncharacterized N-terminal domain often associated with RecB-like endonuclease	K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D      AArcS_0985 dpo4; Family Y DNA polymerase	K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
D      AArcS_2577 pol4; DNA polymerase IV (family X)	K02347 polX; DNA polymerase (family X)
D      AArcS_0708 lhr; Lhr-like helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D      AArcS_0872 lhr2; Lhr-like helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D      AArcS_1604 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D      AArcS_2932 nrdA; Ribonucleotide reductase, alpha subunit	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D      AArcS_2570 Protein, predicted to be involved in DNA repair	K22585 nreA; DNA repair protein NreA
C    03029 Mitochondrial biogenesis [BR:hara03029]
D      AArcS_1151 pop4; RNase P/RNase MRP subunit p29	K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D      AArcS_1022 pop5; RNase P/RNase MRP subunit POP5	K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D      AArcS_1024 rpp1; RNase P/RNase MRP subunit p30	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_2306 hypothetical protein	K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D      AArcS_3176 GTPase SAR1 or related small G protein	K03595 era; GTPase
D      AArcS_1379 tyrS; Tyrosyl-tRNA synthetase	K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D      AArcS_3101 leuS; Leucyl-tRNA synthetase	K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D      AArcS_0119 grs1; Glycyl-tRNA synthetase (class II)	K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D      AArcS_3017 argS; Arginyl-tRNA synthetase	K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D      AArcS_0900 gatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D      AArcS_2053 gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D      AArcS_0901 gatC; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D      AArcS_1723 dnaK; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2217 dnaK2; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_1722 grpE; Molecular chaperone GrpE (heat shock protein)	K03687 GRPE; molecular chaperone GrpE
D      AArcS_2218 grpE2; Molecular chaperone GrpE (heat shock protein)	K03687 GRPE; molecular chaperone GrpE
D      AArcS_1044 dnaJ3; DnaJ-class molecular chaperone	K03686 dnaJ; molecular chaperone DnaJ
D      AArcS_2958 Glutaredoxin-related protein	K07390 grxD; monothiol glutaredoxin
D      AArcS_0194 mrp; Mrp family protein, ATPase, contains iron-sulfurcluster	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      AArcS_1507 mrp2; Mrp family protein, ATPase, contains iron-sulfurcluster	K03593 mrp; ATP-binding protein involved in chromosome partitioning
D      AArcS_0785 cyoE; Polyprenyltransferase (cytochrome oxidase assembly factor)	K02257 COX10; heme o synthase [EC:2.5.1.141]
D      AArcS_2395 ctaA; Uncharacterized protein	K02259 COX15; heme a synthase [EC:1.17.99.9]
D      AArcS_0613 sco1; Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	K07152 SCO1; protein SCO1
D      AArcS_0957 sco12; Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	K07152 SCO1; protein SCO1
B
B  09183 Protein families: signaling and cellular processes
C    02000 Transporters [BR:hara02000]
D      AArcS_2742 mdlB; ABC-type multidrug transport system, ATPase and permease component	K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D      AArcS_1233 modA; ABC-type molybdate transport system, periplasmiccomponent	K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D      AArcS_1232 cysU; ABC-type sulfate transport system, permease component	K15496 wtpB; molybdate/tungstate transport system permease protein
D      AArcS_2279 tupB; ABC-type tungstate transport system, permease component	K05772 tupA; tungstate transport system substrate-binding protein
D      AArcS_2278 tupA; ABC-type tungstate transport system, periplasmiccomponent	K05773 tupB; tungstate transport system permease protein
D      AArcS_2277 glnQ2; ABC-type polar amino acid transport system, ATPase component	K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D      AArcS_0634 tauB; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_2813 tauB2; ABC-type nitrate/sulfonate/bicarbonate transportsystem, ATPase component	K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D      AArcS_0666 afuA; ABC-type Fe3+ transport system, periplasmic component	K02012 afuA; iron(III) transport system substrate-binding protein
D      AArcS_0665 thiP3; ABC-type Fe3+ transport system, permease component	K02011 afuB; iron(III) transport system permease protein
D      AArcS_0664 potA3; ABC-type spermidine/putrescine transport system,ATPase component	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      AArcS_2803 potA6; ABC-type spermidine/putrescine transport system,ATPase component	K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D      AArcS_0569 potD; Spermidine/putrescine-binding periplasmic protein	K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D      AArcS_0566 thiP; ABC-type Fe3+ transport system, permease component	K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D      AArcS_0567 thiP2; ABC-type Fe3+ transport system, permease component	K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D      AArcS_0568 potA2; ABC-type spermidine/putrescine transport system,ATPase component	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      AArcS_1231 potA4; ABC-type spermidine/putrescine transport system,ATPase component	K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D      AArcS_0632 tauA; ABC-type nitrate/sulfonate/bicarbonate transportsystem, periplasmic component	K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D      AArcS_2812 tauA3; ABC-type nitrate/sulfonate/bicarbonate transportsystem, periplasmic component	K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D      AArcS_0633 tauC; ABC-type nitrate/sulfonate/bicarbonate transportsystem, permease component	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      AArcS_2814 tauC2; ABC-type nitrate/sulfonate/bicarbonate transportsystem, permease component	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      AArcS_2819 tauC3; ABC-type nitrate/sulfonate/bicarbonate transportsystem, permease component	K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D      AArcS_2087 ugpB2; ABC-type sugar transport system, periplasmic component	K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D      AArcS_0419 potA; ABC-type spermidine/putrescine transport system,ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_2085 potA5; ABC-type spermidine/putrescine transport system,ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_2966 malK; ABC-type sugar transport system, ATPase component	K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_0420 malE; Maltose-binding periplasmic protein	K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D      AArcS_1361 malE2; Maltose-binding periplasmic protein	K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D      AArcS_0421 ugpA; ABC-type sugar transport system, permease component	K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D      AArcS_0422 malG; ABC-type maltose transport system, permease component	K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D      AArcS_2963 ugpB3; ABC-type sugar transport system, periplasmic component	K10236 thuE; trehalose/maltose transport system substrate-binding protein
D      AArcS_2964 ugpA3; ABC-type sugar transport system, permease component	K10237 thuF; trehalose/maltose transport system permease protein
D      AArcS_2965 ugpE2; ABC-type sugar transport system, permease component	K10238 thuG; trehalose/maltose transport system permease protein
D      AArcS_2193 rbsB; ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain	K10439 rbsB; ribose transport system substrate-binding protein
