+E Ribosome biogenesis KO
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Ribosome Biogenesis - Halalkalicoccus jeotgali
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D HacjB3_07790 nucleolar protein-like protein K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D HacjB3_12080 H/ACA RNA-protein complex component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
D HacjB3_03715 KH domain protein K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D HacjB3_03730 RIO-like kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D HacjB3_13585 serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D HacjB3_07425 putative nucleotide kinase (TBD) K18532 AK6; adenylate kinase [EC:2.7.4.3]
D HacjB3_04175 hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
C Other pre-40S particles
D HacjB3_13430 putative ATPase RIL K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D HacjB3_13345 GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E HacjB3_05070 ribonuclease P protein component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E HacjB3_09350 Ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E HacjB3_08025 Ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
C Export and cytoplasmic maturation factors
D HacjB3_01415 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6
D HacjB3_01330 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3
D HacjB3_09340 Ribosome maturation protein SBDS-like protein K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D HacjB3_07375 AAA family ATPase, CDC48 subfamily protein K13525 VCP; transitional endoplasmic reticulum ATPase
D HacjB3_04495 AAA family ATPase, CDC48 subfamily protein K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C HacjB3_00660 GTP-binding protein K03595 era; GTPase
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D HacjB3_07790 nucleolar protein-like protein K14564 NOP56; nucleolar protein 56
D HacjB3_07795 fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D HacjB3_08675 rpl7ae; 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D HacjB3_08225 H/ACA RNA-protein complex component Gar1 K07569 gar1; RNA-binding protein
D HacjB3_12080 H/ACA RNA-protein complex component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C HacjB3_14475 transcription elongation factor NusA-like protein K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D HacjB3_08625 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
C 23S rRNA modification factors
D HacjB3_02010 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
C HacjB3_13260 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C HacjB3_14575 RimK domain protein ATP-grasp K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C HacjB3_08965 YcaO-like family domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
B rRNA processing factors
B rRNA helicases
B GTPases
C HacjB3_00660 GTP-binding protein K03595 era; GTPase
C HacjB3_09330 GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C HacjB3_00415 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C HacjB3_11245 hypothetical protein K07574 yhbY; RNA-binding protein
C HacjB3_05990 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C HacjB3_12280 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C HacjB3_13545 Predicted ribonuclease of the G/E family protein K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024