+E Ribosome biogenesis KO
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Ribosome Biogenesis - Halobacillus halophilus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D HBHAL_3004 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C HBHAL_3558 GTP-binding protein Era K03595 era; GTPase
C HBHAL_3654 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C HBHAL_3868 conserved hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C HBHAL_3075 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C HBHAL_3478 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C HBHAL_1116 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D HBHAL_3838 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D HBHAL_1058 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D HBHAL_2913 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D HBHAL_1121 putative 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D HBHAL_2852 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D HBHAL_3570 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D HBHAL_5166 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D HBHAL_2868 S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D HBHAL_1052 rsmI; 16S rRNA cytidine-2'-O-methyltransferase RsmI K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D HBHAL_3470 yqxC; conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D HBHAL_1111 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D HBHAL_5096 yydA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D HBHAL_2930 rlmN; 23S rRNA (adenine-C2)-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D HBHAL_3470 yqxC; conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D HBHAL_1620 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D HBHAL_3333 rluB; 23S rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D HBHAL_4902 rluD4; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D HBHAL_2893 rluD3; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D HBHAL_1893 rluD1; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D HBHAL_2327 rluD2; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C HBHAL_4743 acetyltransferase, GNAT family K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C HBHAL_1411 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C HBHAL_4331 ydaF; conserved hypothetical protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C HBHAL_1808 acetyltransferase, GNAT family K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C HBHAL_3013 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C HBHAL_2671 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C HBHAL_3571 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C HBHAL_3004 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C HBHAL_3659 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
C HBHAL_3612 yrrK; probable Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C HBHAL_1110 mrnC; ribonuclease MrnC K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C HBHAL_2019 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C HBHAL_1389 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C HBHAL_3542 cshB; DEAD-box ATP-dependent RNA helicase CshB K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C HBHAL_3558 GTP-binding protein Era K03595 era; GTPase
C HBHAL_2916 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C HBHAL_2740 yloQ; ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C HBHAL_3293 GTP-binding protein EngA K03977 engA; GTPase
C HBHAL_3654 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C HBHAL_3017 ylqF; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C HBHAL_3125 hflX; GTPase HflX K03665 hflX; GTPase
C HBHAL_3594 GTPase familiy protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C HBHAL_4614 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C HBHAL_3631 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C HBHAL_3080 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C HBHAL_3074 ylxS; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C HBHAL_1004 yaaA; hypothetical protein K14761 rlbA; ribosome-associated protein
C HBHAL_3589 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C HBHAL_3560 probable rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C HBHAL_3592 yqeI; probable RNA-binding protein YqeI K07574 yhbY; RNA-binding protein
C HBHAL_4074 yvyD; putative ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C HBHAL_5145 ychF; translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C HBHAL_2859 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024