+D Transcription factors KO #

  Transcription Factors - Hahella chejuensis

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D HCH_02855 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D HCH_05719 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D HCH_06653 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C NAC C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D HCH_00207 AraC-type DNA-binding domain-containing protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D HCH_06075 AraC-type DNA-binding domain-containing protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D HCH_06078 AraC-type DNA-binding domain-containing protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D HCH_01281 AraC-type DNA-binding domain-containing protein K07506 K07506; AraC family transcriptional regulator D HCH_05579 Adenosine deaminase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D HCH_04648 Adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D HCH_04055 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D HCH_01945 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D HCH_03697 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HCH_04321 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HCH_05530 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HCH_06129 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HCH_06808 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HCH_01175 Transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D HCH_01700 Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D HCH_03077 Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D HCH_06310 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D HCH_01593 Transcriptional regulator K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D HCH_02657 Transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D HCH_02298 Transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D HCH_01829 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT C DeoR family D HCH_06963 Transcriptional regulator of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D HCH_01170 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_02466 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_06458 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_06826 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_06905 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_06913 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HCH_03544 Transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D HCH_04168 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D HCH_06978 Transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D HCH_01271 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D HCH_01884 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D HCH_03332 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D HCH_00849 Transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D HCH_06098 Transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D HCH_01108 Transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D HCH_03535 Transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D HCH_03198 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D HCH_05621 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D HCH_06413 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D HCH_05435 Transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D HCH_02247 Transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D HCH_04936 Transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D HCH_05140 Transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D HCH_05743 Transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D HCH_00973 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HCH_02485 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HCH_02797 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HCH_04847 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HCH_05144 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HCH_05802 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D HCH_00481 malT; maltose regulon positive regulatory protein MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D HCH_01444 ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D HCH_04308 ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D HCH_03215 Transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D HCH_05143 Transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D HCH_00501 Transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D HCH_02305 Transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D HCH_03406 predicted transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D HCH_06734 predicted transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D HCH_01441 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D HCH_01221 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D HCH_00537 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D HCH_01703 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D HCH_02947 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D HCH_03036 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HCH_04640 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HCH_06133 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HCH_06253 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HCH_01717 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D HCH_04462 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D HCH_00508 predicted transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D HCH_04651 predicted transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D HCH_04177 predicted transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D HCH_05431 predicted transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D HCH_00346 Transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D HCH_00740 Transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D HCH_06234 Biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D HCH_06010 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D HCH_06994 predicted ATPase/kinase involved in NAD metabolism K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D HCH_05199 fleQ; transcription regulator FleQ (sigma 54-dependent transcriptional activator) K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D HCH_06966 acoR; Transcriptional activator of acetoin/glycerol metabolism K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D HCH_00715 sigma 54-dependent transcriptional activator containing GAF domain K12266 norR; anaerobic nitric oxide reductase transcription regulator D HCH_01373 sigma 54-dependent transcriptional activator containing GAF domain K12266 norR; anaerobic nitric oxide reductase transcription regulator D HCH_02455 modE; N-terminal domain of molybdenum-binding protein K02019 modE; molybdate transport system regulatory protein D HCH_01329 predicted transcriptional regulator K07726 K07726; putative transcriptional regulator D HCH_05031 predicted transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D HCH_01824 putA; Delta 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D HCH_03389 Regulator of nitric oxide reductase transcription K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D HCH_05005 stress-induced morphogen K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D HCH_07080 predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D HCH_03174 probable transcriptional regulator K03765 cadC; transcriptional activator of cad operon D HCH_04907 Glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor D HCH_05441 pspF; psp operon transcription activator PspF (sigma 54-dependent) K03974 pspF; psp operon transcriptional activator D HCH_00552 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D HCH_00622 predicted transcriptional regulator K07733 alpA; prophage regulatory protein D HCH_06935 Transcriptional regulator K07734 paiB; transcriptional regulator D HCH_00550 putative transcriptional regulator K07735 algH; putative transcriptional regulator D HCH_01707 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D HCH_06256 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D HCH_05958 predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains K07738 nrdR; transcriptional repressor NrdR D HCH_00168 sigma54-dependent transcription regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D HCH_01696 sigma54-dependent transcription regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D HCH_05501 sigma54-dependent transcription regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D HCH_00596 uncharacterized protein conserved in bacteria, prophage-related K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D HCH_04315 probable transcriptional regulator, Cro-like K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D HCH_05892 uncharacterized protein conserved in bacteria K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: October 1, 2025 #
Classification taken and modified from TRANSFAC 7.0