D      AArcS_2324 med; putative ABC-type transport system, periplasmic component/surface lipoprotein	K07335 bmpA; basic membrane protein A and related proteins
D      AArcS_2322 ABC-type uncharacterized transport system, permease component	K23535 nupB; general nucleoside transport system permease protein
D      AArcS_2321 putative ABC-type transport system, permease component	K23536 nupC; general nucleoside transport system permease protein
D      AArcS_2323 ABC-type uncharacterized transport system, ATPase component	K23537 nupA; general nucleoside transport system ATP-binding protein
D      AArcS_2088 ugpA2; ABC-type sugar transport system, permease component	K02025 ABC.MS.P; multiple sugar transport system permease protein
D      AArcS_2089 ugpE; ABC-type sugar transport system, permease component	K02026 ABC.MS.P1; multiple sugar transport system permease protein
D      AArcS_2192 araH; Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component	K02057 ABC.SS.P; simple sugar transport system permease protein
D      AArcS_2191 ABC-type uncharacterized transport system, ATPase component	K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D      AArcS_0094 pstS; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2675 pstS2; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_2984 pstS3; ABC-type phosphate transport system, periplasmiccomponent	K02040 pstS; phosphate transport system substrate-binding protein
D      AArcS_0095 pstC; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_2674 pstC2; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_2985 pstC3; ABC-type phosphate transport system, permease component	K02037 pstC; phosphate transport system permease protein
D      AArcS_0096 pstA; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_2673 pstA2; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_2986 pstA3; ABC-type phosphate transport system, permease component	K02038 pstA; phosphate transport system permease protein
D      AArcS_0097 pstB; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_2672 pstB2; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_2987 pstB3; ABC-type phosphate transport system, ATPase component	K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D      AArcS_1215 phnD; ABC-type phosphate/phosphonate transport system,periplasmic component	K02044 phnD; phosphonate transport system substrate-binding protein
D      AArcS_2369 phnD2; ABC-type phosphate/phosphonate transport system,periplasmic component	K02044 phnD; phosphonate transport system substrate-binding protein
D      AArcS_1217 phnE; ABC-type phosphate/phosphonate transport system,permease component	K02042 phnE; phosphonate transport system permease protein
D      AArcS_2367 phnE2; ABC-type phosphate/phosphonate transport system,permease component	K02042 phnE; phosphonate transport system permease protein
D      AArcS_1216 phnC; ABC-type phosphate/phosphonate transport system,ATPase component	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      AArcS_2368 phnC2; ABC-type phosphate/phosphonate transport system,ATPase component	K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D      AArcS_2149 hisJ; ABC-type amino acid transport/signal transduction system, periplasmic component/domain	K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D      AArcS_2146 hisM; ABC-type amino acid transport system, permease component	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      AArcS_2148 hisM2; ABC-type amino acid transport system, permease component	K02029 ABC.PA.P; polar amino acid transport system permease protein
D      AArcS_2147 glnQ; ABC-type polar amino acid transport system, ATPase component	K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D      AArcS_1174 ugpB; ABC-type sugar transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1481 ddpA; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1880 livK2; ABC-type branched-chain amino acid transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1887 ddpA2; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_2180 ddpA3; ABC-type transport system, periplasmic component	K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D      AArcS_1175 dppB; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1879 dppB2; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1886 dppB3; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_2181 dppB4; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02033 ABC.PE.P; peptide/nickel transport system permease protein
D      AArcS_1176 dppC; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1878 dppC2; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1885 dppC3; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_2182 dppC4; ABC-type dipeptide/oligopeptide/nickel transportsystem, permease component	K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D      AArcS_1177 dppD; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1877 dppD2; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1884 dppD3; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_2183 dppD4; ABC-type dipeptide/oligopeptide/nickel transportsystem, ATPase component	K02031 ddpD; peptide/nickel transport system ATP-binding protein
D      AArcS_1178 appF; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_1876 appF2; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_1883 appF3; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_2184 appF4; ABC-type oligopeptide transport system, ATPase component	K02032 ddpF; peptide/nickel transport system ATP-binding protein
D      AArcS_0367 fepB; ABC-type Fe3+-hydroxamate transport system, periplasmic component	K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D      AArcS_2280 fepB3; ABC-type Fe3+-hydroxamate transport system, periplasmic component	K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D      AArcS_1261 fepB2; ABC-type Fe3+-hydroxamate transport system, periplasmic component	K25034 btuF; cobalamin transport system substrate-binding protein
D      AArcS_2281 fepB4; ABC-type Fe3+-hydroxamate transport system, periplasmic component	K25034 btuF; cobalamin transport system substrate-binding protein
D      AArcS_1262 fepD; ABC-type Fe3+-siderophore transport system, permease component	K25027 btuC; cobalamin transport system permease protein
D      AArcS_1263 fepC; ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component	K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D      AArcS_0578 lraI; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_1009 lraI2; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_1111 lraI3; ABC-type metal ion transport system, periplasmiccomponent/surface adhesin	K09815 znuA; zinc transport system substrate-binding protein
D      AArcS_0577 znuB; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1011 znuB2; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1113 znuB3; ABC-type Mn2+/Zn2+ transport system, permease component	K09816 znuB; zinc transport system permease protein
D      AArcS_1010 znuC; ABC-type Mn/Zn transport system, ATPase component	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      AArcS_1112 znuC2; ABC-type Mn/Zn transport system, ATPase component	K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D      AArcS_3170 bioY; Uncharacterized protein	K03523 bioY; biotin transport system substrate-specific component
D      AArcS_3172 ecfT; Energy-coupling factor transporter transmembrane protein EcfT	K16783 bioN; biotin transport system permease protein
D      AArcS_3171 ecfA2; Energy-coupling factor transporter ATP-binding protein EcfA2	K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D      AArcS_0789 ABC-2 family transporter	K19341 nosY; Cu-processing system permease protein
D      AArcS_0787 Lipoprotein NosD family	K07218 nosD; nitrous oxidase accessory protein
D      AArcS_0788 ccmA4; ABC-type multidrug transport system, ATPase component	K19340 nosF; Cu-processing system ATP-binding protein
