+F Repair protein KO #

  DNA Repair and Recombination Proteins - Hyphomicrobium sp. MC1

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HYPMC_1296 DNA photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HYPMC_0460 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HYPMC_4156 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HYPMC_4674 nth; endonuclease III; DNA glycosylase/apyrimidinic lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HYPMC_4430 nudG; NUDIX hydrolase (nudG), putative dihydroneopterin triphosphate pyrophosphatase (ntpA-like) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HYPMC_4747 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HYPMC_3803 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D HYPMC_1296 DNA photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HYPMC_1169 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HYPMC_2455 Uracil-DNA glycosylase superfamily protein (DNA replication, recombination and repair) (fragment) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HYPMC_4149 putative phage DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HYPMC_4713 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HYPMC_0460 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HYPMC_4156 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HYPMC_2971 tag; 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HYPMC_4947 mutM; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HYPMC_4674 nth; endonuclease III; DNA glycosylase/apyrimidinic lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HYPMC_2696 xthA; Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E HYPMC_2497 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HYPMC_0346 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HYPMC_3913 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HYPMC_1339 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E HYPMC_0965 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E HYPMC_2989 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E HYPMC_0352 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HYPMC_3913 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E HYPMC_0346 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HYPMC_2583 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HYPMC_2582 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HYPMC_2549 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HYPMC_1172 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HYPMC_1936 mfd; transcription repair coupling protein, ATP-dependent helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HYPMC_4786 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E HYPMC_3841 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HYPMC_3829 xseA; putative exonuclease VII, large subunit OB-fold nucleic acid binding domain K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HYPMC_2955 xseB; exodeoxyribonuclease VII small subunit (exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HYPMC_2877 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HYPMC_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HYPMC_3178 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E HYPMC_4541 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HYPMC_2030 AAA ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HYPMC_4563 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HYPMC_0633 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HYPMC_0346 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HYPMC_0352 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HYPMC_1346 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HYPMC_2022 putative Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HYPMC_1399 recA; recombinase A K03553 recA; recombination protein RecA E HYPMC_1004 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E HYPMC_1006 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HYPMC_1003 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HYPMC_4512 priA; Primosome factor N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E HYPMC_3349 Serine/threonine protein kinase K04067 priC; primosomal replication protein N'' D RecFOR pathway proteins E HYPMC_1399 recA; recombinase A K03553 recA; recombination protein RecA E HYPMC_2038 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HYPMC_0005 recF; putative RecF protein K03629 recF; DNA replication and repair protein RecF E HYPMC_1934 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HYPMC_2497 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HYPMC_1180 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HYPMC_0635 recR; recombination protein recR K06187 recR; recombination protein RecR E HYPMC_1004 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E HYPMC_1006 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HYPMC_1003 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E HYPMC_0554 Double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E HYPMC_0555 Double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E HYPMC_0887 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E HYPMC_2435 putative DNA repair protein Hden_1068 K10979 ku; DNA end-binding protein Ku E HYPMC_2434 DNA polymerase LigD, ligase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E HYPMC_2433 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HYPMC_1352 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HYPMC_0006 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HYPMC_1126 TopA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HYPMC_0038 Histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F HYPMC_2915 hupB; DNA-binding protein HU-beta (NS1) (HU-1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HYPMC_2497 recJ; putative single-strand DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HYPMC_1180 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HYPMC_0635 recR; recombination protein recR K06187 recR; recombination protein RecR F HYPMC_0346 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F HYPMC_2656 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F HYPMC_0542 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F HYPMC_3807 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HYPMC_1339 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F HYPMC_0965 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B F HYPMC_0891 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F HYPMC_3268 Trans-acting regulatory protein hvrA (modular protein) K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HYPMC_3535 dinB; DNA polymerase IV 2 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D HYPMC_1399 recA; recombinase A K03553 recA; recombination protein RecA D HYPMC_2855 lexA; SOS response transcriptional repressor, lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D HYPMC_2300 Transcriptional repressor (LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88] D HYPMC_3993 conserved protein of unknown function K14160 imuA; protein ImuA D HYPMC_3992 conserved protein of unknown function K14161 imuB; protein ImuB D HYPMC_3991 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D HYPMC_1346 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HYPMC_2022 putative Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HYPMC_0814 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HYPMC_4430 nudG; NUDIX hydrolase (nudG), putative dihydroneopterin triphosphate pyrophosphatase (ntpA-like) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HYPMC_4747 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HYPMC_4069 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HYPMC_2785 nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024