+F Repair protein KO #

  DNA Repair and Recombination Proteins - Halorubrum lacusprofundi

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Hlac_1270 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Hlac_0288 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Hlac_1437 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Hlac_2002 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Hlac_1517 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Hlac_0954 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Hlac_1044 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen E Hlac_1613 XPG I domain protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Hlac_1535 type III restriction protein res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E Hlac_0816 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E Hlac_2627 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Hlac_0097 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Hlac_1270 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Hlac_0288 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Hlac_1437 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Hlac_0379 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Hlac_1992 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Hlac_1742 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Hlac_2002 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Hlac_0954 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Hlac_1044 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Hlac_0531 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Hlac_0598 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Hlac_2607 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Hlac_2638 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Hlac_2725 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Hlac_0203 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Hlac_0119 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Hlac_2226 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Hlac_1501 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 E Hlac_2604 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Hlac_2227 MutL dimerisation K03572 mutL; DNA mismatch repair protein MutL E Hlac_0629 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Hlac_0203 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Hlac_1929 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Hlac_3321 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Hlac_3349 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Hlac_0181 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_2789 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_1592 AAA ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_0182 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_3129 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_2790 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_3236 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins E Hlac_2343 ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Hlac_3200 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Hlac_2344 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E Hlac_3327 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E Hlac_3578 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Hlac_2624 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E Hlac_1629 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E Hlac_2659 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E Hlac_0181 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_2789 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_1592 AAA ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E Hlac_0182 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_3129 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_2790 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_3236 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Hlac_2702 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E Hlac_1207 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Hlac_0994 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Hlac_0995 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Hlac_2506 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Hlac_0259 DNA topoisomerase type IA central domain protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Hlac_2572 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Hlac_2607 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Hlac_2638 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Hlac_2466 UMUC domain protein DNA-repair protein K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D Hlac_0442 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D Hlac_1253 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Hlac_0265 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Hlac_0097 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Hlac_2375 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Hlac_2944 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Hlac_2945 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Hlac_0310 Protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024