D      AArcS_1168 nosY3; ABC-type transport system involved in multi-copper enzyme maturation, permease component	K25147 berB; beta-exotoxin I transport system permease protein
D      AArcS_1169 ccmA5; ABC-type multidrug transport system, ATPase component	K25148 berA; beta-exotoxin I transport system ATP-binding protein
D      AArcS_0115 nosY; ABC-type transport system involved in multi-copper enzyme maturation, permease component	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      AArcS_0215 nosY2; ABC-type transport system involved in multi-copper enzyme maturation, permease component	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      AArcS_0527 ABC-type multidrug transport system, permease component	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      AArcS_1384 natB2; ABC-type Na+ efflux pump, permease component	K01992 ABC-2.P; ABC-2 type transport system permease protein
D      AArcS_0114 ccmA; ABC-type multidrug transport system, ATPase component	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      AArcS_0214 ccmA2; ABC-type multidrug transport system, ATPase component	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      AArcS_0526 ccmA3; ABC-type multidrug transport system, ATPase component	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      AArcS_1382 ccmA6; ABC-type multidrug transport system, ATPase component	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      AArcS_1537 ccmA7; ABC-type multidrug transport system, ATPase component	K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D      AArcS_0261 salY; ABC-type antimicrobial peptide transport system, permease component	K02004 ABC.CD.P; putative ABC transport system permease protein
D      AArcS_0262 salY2; ABC-type antimicrobial peptide transport system, permease component	K02004 ABC.CD.P; putative ABC transport system permease protein
D      AArcS_2452 salY3; ABC-type antimicrobial peptide transport system, permease component	K02004 ABC.CD.P; putative ABC transport system permease protein
D      AArcS_0263 salX; ABC-type antimicrobial peptide transport system,ATPase component	K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D      AArcS_2451 salX2; ABC-type antimicrobial peptide transport system,ATPase component	K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D      AArcS_1238 sufC; Cysteine desulfurase activator ATPase	K09013 sufC; Fe-S cluster assembly ATP-binding protein
D      AArcS_0173 norM; Na+-driven multidrug efflux pump	K26937 dinF; MATE family, multidrug efflux pump
D      AArcS_0175 norM2; Na+-driven multidrug efflux pump	K26937 dinF; MATE family, multidrug efflux pump
D      AArcS_0209 norM3; Na+-driven multidrug efflux pump	K26937 dinF; MATE family, multidrug efflux pump
D      AArcS_1331 norM4; Na+-driven multidrug efflux pump	K26937 dinF; MATE family, multidrug efflux pump
D      AArcS_0105 MFS family permease	K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D      AArcS_0530 MFS family permease	K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D      AArcS_1064 narK; Nitrate/nitrite transporter	K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D      AArcS_3105 narK2; Nitrate/nitrite transporter	K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D      AArcS_0223 ptsA; Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)	K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D      AArcS_0222 fruB; Phosphotransferase system HPr-related protein	K02784 ptsH; phosphocarrier protein HPr
D      AArcS_0221 ptsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D      AArcS_0220 fruA; Phosphotransferase system, fructose-specific IICcomponent	K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D      AArcS_0224 fruB2; Phosphotransferase system fructose-specific component IIB	K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D      AArcS_2210 dhaM; Phosphoenolpyruvate-protein phosphoryltransferase, PTS system IIA component	K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D      AArcS_2102 kch2; Kef-type K+ transport system, predicted NAD-binding component	K10716 kch; voltage-gated potassium channel
D      AArcS_3144 glnK; Nitrogen regulatory protein PII	K03320 amt; ammonium transporter, Amt family
D      AArcS_1721 vWFA domain containing protein	K07114 yfbK; Ca-activated chloride channel homolog
D      AArcS_1099 mgtE2; Permease, similar to cation transporter	K07244 K07244; mgtE-like transporter
D      AArcS_1100 mgtE22; Permease, similar to cation transporter	K07244 K07244; mgtE-like transporter
D      AArcS_1102 mgtE23; Permease, similar to cation transporter	K07244 K07244; mgtE-like transporter
D      AArcS_1103 mgtE24; Permease, similar to cation transporter	K07244 K07244; mgtE-like transporter
D      AArcS_1409 crcB; Integral membrane protein	K06199 crcB; fluoride exporter
D      AArcS_1410 crcB2; Integral membrane protein	K06199 crcB; fluoride exporter
D      AArcS_3049 tlyC; Hemolysins or related protein containing CBS domains	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      AArcS_3122 tlyC2; Hemolysins or related protein containing CBS domains	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      AArcS_0818 putative divalent heavy-metal cations transporter	K07238 TC.ZIP; zinc transporter, ZIP family
D      AArcS_2501 lldP; L-lactate permease	K03303 lutP; lactate permease
D      AArcS_0954 ecm27; Ca2+/Na+ antiporter	K07301 yrbG; cation:H+ antiporter
D      AArcS_0133 kefB3; Kef-type K+ transport system, membrane componentfused TrkA K+ transport system	K26735 KEA4_5_6; K+:H+ antiporter
D      AArcS_0127 khtT; K+/H+ antiporter YhaU, regulatory subunit KhtT	K07228 khtT; K+:H+ antiporter subunit KhtT
D      AArcS_0126 kefB; Kef-type K+ transport system, membrane componentfused TrkA K+ transport system	K26732 khtU; K+:H+ antiporter subunit KhtU
D      AArcS_0268 trkG; Trk-type K+ transport system, membrane component	K03498 trkH; trk/ktr system potassium uptake protein
D      AArcS_0248 trkA4; TrkA, K+ transport system, NAD-binding component	K03499 trkA; trk/ktr system potassium uptake protein
D      AArcS_0265 trkA5; TrkA, K+ transport system, NAD-binding component	K03499 trkA; trk/ktr system potassium uptake protein
D      AArcS_3025 trkA8; TrkA, K+ transport system, NAD-binding component	K03499 trkA; trk/ktr system potassium uptake protein
D      AArcS_3114 trkA9; TrkA, K+ transport system, NAD-binding component	K03499 trkA; trk/ktr system potassium uptake protein
D      AArcS_3116 trkA10; TrkA, K+ transport system, NAD-binding component	K03499 trkA; trk/ktr system potassium uptake protein
D      AArcS_0523 azgA; Xanthine/uracil/vitamin C permease, AzgA family	K06901 pbuG; adenine/guanine/hypoxanthine permease
D      AArcS_0028 arsA; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_2582 arsA2; Oxyanion-translocating ATPase	K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D      AArcS_1896 mnhB; Multisubunit Na+/H+ antiporter, MnhB subunit	K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D      AArcS_1897 mnhB2; Multisubunit Na+/H+ antiporter, MnhB subunit	K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D      AArcS_1895 mnhC; Multisubunit Na+/H+ antiporter, MnhC subunit	K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D      AArcS_1892 nuoM; NADH:ubiquinone oxidoreductase subunit 4 (chain M)	K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D      AArcS_1893 nuoM2; NADH:ubiquinone oxidoreductase subunit 4 (chain M)	K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D      AArcS_1894 hyfB; Multisubunit Na+/H+ antiporter, MnhD subunit	K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D      AArcS_1900 uspA24; Nucleotide-binding protein, UspA family	K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D      AArcS_1899 mnhF; Multisubunit Na+/H+ antiporter, MnhF subunit	K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D      AArcS_1898 mnhG; Multisubunit Na+/H+ antiporter, MnhG subunit	K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D      AArcS_2900 putative permease	K13936 mdcF; malonate transporter and related proteins
