+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Halioglobus japonicus

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D BST95_09740 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D BST95_00630 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C BST95_09745 GTPase Era K03595 era; GTPase C BST95_05795 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C BST95_00905 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C BST95_05845 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C BST95_06245 dimethylmenaquinone methyltransferase K06204 dksA; RNA polymerase-binding transcription factor C BST95_18530 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C BST95_00060 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB B rRNA modification factors C 16S rRNA modification factors D BST95_12805 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D BST95_01265 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BST95_03330 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BST95_03055 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BST95_17550 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BST95_17565 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BST95_17815 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D BST95_09315 hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D BST95_00190 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BST95_11335 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BST95_18605 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BST95_19320 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D BST95_12425 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D BST95_06900 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BST95_04985 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D BST95_04040 rRNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D BST95_11015 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D BST95_14920 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BST95_15620 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BST95_11720 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BST95_18325 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BST95_12230 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] B ribosomal protein modification factors C BST95_18180 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BST95_14980 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C BST95_17150 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C BST95_01080 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C BST95_11950 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] B rRNA processing factors C BST95_09740 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C BST95_11715 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C BST95_17745 ribonuclease E/G K08301 rng; ribonuclease G [EC:3.1.26.-] C BST95_03415 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C BST95_01380 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C BST95_04235 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C BST95_17990 hypothetical protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C BST95_09745 GTPase Era K03595 era; GTPase C BST95_00635 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C BST95_16895 ribosome biogenesis GTPase Der K03977 engA; GTPase C BST95_05795 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] B Other maturation factors C BST95_03240 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BST95_18520 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C BST95_18535 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C BST95_06895 ribosome silencing factor K09710 ybeB; ribosome-associated protein C BST95_06145 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C BST95_18610 RNA-binding protein K07574 yhbY; RNA-binding protein C BST95_17730 hypothetical protein K09889 yjgA; ribosome-associated protein C BST95_10240 ribosome modulation factor K03812 rmf; ribosome modulation factor C BST95_17705 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C BST95_18490 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C BST95_13010 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024