+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Halotia branconii
%
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ACRISPR-Cas system
B Universal Cas proteins
C QI031_14630 cas1d; type I-D CRISPR-associated endonuclease Cas1d K15342 cas1; CRISP-associated protein Cas1
C QI031_02105 cas1d; type I-D CRISPR-associated endonuclease Cas1d K15342 cas1; CRISP-associated protein Cas1
C QI031_14625 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
C QI031_24490 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
C QI031_02100 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D QI031_14680 cas3; type I-D CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D QI031_02130 cas3; type I-D CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D QI031_14635 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_02110 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_14640 cas6; CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D QI031_02115 cas6; CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-B factors
D QI031_14635 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_02110 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D QI031_14635 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_02110 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D QI031_14645 cas5d; type I-D CRISPR-associated protein Cas5/Csc1 K19120 csc1; CRISPR-associated protein Csc1
D QI031_02120 cas5d; type I-D CRISPR-associated protein Cas5/Csc1 K19120 csc1; CRISPR-associated protein Csc1
D QI031_14650 cas7d; type I-D CRISPR-associated protein Cas7/Csc2 K19121 csc2; CRISPR-associated protein Csc2
D QI031_02125 cas7d; type I-D CRISPR-associated protein Cas7/Csc2 K19121 csc2; CRISPR-associated protein Csc2
D QI031_14655 cas10d; type I-D CRISPR-associated protein Cas10d/Csc3 K19122 csc3; CRISPR-associated protein Csc3
D QI031_14635 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_02110 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_14640 cas6; CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D QI031_02115 cas6; CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D QI031_14635 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D QI031_02110 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
D QI031_21130 type III-B CRISPR-associated protein Cas10/Cmr2 K19076 cmr2; CRISPR-associated protein Cmr2
D QI031_21125 type III-B CRISPR module-associated Cmr3 family protein K09127 cmr3; CRISPR-associated protein Cmr3
D QI031_21120 cmr4; type III-B CRISPR module RAMP protein Cmr4 K09000 cmr4; CRISPR-associated protein Cmr4
D QI031_21105 hypothetical protein K19142 cmr6; CRISPR-associated protein Cmr6
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C QI031_13340 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C QI031_13305 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C QI031_16805 class I SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D QI031_06240 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D QI031_16390 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D QI031_17485 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D QI031_07945 site-specific DNA-methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D QI031_22505 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D QI031_24815 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D QI031_30415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D QI031_02170 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
C QI031_31515 restriction endonuclease K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D QI031_10235 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_18365 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_22540 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_25915 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_28060 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_28410 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_29415 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_00505 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D QI031_22535 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE
D QI031_28065 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE
D QI031_10230 ribbon-helix-helix domain-containing protein K26986 mazE6; antitoxin MazE6
D QI031_25910 CopG family transcriptional regulator K26989 mazE9; antitoxin MazE9
C ChpB-ChpS
C YhaV-PrlF
D QI031_01435 type II toxin-antitoxin system YhaV family toxin K19155 yhaV; toxin YhaV [EC:3.1.-.-]
C RelE/StbE-RelB/StbD
D QI031_07205 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D QI031_16830 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D QI031_22720 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D QI031_00865 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
C YafQ-dinJ
C YoeB-YefM
D QI031_13525 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D QI031_17295 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D QI031_17290 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
D QI031_12075 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D QI031_12665 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D QI031_19320 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D QI031_21680 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D QI031_03735 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D QI031_12670 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D QI031_19325 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D QI031_24960 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
D QI031_21700 type II toxin-antitoxin system death-on-curing family toxin K07341 doc; death on curing protein
C HigB-HigA
D QI031_20625 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D QI031_24760 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D QI031_25925 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D QI031_25920 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
D QI031_08245 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_10665 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_11445 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_13810 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_16090 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_17160 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_04830 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D QI031_07230 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB
D QI031_08250 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D QI031_01870 hypothetical protein K21495 fitA; antitoxin FitA
D QI031_01905 hypothetical protein K21495 fitA; antitoxin FitA
C BC_0920-BC_0921
C Type II TA system related factors
D QI031_00635 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D QI031_10310 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D QI031_11925 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C QI031_08010 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C QI031_28985 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C QI031_04240 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C QI031_22925 DNA sulfur modification protein DndB K19169 dndB; DNA sulfur modification protein DndB
C QI031_00480 dndC; DNA phosphorothioation system sulfurtransferase DndC K19170 dndC; DNA sulfur modification protein DndC
C QI031_00270 AAA family ATPase K19171 dndD; DNA sulfur modification protein DndD
C QI031_00495 dndD; DNA sulfur modification protein DndD K19171 dndD; DNA sulfur modification protein DndD
C QI031_00510 dndE; DNA sulfur modification protein DndE K19172 dndE; DNA sulfur modification protein DndE
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023