D      AArcS_1785 yhhQ; putative member of the PurR regulon	K09125 yhhQ; queuosine precursor transporter
D      AArcS_0990 bisC2; Anaerobic dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      AArcS_0641 bisC; Anaerobic dehydrogenase	K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D      AArcS_0149 tspO; Tryptophan-rich sensory protein	K05770 TSPO; translocator protein
C    02044 Secretion system [BR:hara02044]
D      AArcS_2411 flaB2; Archaeal flagellin	K07324 flaA; archaeal flagellin FlaA
D      AArcS_2072 flaB; Archaeal flagellin	K07325 flaB; archaeal flagellin FlaB
D      AArcS_2412 flaB3; Archaeal flagellin	K07325 flaB; archaeal flagellin FlaB
D      AArcS_2402 flaD; Archaellum protein D/E	K07328 flaE; archaeal flagellar protein FlaE
D      AArcS_2403 flaF; Archaellum protein F, flagellin of FlaG/FlaF family	K07329 flaF; archaeal flagellar protein FlaF
D      AArcS_2404 flaG; Archaellum protein G, flagellin of FlaG/FlaF family	K07330 flaG; archaeal flagellar protein FlaG
D      AArcS_2405 flaH; ATPase involved in biogenesis of archaellum	K07331 flaH; archaeal flagellar protein FlaH
D      AArcS_1513 virB11; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_2043 virB112; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_2406 virB114; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_1514 tadC; Pilus assembly protein TadC	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_2042 tadC2; Pilus assembly protein TadC	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_2407 flaJ2; Archaellum assembly protein J, TadC family	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_3162 flaK2; Peptidase A24A, prepilin type IV	K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D      AArcS_0865 comEC; Metal-dependent hydrolase of the beta-lactamase superfamily II	K02238 comEC; competence protein ComEC
D      AArcS_0429 secD; Preprotein translocase subunit SecD	K03072 secD; preprotein translocase subunit SecD
D      AArcS_0428 secF; Preprotein translocase subunit SecF	K03074 secF; preprotein translocase subunit SecF
D      AArcS_1136 secY; Preprotein translocase subunit SecY	K03076 secY; preprotein translocase subunit SecY
D      AArcS_0272 ffh; Signal recognition particle GTPase	K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D      AArcS_0260 ftsY; Signal recognition particle GTPase	K03110 ftsY; fused signal recognition particle receptor
D      AArcS_2593 sss1; Preprotein translocase subunit Sss1	K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D      AArcS_1260 sec65; Signal recognition particle 19 kDa protein	K03105 SRP19; signal recognition particle subunit SRP19
D      AArcS_1961 tatA; Sec-independent protein secretion pathway component	K03116 tatA; sec-independent protein translocase protein TatA
D      AArcS_3080 tatC; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
D      AArcS_3081 tatC2; Sec-independent protein secretion pathway component TatC	K03118 tatC; sec-independent protein translocase protein TatC
C    02042 Bacterial toxins [BR:hara02042]
D      AArcS_3049 tlyC; Hemolysins or related protein containing CBS domains	K03699 tlyC; magnesium and cobalt exporter, CNNM family
D      AArcS_3122 tlyC2; Hemolysins or related protein containing CBS domains	K03699 tlyC; magnesium and cobalt exporter, CNNM family
C    02022 Two-component system [BR:hara02022]
D      AArcS_1997 cheY7; Rec domain	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      AArcS_1995 cheY6; Rec domain	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      AArcS_1996 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
C    02035 Bacterial motility proteins [BR:hara02035]
D      AArcS_1997 cheY7; Rec domain	K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D      AArcS_1994 cheW; Chemotaxis signal transduction protein	K03408 cheW; purine-binding chemotaxis protein CheW
D      AArcS_1998 cheC; Chemotaxis protein CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      AArcS_1999 cheC2; Chemotaxis protein CheC, inhibitor of MCP methylation	K03410 cheC; chemotaxis protein CheC
D      AArcS_2000 cheD; Chemotaxis protein	K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D      AArcS_2001 cheR; Methylase of chemotaxis methyl-accepting protein	K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D      AArcS_1996 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D      AArcS_1995 cheY6; Rec domain	K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D      AArcS_1205 tar; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_2158 tar2; Methyl-accepting chemotaxis protein	K03406 mcp; methyl-accepting chemotaxis protein
D      AArcS_2411 flaB2; Archaeal flagellin	K07324 flaA; archaeal flagellin FlaA
D      AArcS_2072 flaB; Archaeal flagellin	K07325 flaB; archaeal flagellin FlaB
D      AArcS_2412 flaB3; Archaeal flagellin	K07325 flaB; archaeal flagellin FlaB
D      AArcS_2402 flaD; Archaellum protein D/E	K07328 flaE; archaeal flagellar protein FlaE
D      AArcS_2403 flaF; Archaellum protein F, flagellin of FlaG/FlaF family	K07329 flaF; archaeal flagellar protein FlaF
D      AArcS_2404 flaG; Archaellum protein G, flagellin of FlaG/FlaF family	K07330 flaG; archaeal flagellar protein FlaG
D      AArcS_2405 flaH; ATPase involved in biogenesis of archaellum	K07331 flaH; archaeal flagellar protein FlaH
D      AArcS_1513 virB11; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_2043 virB112; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_2406 virB114; ATPase involved in archaellum/pili biosynthesis	K07332 flaI; archaeal flagellar protein FlaI
D      AArcS_1514 tadC; Pilus assembly protein TadC	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_2042 tadC2; Pilus assembly protein TadC	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_2407 flaJ2; Archaellum assembly protein J, TadC family	K07333 flaJ; archaeal flagellar protein FlaJ
D      AArcS_3162 flaK2; Peptidase A24A, prepilin type IV	K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
C    03037 Cilium and associated proteins
C    04812 Cytoskeleton proteins [BR:hara04812]
D      AArcS_2311 ftsZ; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_2595 ftsZ4; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_2542 ftsZ2; Cell division GTPase	K22222 cetZ; tubulin-like protein CetZ
D      AArcS_2561 ftsZ3; Cell division GTPase	K22222 cetZ; tubulin-like protein CetZ
D      AArcS_0071 flhG; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
D      AArcS_0873 putative membrane protein	K03609 minD; septum site-determining protein MinD
D      AArcS_2268 flhG2; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
D      AArcS_3018 flhG4; FleN family ATPase involved in flagellar biosynthesis	K03609 minD; septum site-determining protein MinD
C    04147 Exosome [BR:hara04147]
D      AArcS_0674 eno; Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D      AArcS_0754 asd; Aspartate-semialdehyde dehydrogenase	K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D      AArcS_0755 pgk; 3-phosphoglycerate kinase	K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D      AArcS_2363 pykA2; Phosphohistidine swiveling domain of PEP-utilizing enzymes	K00873 PK; pyruvate kinase [EC:2.7.1.40]
D      AArcS_0368 ppiB; Peptidyl-prolyl cis-trans isomerase (rotamase) -cyclophilin family	K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D      AArcS_1097 gtpbp1; GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2796 tef1; Translation elongation factor EF-1 alpha, GTPase	K03231 EEF1A; elongation factor 1-alpha
D      AArcS_2791 fusA; Translation elongation factor G, EF-G (GTPase)	K03234 EEF2; elongation factor 2
D      AArcS_1723 dnaK; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_2217 dnaK2; Chaperone DnaK (HSP70)	K04043 dnaK; molecular chaperone DnaK
