+F Repair protein KO #

  DNA Repair and Recombination Proteins - Haloferax gibbonsii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ABY42_03745 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABY42_03770 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABY42_14510 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ABY42_14400 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABY42_08210 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E ABY42_04065 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABY42_04215 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E ABY42_00845 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E ABY42_14275 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E ABY42_07615 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E ABY42_08425 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E ABY42_00185 helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E ABY42_06625 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E ABY42_02430 replication factor A K07466 RFA1; replication factor A1 D Other NER factors E ABY42_07615 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E ABY42_02430 replication factor A K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E ABY42_00845 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E ABY42_07615 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E ABY42_02430 replication factor A K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D ABY42_00845 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ABY42_00145 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_14240 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_06100 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_02385 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_09535 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ABY42_03745 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABY42_03770 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABY42_14510 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D ABY42_06030 photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E ABY42_01125 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ABY42_02035 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ABY42_13990 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ABY42_14095 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E ABY42_14400 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABY42_04065 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABY42_04215 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ABY42_02665 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E ABY42_03455 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E ABY42_00355 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ABY42_14975 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E ABY42_01785 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ABY42_00140 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ABY42_15000 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ABY42_01900 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ABY42_14975 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ABY42_02530 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E ABY42_09460 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E ABY42_00905 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 E ABY42_06640 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E ABY42_02525 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL E ABY42_09455 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E ABY42_14975 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ABY42_01900 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ABY42_04095 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ABY42_04090 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ABY42_00355 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins E ABY42_18555 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E ABY42_00495 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E ABY42_11890 DNA repair protein RadB K04484 radB; DNA repair protein RadB E ABY42_00810 nucleoid-structuring protein H-NS K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E ABY42_04095 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ABY42_04090 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11 E ABY42_00065 ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E ABY42_04660 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ABY42_07655 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ABY42_07650 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ABY42_03245 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F ABY42_14720 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ABY42_00355 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ABY42_14975 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F ABY42_01785 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ABY42_00140 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ABY42_06365 DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D ABY42_03525 DNA polymerase K02347 polX; DNA polymerase (family X) C DNA helicases D ABY42_13845 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D ABY42_06535 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D ABY42_00145 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_14240 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_06100 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_02385 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABY42_09535 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ABY42_12260 ribonucleoside reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D ABY42_03490 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024