+F Repair protein KO #

  DNA Repair and Recombination Proteins - Natranaeroarchaeum sulfidigenes

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AArcS_2617 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AArcS_0106 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AArcS_1395 phrB2; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AArcS_1426 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AArcS_0850 alkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E AArcS_1920 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AArcS_2343 nth2; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen E AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen E AArcS_1423 fen1; 5'-3' exonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E AArcS_1457 cDC9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E AArcS_0853 xpb; ssDNA-dependent ATPase, helicase superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E AArcS_0089 dinG; Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E AArcS_0148 dinG2; Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D Other NER factors E AArcS_1457 cDC9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen E AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen E AArcS_1457 cDC9; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E AArcS_0324 rpa1; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit or related ssDNA-binding protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D AArcS_1738 dnaN; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen D AArcS_3077 dnaN2; DNA polymerase sliding clamp subunit (PCNA-like protein) K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AArcS_0636 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AArcS_2126 dcd2; Deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AArcS_2617 ada; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AArcS_0106 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AArcS_1395 phrB2; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AArcS_1825 Uncharacterized protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E AArcS_1510 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AArcS_2482 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AArcS_3127 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AArcS_1942 alkA2; 3-methyladenine DNA glycosylase/8-oxoguanine DNAglycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AArcS_1426 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AArcS_1920 nth; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AArcS_2343 nth2; EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AArcS_2257 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E AArcS_2580 nfi; Deoxyinosine 3'endonuclease (endonuclease V) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AArcS_0116 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E AArcS_2909 uvrA; Excinuclease ABC subunit A, ATPase K03701 uvrA; excinuclease ABC subunit A E AArcS_0076 uvrB; Excinuclease ABC subunit B, helicase K03702 uvrB; excinuclease ABC subunit B E AArcS_3133 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AArcS_1787 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AArcS_3005 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AArcS_0116 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AArcS_1755 mutS; Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E AArcS_2157 mutS2; Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS E AArcS_2144 mutS2-1; DNA structure-specific ATPase involved in suppression of recombination, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 E AArcS_3086 mutS2-2; DNA structure-specific ATPase involved in suppression of recombination, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AArcS_2153 mutL2; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AArcS_1624 xseA; Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AArcS_1625 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme D DNA ligase E AArcS_0116 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AArcS_1787 recB; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AArcS_3005 uvrD; Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AArcS_2023 sbcC; ATPase involved in DNA repair, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E AArcS_1659 sbcD; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AArcS_2024 sbcD2; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E AArcS_2880 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E AArcS_0290 recA; RecA/RadA recombinase K04483 radA; DNA repair protein RadA E AArcS_2732 recA2; RecA/RadA recombinase K04484 radB; DNA repair protein RadB E AArcS_3069 Holliday junction resolvase, archaeal type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E AArcS_2023 sbcC; ATPase involved in DNA repair, SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E AArcS_1659 sbcD; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AArcS_2024 sbcD2; DNA repair exonuclease, SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AArcS_0032 bRR2; Replicative superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E AArcS_0143 bRR21; Replicative superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AArcS_1450 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AArcS_1451 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AArcS_0190 nucS; RecB family endonuclease acting on branched DNA substrates K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AArcS_2055 Topoisomerase DNA binding C4 zinc finger fused to uncharacterized N-terminal domain often associated with RecB-like endonuclease K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AArcS_3135 recJ; Single-stranded DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AArcS_0116 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AArcS_2909 uvrA; Excinuclease ABC subunit A, ATPase K03701 uvrA; excinuclease ABC subunit A F AArcS_0076 uvrB; Excinuclease ABC subunit B, helicase K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AArcS_0985 dpo4; Family Y DNA polymerase K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D AArcS_2577 pol4; DNA polymerase IV (family X) K02347 polX; DNA polymerase (family X) C DNA helicases D AArcS_0708 lhr; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D AArcS_0872 lhr2; Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D AArcS_1604 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AArcS_0636 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AArcS_2126 dcd2; Deoxycytidine deaminase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AArcS_2932 nrdA; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D AArcS_2570 Protein, predicted to be involved in DNA repair K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024