D      AArcS_0748 pgi; Glucose-6-phosphate isomerase	K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D      AArcS_1423 fen1; 5'-3' exonuclease	K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D      AArcS_1324 guaB; IMP dehydrogenase/GMP reductase	K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D      AArcS_0998 cdc481; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_2332 cdc483; ATPase of the AAA+ class, CDC48 family	K13525 VCP; transitional endoplasmic reticulum ATPase
D      AArcS_3126 hit2; HIT family hydrolase	K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D      AArcS_2489 faa1; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_2490 faa12; Long-chain acyl-CoA synthetase (AMP-forming)	K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D      AArcS_0621 paaJ; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_1554 paaJ3; Acetyl-CoA acetyltransferase	K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D      AArcS_0174 sam1; S-adenosylhomocysteine hydrolase	K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D      AArcS_1124 adk; Adenylate kinase or related kinase	K00939 adk; adenylate kinase [EC:2.7.4.3]
D      AArcS_0439 apt; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_0742 apt2; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_1888 apt3; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_2376 apt4; Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D      AArcS_3059 argH; Argininosuccinate lyase	K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D      AArcS_3058 argG; Argininosuccinate synthase	K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D      AArcS_0553 fbp; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_0624 fbp2; Fructose-1,6-bisphosphatase	K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D      AArcS_1827 glpK; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_1828 glpK2; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_1833 glpK3; Glycerol kinase	K00864 glpK; glycerol kinase [EC:2.7.1.30]
D      AArcS_2911 glnA; Glutamine synthetase	K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D      AArcS_3117 hemB; Delta-aminolevulinic acid dehydratase	K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D      AArcS_2704 phhB; Pterin-4a-carbinolamine dehydratase	K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D      AArcS_0590 serA; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_2190 serA3; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3076 serA4; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_3110 serA5; Phosphoglycerate dehydrogenase or related dehydrogenase	K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D      AArcS_0307 lpd; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_1467 lpd2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme	K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D      AArcS_2764 fixB2; Electron transfer flavoprotein, alpha subunit	K03522 fixB; electron transfer flavoprotein alpha subunit
D      AArcS_2824 fixB3; Electron transfer flavoprotein, alpha subunit	K03522 fixB; electron transfer flavoprotein alpha subunit
D      AArcS_1535 gdhA; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_2018 gdhA2; Glutamate dehydrogenase/leucine dehydrogenase	K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D      AArcS_1392 tpiA; Triosephosphate isomerase	K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C    02048 Prokaryotic defense system [BR:hara02048]
D      AArcS_2880 cas1; CRISPR-associated protein Cas1	K15342 cas1; CRISP-associated protein Cas1
D      AArcS_2881 cas2; CRISPR-associated protein Cas2	K09951 cas2; CRISPR-associated protein Cas2
D      AArcS_2878 cas3d; CRISPR-Cas system related heleicase, Cas3 (C-terminal HD nuclease domain)	K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D      AArcS_2873 csa3-2; CRISPR-Cas associated transcriptional regulator,contains CARF and HTH domain	K07725 csa3; CRISPR-associated protein Csa3
D      AArcS_2879 cas4; CRISPR-associated protein Cas4, RecB family exonuclease	K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D      AArcS_2874 cas6; CRISPR-Cas system related protein, RAMP superfamily Cas6 group	K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D      AArcS_2876 csc2g7; CRISPR-Cas system related protein, RAMP superfamily Cas7 group	K19121 csc2; CRISPR-associated protein Csc2
D      AArcS_1339 DNA modification methylase	K24451 zim; modification methylase
D      AArcS_0586 mazF; Toxin-antitoxin addiction module toxin componentMazF (an endoRNAse)	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D      AArcS_2247 doc; Prophage maintenance system killer protein	K07341 doc; death on curing protein
D      AArcS_0078 vapC; PIN domain containing protein	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D      AArcS_2930 vapC6; PIN domain containing protein	K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D      AArcS_2311 ftsZ; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_2595 ftsZ4; Cell division GTPase	K03531 ftsZ; cell division protein FtsZ
D      AArcS_1327 glnS; Glutamyl-or glutaminyl-tRNA synthetase	K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D      AArcS_3031 nob1; Endonuclease Nob1, consists of a PIN domain and a Zn-ribbon module	K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
C    04030 G protein-coupled receptors [BR:hara04030]
D      AArcS_2588 Bacteriorhodopsin	K04642 hop; halorhodopsin
C    04050 Cytokine receptors
C    04054 Pattern recognition receptors
C    03310 Nuclear receptors
C    04040 Ion channels
C    04031 GTP-binding proteins
C    04052 Cytokines and neuropeptides
C    04515 Cell adhesion molecules
C    04090 CD molecules
C    01504 Antimicrobial resistance genes [BR:hara01504]
C    00535 Proteoglycans
C    00536 Glycosaminoglycan binding proteins
C    00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:hara00537]
D      AArcS_0529 Fe-S-cluster containining protein	K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
C    04091 Lectins
C    04990 Domain-containing proteins not elsewhere classified
B
B  09185 Viral protein families
C    03200 Viral proteins
C    03210 Viral fusion proteins
B
B  09184 RNA family
C    03100 Non-coding RNAs [BR:hara03100]
D      AArcS_2799 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_0202 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_1948 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_2028 tRNA-Ala	K14218 tRNA-Ala; tRNA Ala
D      AArcS_1962 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0323 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_1855 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0287 tRNA-Arg	K14219 tRNA-Arg; tRNA Arg
D      AArcS_0328 tRNA-Asn	K14220 tRNA-Asn; tRNA Asn
D      AArcS_2848 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      AArcS_2851 tRNA-Asp	K14221 tRNA-Asp; tRNA Asp
D      AArcS_0207 tRNA-Cys	K14222 tRNA-Cys; tRNA Cys
D      AArcS_1219 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      AArcS_0015 tRNA-Gln	K14223 tRNA-Gln; tRNA Gln
D      AArcS_0889 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      AArcS_1556 tRNA-Glu	K14224 tRNA-Glu; tRNA Glu
D      AArcS_0038 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_1162 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_1516 tRNA-Gly	K14225 tRNA-Gly; tRNA Gly
D      AArcS_2113 tRNA-His	K14226 tRNA-His; tRNA His
D      AArcS_2871 tRNA-Ile	K14227 tRNA-Ile; tRNA Ile
D      AArcS_0370 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_1015 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0594 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0680 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_0854 tRNA-Leu	K14228 tRNA-Leu; tRNA Leu
D      AArcS_1326 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      AArcS_0339 tRNA-Lys	K14229 tRNA-Lys; tRNA Lys
D      AArcS_0329 tRNA-Ile	K14230 tRNA-Met; tRNA Met
D      AArcS_1873 tRNA-iMet	K14230 tRNA-Met; tRNA Met
D      AArcS_2125 tRNA-Met	K14230 tRNA-Met; tRNA Met
D      AArcS_2748 tRNA-Phe	K14231 tRNA-Phe; tRNA Phe
