+F Repair protein KO #

  DNA Repair and Recombination Proteins - Halobacteriovorax sp. BALOs_7

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BALOs_0597 DNA-binding domain, methylated-DNA-[protein] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BALOs_2173 putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BALOs_2820 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BALOs_2814 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BALOs_2315 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BALOs_2830 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALOs_1491 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BALOs_0597 DNA-binding domain, methylated-DNA-[protein] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BALOs_2173 putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BALOs_2820 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BALOs_2814 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BALOs_1050 tag; methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BALOs_2220 mutM; putative DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BALOs_2315 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BALOs_2018 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BALOs_2986 nfo; xylose isomerase-like TIM barrel domain protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BALOs_2535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BALOs_3026 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BALOs_0295 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BALOs_0164 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E BALOs_0045 uvrA; ABC transporter, ATP-binding domain protein K03701 uvrA; excinuclease ABC subunit A E BALOs_1974 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BALOs_0416 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E BALOs_1942 uvrD; putative ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_0210 uvrD; putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_2218 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_0295 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E BALOs_3026 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BALOs_2915 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BALOs_2914 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BALOs_2882 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BALOs_0168 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BALOs_0049 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BALOs_2420 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BALOs_0131 mutS2; MutS domain V protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BALOs_2502 mutL; GHKL domain protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BALOs_2460 xseA; putative exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BALOs_2947 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BALOs_1197 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BALOs_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BALOs_2458 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BALOs_1849 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BALOs_2517 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BALOs_0081 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BALOs_3026 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BALOs_1942 uvrD; putative ATP-dependent helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_0210 uvrD; putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_2218 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BALOs_0520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BALOs_0718 ssb; single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BALOs_0173 recA; RecA protein K03553 recA; recombination protein RecA E BALOs_2937 ruvA; putative Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BALOs_2936 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BALOs_2938 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BALOs_2320 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BALOs_0173 recA; RecA protein K03553 recA; recombination protein RecA E BALOs_3025 sms; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BALOs_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BALOs_0178 recG; putative ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BALOs_2535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BALOs_0083 recR; recombination protein RecR K06187 recR; recombination protein RecR E BALOs_2937 ruvA; putative Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BALOs_2936 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BALOs_2938 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BALOs_0279 UvrD/REP helicase N-terminal domain protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor E BALOs_2050 type III restriction enzyme, res subunit K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BALOs_0005 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BALOs_2047 gyrA; DNA gyrase/topoisomerase IV, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BALOs_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BALOs_2049 gyrB; DNA gyrase, B subunit, C-terminal domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BALOs_2296 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BALOs_0423 hupB; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BALOs_2535 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BALOs_0083 recR; recombination protein RecR K06187 recR; recombination protein RecR F BALOs_3026 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BALOs_2046 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BALOs_1399 ihfB; putative integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BALOs_1033 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BALOs_2598 type III restriction enzyme, res subunit K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BALOs_0164 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F BALOs_0045 uvrA; ABC transporter, ATP-binding domain protein K03701 uvrA; excinuclease ABC subunit A F BALOs_1974 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BALOs_2706 ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V D BALOs_2707 peptidase S24-like protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D BALOs_0173 recA; RecA protein K03553 recA; recombination protein RecA D BALOs_1645 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BALOs_2431 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D BALOs_0520 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BALOs_0718 ssb; single-strand binding family protein K03111 ssb; single-strand DNA-binding protein D BALOs_0172 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BALOs_2069 dinG; exonuclease K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BALOs_2830 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BALOs_1491 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BALOs_1524 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BALOs_1525 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BALOs_0664 DHHA1 domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024