+F Repair protein KO
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DNA Repair and Recombination Proteins - Halorubrum lacusprofundi
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Hlac_1270 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Hlac_0288 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Hlac_1437 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Hlac_2002 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Hlac_1517 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E Hlac_0954 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E Hlac_1044 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen
E Hlac_1613 XPG I domain protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Hlac_1535 type III restriction protein res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Hlac_0816 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Hlac_2627 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E Hlac_0111 nucleic acid binding OB-fold tRNA/helicase-type K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D Hlac_2653 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Hlac_0097 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Hlac_1270 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Hlac_0288 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Hlac_1437 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Hlac_0379 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Hlac_1992 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Hlac_1742 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Hlac_2002 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Hlac_0954 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E Hlac_1044 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Hlac_0531 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E Hlac_0598 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Hlac_2607 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Hlac_2638 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E Hlac_2725 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E Hlac_0203 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Hlac_0119 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Hlac_2226 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Hlac_1501 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
E Hlac_2604 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Hlac_2227 MutL dimerisation K03572 mutL; DNA mismatch repair protein MutL
E Hlac_0629 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
E Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Hlac_0203 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Hlac_1929 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Hlac_3321 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Hlac_3349 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Hlac_0181 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_2789 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_1592 AAA ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_0182 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_3129 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_2790 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_3236 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
E Hlac_2343 ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Hlac_3200 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Hlac_2344 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E Hlac_3327 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
E Hlac_3578 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E Hlac_2624 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E Hlac_1629 DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB
E Hlac_2659 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
E Hlac_0181 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_2789 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_1592 AAA ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E Hlac_0182 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_3129 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_2790 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_3236 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E Hlac_2702 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
E Hlac_1207 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Hlac_0994 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Hlac_0995 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Hlac_2506 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F Hlac_0259 DNA topoisomerase type IA central domain protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Hlac_2572 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Hlac_2552 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Hlac_2645 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Hlac_2607 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Hlac_2638 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Hlac_2466 UMUC domain protein DNA-repair protein K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
D Hlac_0442 PHP domain protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D Hlac_1253 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Hlac_0265 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Hlac_0097 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Hlac_2375 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Hlac_2944 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Hlac_2945 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D Hlac_0310 Protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024