D      AArcS_2782 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1082 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1116 tRNA-Pro	K14232 tRNA-Pro; tRNA Pro
D      AArcS_1441 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_0685 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_2918 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_2175 tRNA-Ser	K14233 tRNA-Ser; tRNA Ser
D      AArcS_0522 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      AArcS_0046 tRNA-Thr	K14234 tRNA-Thr; tRNA Thr
D      AArcS_1322 tRNA-Trp	K14235 tRNA-Trp; tRNA Trp
D      AArcS_2314 tRNA-Tyr	K14236 tRNA-Tyr; tRNA Tyr
D      AArcS_2938 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      AArcS_2745 tRNA-Val	K14237 tRNA-Val; tRNA Val
D      AArcS_0201 16S ribosomal RNA	K01977 16SrRNA; 16S ribosomal RNA
D      AArcS_0203 23S ribosomal RNA	K01980 23SrRNA; 23S ribosomal RNA
D      AArcS_0204 5S ribosomal RNA	K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B  09191 Unclassified: metabolism
C    99980 Enzymes with EC numbers
D      AArcS_1824 ara1; Aldo/keto reductase, related to diketogulonate reductase	K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D      AArcS_2189 ara12; Aldo/keto reductase, related to diketogulonate reductase	K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D      AArcS_2441 ara13; Aldo/keto reductase, related to diketogulonate reductase	K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D      AArcS_0607 tas; Aryl-alcohol dehydrogenase related enzyme	K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D      AArcS_2179 tas6; Aryl-alcohol dehydrogenase related enzyme	K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D      AArcS_1758 Uncharacterized protein	K25950 amdH; secondary-alkyl amine dehydrogenase [NAD(P)+] [EC:1.4.1.28]
D      AArcS_2386 putative dinucleotide-binding enzyme	K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D      AArcS_1470 fixC2; Dehydrogenase (flavoprotein)	K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D      AArcS_2427 fixC5; Dehydrogenase (flavoprotein)	K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D      AArcS_2823 fixC6; Dehydrogenase (flavoprotein)	K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D      AArcS_1048 putative NAD/FAD-dependent oxidoreductase	K18208 RNLS; renalase [EC:1.6.3.5]
D      AArcS_1412 qor; NADPH:quinone reductase or related Zn-dependent oxidoreductase	K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D      AArcS_0138 msrA; Peptide methionine sulfoxide reductase	K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D      AArcS_0237 msrA2; Peptide methionine sulfoxide reductase	K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D      AArcS_2264 Conserved domain frequently associated with peptide methionine sulfoxide reductase	K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D      AArcS_1932 ecm4; putative glutathione S-transferase	K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D      AArcS_1526 bcp4; Peroxiredoxin	K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D      AArcS_1279 bcp3; Peroxiredoxin	K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]
D      AArcS_1960 bcp5; Peroxiredoxin	K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]
D      AArcS_3124 bcp6; Peroxiredoxin	K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]
D      AArcS_1778 Pirin-related protein	K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D      AArcS_2587 Bacteriorhodopsin related protein	K21817 blh; beta-carotene 15,15'-dioxygenase [EC:1.13.11.63]
D      AArcS_2786 Bacteriorhodopsin related protein	K21817 blh; beta-carotene 15,15'-dioxygenase [EC:1.13.11.63]
D      AArcS_2662 pcm; Protein-L-isoaspartate carboxylmethyltransferase	K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D      AArcS_2663 pcm2; Protein-L-isoaspartate carboxylmethyltransferase	K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D      AArcS_0737 dph5; Diphthamide biosynthesis methyltransferase	K20215 dph5; diphthine synthase [EC:2.1.1.98]
D      AArcS_1354 wbbJ2; Acetyltransferase (isoleucine patch superfamily)	K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D      AArcS_1750 dys1; Deoxyhypusine synthase	K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D      AArcS_1166 Queuine tRNA-ribosyltransferase, containing PUA domain	K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-]
D      AArcS_1172 MiaB family, Radical SAM enzyme	K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]
D      AArcS_1751 disA_N; Diadenylate cyclase (c-di-AMP synthetase), DisA_N domain	K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D      AArcS_2727 disA_N2; Diadenylate cyclase (c-di-AMP synthetase), DisA_N domain	K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D      AArcS_3002 thiF; Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis	K22837 ubaA; SAMP-activating enzyme [EC:2.7.7.100]
D      AArcS_1390 pgsA2; Phosphatidylglycerophosphate synthase	K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D      AArcS_2166 fadM; Acyl-CoA thioesterase FadM	K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D      AArcS_1328 nucS2; RecB family endonuclease acting on branched DNA substrates	K07503 nucS; endonuclease [EC:3.1.-.-]
D      AArcS_0388 Nucleoside 2-deoxyribosyltransferase	K22928 DNPH1; 2'-deoxynucleoside 5'-phosphate N-hydrolase [EC:3.2.2.-]
D      AArcS_0561 speB; Arginase family enzyme	K18459 gpuA; guanidinopropionase [EC:3.5.3.17]
D      AArcS_0446 AAA+ ATPase of MoxR-like family, a component of a putative secretion system	K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D      AArcS_1711 AAA+ ATPase of MoxR-like family, a component of a putative secretion system	K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D      AArcS_2176 AAA+ ATPase of MoxR-like family, a component of a putative secretion system	K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D      AArcS_2520 AAA+ ATPase of MoxR-like family, a component of a putative secretion system	K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D      AArcS_2612 S-adenosyl-l-methionine hydroxide adenosyltransferase	K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D      AArcS_1766 nnr2; NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D      AArcS_1063 rcl1; RNA 3'-terminal phosphate cyclase	K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D      AArcS_0791 zntA2; Cation transport ATPase	K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D      AArcS_2902 mgtA; Cation transport ATPase	K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D      AArcS_1218 zntA4; Cation transport ATPase	K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D      AArcS_1547 zntA5; Cation transport ATPase	K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C    99981 Carbohydrate metabolism
D      AArcS_0233 lutC; L-lactate utilization protein LutC, contains LUDdomain	K00782 lldG; L-lactate dehydrogenase complex protein LldG
C    99982 Energy metabolism
D      AArcS_0142 fer; Ferredoxin	K05337 fer; ferredoxin
D      AArcS_1193 fer2; Ferredoxin	K05337 fer; ferredoxin
D      AArcS_0211 iscU; NifU-like protein	K04488 iscU; nitrogen fixation protein NifU and related proteins
D      AArcS_2429 fixA; Electron transfer flavoprotein, beta subunit	K03521 fixA; electron transfer flavoprotein beta subunit
D      AArcS_2765 fixA2; Electron transfer flavoprotein, beta subunit	K03521 fixA; electron transfer flavoprotein beta subunit
D      AArcS_2822 fixX; Ferredoxin-like protein	K03855 fixX; ferredoxin like protein
D      AArcS_0992 nrfD2; Formate-dependent nitrite reductase, membrane component	K04015 nrfD; protein NrfD
D      AArcS_2809 nrfD3; Formate-dependent nitrite reductase, membrane component	K04015 nrfD; protein NrfD
D      AArcS_1480 Flavin-binding protein dodecin	K09165 K09165; dodecin
C    99983 Lipid metabolism
C    99984 Nucleotide metabolism
C    99985 Amino acid metabolism
C    99986 Glycan metabolism
