+E Ribosome biogenesis KO
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Ribosome Biogenesis - Halioglobus japonicus
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BST95_09740 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BST95_00630 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BST95_09745 GTPase Era K03595 era; GTPase
C BST95_05795 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BST95_00905 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C BST95_05845 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C BST95_06245 dimethylmenaquinone methyltransferase K06204 dksA; RNA polymerase-binding transcription factor
C BST95_18530 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BST95_00060 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
B rRNA modification factors
C 16S rRNA modification factors
D BST95_12805 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BST95_01265 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BST95_03330 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BST95_03055 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BST95_17550 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BST95_17565 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BST95_17815 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D BST95_09315 hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D BST95_00190 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BST95_11335 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BST95_18605 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BST95_19320 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D BST95_12425 hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D BST95_06900 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BST95_04985 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BST95_04040 rRNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BST95_11015 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D BST95_14920 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BST95_15620 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BST95_11720 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BST95_18325 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BST95_12230 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C BST95_18180 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BST95_14980 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C BST95_17150 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C BST95_01080 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C BST95_11950 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C BST95_09740 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BST95_11715 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C BST95_17745 ribonuclease E/G K08301 rng; ribonuclease G [EC:3.1.26.-]
C BST95_03415 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BST95_01380 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C BST95_04235 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C BST95_17990 hypothetical protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C BST95_09745 GTPase Era K03595 era; GTPase
C BST95_00635 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BST95_16895 ribosome biogenesis GTPase Der K03977 engA; GTPase
C BST95_05795 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C BST95_03240 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BST95_18520 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BST95_18535 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C BST95_06895 ribosome silencing factor K09710 ybeB; ribosome-associated protein
C BST95_06145 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C BST95_18610 RNA-binding protein K07574 yhbY; RNA-binding protein
C BST95_17730 hypothetical protein K09889 yjgA; ribosome-associated protein
C BST95_10240 ribosome modulation factor K03812 rmf; ribosome modulation factor
C BST95_17705 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C BST95_18490 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C BST95_13010 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024