D      AArcS_0855 aglD2; putative flippase	K07027 K07027; glycosyltransferase 2 family protein
C    99987 Cofactor metabolism
C    99988 Secondary metabolism
C    99999 Others
D      AArcS_1225 gloA5; Lactoylglutathione lyase or related enzyme	K15975 K15975; glyoxalase family protein
D      AArcS_1381 putative membrane protein, DoxD family	K15977 K15977; putative oxidoreductase
D      AArcS_0696 putative esterase	K06999 K06999; phospholipase/carboxylesterase
B
B  09192 Unclassified: genetic information processing
C    99973 Transcription
D      AArcS_1391 putative transcription factor	K03627 MBF1; putative transcription factor
D      AArcS_1054 cspC; Cold shock protein, CspA family	K03704 cspA; cold shock protein
D      AArcS_2710 cspC2; Cold shock protein, CspA family	K03704 cspA; cold shock protein
D      AArcS_2762 cspC3; Cold shock protein, CspA family	K03704 cspA; cold shock protein
D      AArcS_1543 lsm1; Small nuclear ribonucleoprotein (snRNP)-like protein	K04796 RUXX; small nuclear ribonucleoprotein
D      AArcS_2093 Transcriptional regulator containing an HTH domain fused to a Zn-ribbon	K07743 K07743; transcriptional regulator
D      AArcS_1447 putative transcriptional regulator	K07744 K07744; transcriptional regulator
D      AArcS_2215 putative transcriptional regulator	K07744 K07744; transcriptional regulator
C    99974 Translation
D      AArcS_1504 putative RNA-binding protein	K07572 K07572; putative nucleotide binding protein
D      AArcS_1203 ySH1; putative exonuclease of the beta-lactamase foldinvolved in RNA processing	K07577 K07577; putative mRNA 3-end processing factor
D      AArcS_1664 ySH12; putative exonuclease of the beta-lactamase foldinvolved in RNA processing	K07577 K07577; putative mRNA 3-end processing factor
D      AArcS_0690 putative RNA methylase	K07579 K07579; putative methylase
D      AArcS_1025 Exosome subunit, RNA binding protein with dsRBD fold	K07581 K07581; RNA-binding protein
D      AArcS_3041 putative subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain	K07585 K07585; tRNA methyltransferase
C    99975 Protein processing
D      AArcS_0571 ureE; Urease accessory protein UreE	K03187 ureE; urease accessory protein
D      AArcS_0570 ureF; Urease accessory protein UreF	K03188 ureF; urease accessory protein
D      AArcS_0573 hypB; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K03189 ureG; urease accessory protein
D      AArcS_0572 ureH; Urease accessory protein UreH	K03190 ureD; urease accessory protein
D      AArcS_2381 hypE; Hydrogenase maturation factor	K04655 hypE; hydrogenase expression/formation protein HypE
D      AArcS_2458 tRNA modification protein	K07398 K07398; conserved protein with predicted RNA binding PUA domain
C    99976 Replication and repair
D      AArcS_1676 HNH family endonuclease	K07454 K07454; putative restriction endonuclease
D      AArcS_1683 HNH family endonuclease	K07454 K07454; putative restriction endonuclease
D      AArcS_3092 putative endonuclease containing a URI domain	K07461 K07461; putative endonuclease
D      AArcS_0087 Transposable element	K07496 K07496; putative transposase
D      AArcS_0595 Transposable element	K07496 K07496; putative transposase
D      AArcS_0779 Transposable element	K07496 K07496; putative transposase
D      AArcS_0833 Transposable element	K07496 K07496; putative transposase
D      AArcS_2547 Transposable element	K07496 K07496; putative transposase
D      AArcS_2766 Transposable element	K07496 K07496; putative transposase
D      AArcS_1581 Transposable element	K07496 K07496; putative transposase
D      AArcS_1608 Transposase	K07498 K07498; putative transposase
C    99979 Viral proteins
C    99998 Others
D      AArcS_2996 pspA; Phage shock protein A	K03969 pspA; phage shock protein A
D      AArcS_2206 phrB3; Deoxyribodipyrimidine photolyase	K25656 cry; cryptochrome
B
B  09193 Unclassified: signaling and cellular processes
C    99977 Transport
D      AArcS_0609 focA; Formate/nitrite family of transporter	K21990 yfdC; formate-nitrite transporter family protein
D      AArcS_1567 pitA2; Phosphate/sulfate permease	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      AArcS_2780 pitA3; Phosphate/sulfate permease	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      AArcS_3121 pitA4; Phosphate/sulfate permease	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      AArcS_3156 pitA5; Phosphate/sulfate permease	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      AArcS_3158 pitA6; Phosphate/sulfate permease	K03306 TC.PIT; inorganic phosphate transporter, PiT family
D      AArcS_2717 putP; Na+/proline symporter	K03307 TC.SSS; solute:Na+ symporter, SSS family
D      AArcS_0962 Na+-dependent transporter of the SNF family	K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C    99978 Cell growth
D      AArcS_0973 spoVR; putative membrane protein	K06415 spoVR; stage V sporulation protein R
C    99993 Cell motility
D      AArcS_1072 Pilin/Flagellin, FlaG/FlaF family	K23255 pilA; archaeal type IV pilus assembly protein PilA
D      AArcS_1073 Pilin/Flagellin, FlaG/FlaF family	K23255 pilA; archaeal type IV pilus assembly protein PilA
D      AArcS_1074 Pilin/Flagellin, FlaG/FlaF family	K23255 pilA; archaeal type IV pilus assembly protein PilA
D      AArcS_1891 hypothetical protein	K23255 pilA; archaeal type IV pilus assembly protein PilA
C    99995 Signaling proteins
D      AArcS_0976 prkA2; putative Ser/Thr protein kinase	K07180 prkA; serine protein kinase
D      AArcS_1747 rad553; RecA-superfamily ATPase implicated in signal transduction	K08482 kaiC; circadian clock protein KaiC
D      AArcS_3042 pdcd5; DNA-binding TFAR19-related protein, PDSD5 family	K06875 PDCD5; programmed cell death protein 5
C    99992 Structural proteins
D      AArcS_0510 S-layer protein	K26284 csg; S-layer glycoprotein
C    99994 Others
D      AArcS_2660 phoU2; Phosphate uptake regulator	K02039 phoU; phosphate transport system protein
D      AArcS_2988 phoU4; Phosphate uptake regulator	K02039 phoU; phosphate transport system protein
D      AArcS_0951 cutA; Uncharacterized protein	K03926 cutA; periplasmic divalent cation tolerance protein
D      AArcS_0787 Lipoprotein NosD family	K07218 nosD; nitrous oxidase accessory protein
D      AArcS_2701 moeA2; Molybdopterin biosynthesis enzyme	K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
B
B  09194 Poorly characterized
C    99996 General function prediction only
D      AArcS_0360 ATPase (PilT family)	K06865 K06865; ATPase
D      AArcS_1127 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster	K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D      AArcS_1681 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster	K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D      AArcS_2990 Hemoglobin-like protein	K06886 glbN; hemoglobin
D      AArcS_2318 HAD superfamily hydrolase	K07025 K07025; putative hydrolase of the HAD superfamily
D      AArcS_2689 HAD superfamily hydrolase	K07025 K07025; putative hydrolase of the HAD superfamily
D      AArcS_1239 sufB; Cysteine desulfurase activator SufB	K09014 sufB; Fe-S cluster assembly protein SufB
D      AArcS_1240 sufB2; Cysteine desulfurase activator SufB	K09015 sufD; Fe-S cluster assembly protein SufD
D      AArcS_0714 putative metal-dependent hydrolase (urease superfamily)	K07049 K07049; TatD-related deoxyribonuclease
D      AArcS_2870 fxsA; Protein affecting phage T7 exclusion by the F plasmid	K07113 fxsA; UPF0716 protein FxsA
D      AArcS_0647 Tripartite tricarboxylate transporter (TTT) class transporter	K08971 K08971; putative membrane protein
D      AArcS_1838 putative membrane protein, DUF368 family	K08974 K08974; putative membrane protein
D      AArcS_2352 ABC-type multidrug transport system, permease component	K08975 K08975; putative membrane protein
D      AArcS_3038 ABC-type multidrug transport system, permease component	K08975 K08975; putative membrane protein
D      AArcS_0911 Uncharacterized membrane protein YozB, DUF420 family	K08976 K08976; putative membrane protein
D      AArcS_1540 Uncharacterized membrane protein YozB, DUF420 family	K08976 K08976; putative membrane protein
D      AArcS_0583 putative membrane protein, contains bPH2 (bacterial pleckstrin homology) domain	K08981 K08981; putative membrane protein
C    99997 Function unknown
D      AArcS_2241 Archaeal enzyme of ATP-grasp superfamily	K06869 K06869; uncharacterized protein
D      AArcS_1013 pta; BioD-like N-terminal domain of phosphotransacetylase	K06873 K06873; uncharacterized protein
D      AArcS_1374 HD superfamily phosphohydrolase	K06885 K06885; uncharacterized protein
D      AArcS_1764 HD superfamily phosphohydrolase	K06885 K06885; uncharacterized protein
D      AArcS_0533 Prenyltransferase family protein containing thioredoxin domain	K06888 K06888; uncharacterized protein
D      AArcS_2869 Prenyltransferase family protein containing thioredoxin domain	K06888 K06888; uncharacterized protein
D      AArcS_1852 putative CoA-binding protein	K06929 K06929; uncharacterized protein
D      AArcS_0109 putative DNA-binding protein with PD1-like DNA-binding motif	K06934 K06934; uncharacterized protein
D      AArcS_0402 Fe-S-cluster containining protein	K06940 K06940; uncharacterized protein
D      AArcS_2599 Fe-S-cluster containining protein	K06940 K06940; uncharacterized protein
D      AArcS_1342 putative HD superfamily hydrolase	K06950 K06950; uncharacterized protein
D      AArcS_0710 putative phosphohydrolase, MPP superfamily	K06953 K06953; uncharacterized protein
D      AArcS_1345 putative phosphohydrolase, MPP superfamily	K06953 K06953; uncharacterized protein
D      AArcS_1944 putative deacylase	K06987 K06987; uncharacterized protein
D      AArcS_2534 putative deacylase	K06987 K06987; uncharacterized protein
D      AArcS_1211 nimA; Nitroimidazol reductase NimA or a related FMN-containing flavoprotein, pyridoxamine 5'-phosphate oxidase superfamily	K07005 K07005; uncharacterized protein
D      AArcS_2997 Alpha/beta superfamily hydrolase	K07018 K07018; uncharacterized protein
D      AArcS_2472 putative metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain	K07041 K07041; uncharacterized protein
D      AArcS_2604 putative metal-dependent hydrolase of the TIM-barrel fold	K07045 K07045; uncharacterized protein
D      AArcS_0366 PIN domain containing protein	K07064 K07064; uncharacterized protein
D      AArcS_1579 PIN domain containing protein	K07064 K07064; uncharacterized protein
D      AArcS_2155 PIN domain containing protein	K07065 K07065; uncharacterized protein
D      AArcS_2608 PIN domain containing protein	K07065 K07065; uncharacterized protein
D      AArcS_0915 OB-fold domain and Zn-ribbon containing protein,possible acyl-CoA-binding protein	K07068 K07068; uncharacterized protein
D      AArcS_1555 OB-fold domain and Zn-ribbon containing protein,possible acyl-CoA-binding protein	K07068 K07068; uncharacterized protein
D      AArcS_1789 Sulfite exporter, TauE/SafE family	K07090 K07090; uncharacterized protein
D      AArcS_2232 Sulfite exporter, TauE/SafE family	K07090 K07090; uncharacterized protein
D      AArcS_0354 ICC-like phosphoesterase	K07095 K07095; uncharacterized protein
D      AArcS_2128 ICC-like phosphoesterase	K07095 K07095; uncharacterized protein
D      AArcS_0317 Oligoribonuclease NrnB or cAMP/cGMP phosphodiesterase, DHH superfamily	K07097 K07097; uncharacterized protein
D      AArcS_2048 hpt1; Hypoxanthine phosphoribosyltransferase	K07101 K07101; uncharacterized protein
D      AArcS_3152 putative regulator of amino acid metabolism, contains ACT domain	K07103 K07103; uncharacterized protein
D      AArcS_0887 putative transporter component	K07112 K07112; uncharacterized protein
D      AArcS_0888 putative transporter component	K07112 K07112; uncharacterized protein
D      AArcS_2226 putative transporter component	K07112 K07112; uncharacterized protein
D      AArcS_2227 putative transporter component	K07112 K07112; uncharacterized protein
D      AArcS_3040 Uncharacterized protein	K07129 K07129; uncharacterized protein
D      AArcS_2150 putative Fe-S protein	K07140 K07140; MOSC domain-containing protein
D      AArcS_3013 Uncharacterized membrane protein, DUF418 family	K07148 K07148; uncharacterized protein
D      AArcS_2499 fcf1; rRNA-processing protein FCF1, contains PIN domain	K07158 K07158; uncharacterized protein
D      AArcS_1864 Archaeal enzyme of ATP-grasp superfamily	K07159 K07159; uncharacterized protein
D      AArcS_3174 Zn-ribbon containing protein	K07163 K07163; uncharacterized protein
D      AArcS_2391 Bifunctional nuclease	K08999 K08999; uncharacterized protein
D      AArcS_2168 Uncharacterized protein	K09005 K09005; uncharacterized protein
D      AArcS_2744 putative membrane protein	K09005 K09005; uncharacterized protein
D      AArcS_0760 Endonuclease V-like protein	K09120 K09120; uncharacterized protein
D      AArcS_2576 PIN-domain and Zn ribbon	K09122 K09122; uncharacterized protein
D      AArcS_3036 Uncharacterized protein	K09141 K09141; uncharacterized protein
D      AArcS_0217 Uncharacterized protein	K09148 K09148; uncharacterized protein
D      AArcS_0160 putative nuclease of RNase H fold, RuvC/YqgF family	K09150 K09150; uncharacterized protein
D      AArcS_2360 putative cell division protein	K09152 K09152; uncharacterized protein
D      AArcS_1463 DIM6/NTAB family protein	K09154 K09154; uncharacterized protein
D      AArcS_1959 HD supefamily hydrolase	K09163 K09163; uncharacterized protein
D      AArcS_0090 DUF1684 family	K09164 K09164; uncharacterized protein
D      AArcS_1120 DUF2071 family	K09166 K09166; uncharacterized protein
D      AArcS_0582 putative membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	K09167 K09167; uncharacterized protein
D      AArcS_2384 putative small methyltransferase	K09713 K09713; uncharacterized protein
D      AArcS_1816 Lipid-A-disaccharide synthase related glycosyltransferase	K09726 K09726; uncharacterized protein
D      AArcS_1496 Uncharacterized protein	K09728 K09728; uncharacterized protein
D      AArcS_1224 putative metal binding protein	K09730 K09730; uncharacterized protein
D      AArcS_1371 DUF555 family	K09731 K09731; uncharacterized protein
D      AArcS_0384 putative RNA binding protein with dsRBD fold	K09736 K09736; uncharacterized protein
D      AArcS_2347 Uncharacterized protein	K09738 K09738; uncharacterized protein
D      AArcS_3175 Uncharacterized protein	K09743 K09743; uncharacterized protein
D      AArcS_2221 bax1; Nuclease of restriction endonuclease-like fold, implicated in nucleotide excision repair	K09744 K09744; uncharacterized protein
D      AArcS_0711 RPA family protein, a subunit of RPA complex in P.furiosus	K09746 K09746; uncharacterized protein
D      AArcS_2529 RPA family protein, a subunit of RPA complex in P.furiosus	K09746 K09746; uncharacterized protein
D      AArcS_1487 putative metal-dependent hydrolase	K09763 K09763; uncharacterized protein
D      AArcS_0974 Uncharacterized protein	K09786 K09786; uncharacterized protein
D      AArcS_0657 Trm112 family	K09791 K09791; uncharacterized protein
D      AArcS_0614 tauE; Sulfite exporter TauE/SafE	K09792 K09792; uncharacterized protein
D      AArcS_0792 tauE2; Sulfite exporter TauE/SafE	K09792 K09792; uncharacterized protein
D      AArcS_1061 Uncharacterized membrane protein, DUF456 family	K09793 K09793; uncharacterized protein
D      AArcS_1718 putative secereted protein, contains kinase-interacting SIMPL domain	K09807 K09807; uncharacterized protein
D      AArcS_2301 putative secereted protein, contains kinase-interacting SIMPL domain	K09807 K09807; uncharacterized protein
D      AArcS_0276 Uncharacterized protein	K09822 K09822; uncharacterized protein
D      AArcS_2653 DUF2062 family	K09928 K09928; uncharacterized protein
D      AArcS_3085 DUF2237 family	K09966 K09966; uncharacterized protein
D      AArcS_0885 putative exonuclease, contains RNaseH-like domain	K07502 yprB; uncharacterized protein
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#Last updated: June 23, 2024