+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Hyphomonas neptunium

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D HNE_0877 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C HNE_0878 era; GTP-binding protein Era K03595 era; GTPase C HNE_2562 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C HNE_0503 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C HNE_0112 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C HNE_2054 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C HNE_2000 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D HNE_0755 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D HNE_2152 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D HNE_1806 NOL1/NOP2/sun domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D HNE_3368 putative ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D HNE_0756 putative methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D HNE_2778 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D HNE_1369 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D HNE_3562 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D HNE_3032 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D HNE_0763 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D HNE_0818 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D HNE_2686 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D HNE_1802 putative ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D HNE_0304 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D HNE_2871 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D HNE_2091 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D HNE_3331 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D HNE_0818 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D HNE_2781 putative 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D HNE_0406 RNA pseudouridine synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D HNE_0940 pseudouridine synthase rsuA family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D HNE_1002 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D HNE_2640 pseudouridine synthase family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D HNE_3500 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D HNE_1378 RNA pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D HNE_1844 Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C HNE_0526 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C HNE_3114 alpha-L-glutamate ligases, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C HNE_0041 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C HNE_1951 RNA modification enzyme, MiaB family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C HNE_0379 putative ribosomal protein L11 methyltransferase PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C HNE_0877 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C HNE_0673 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C HNE_1732 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] C HNE_2300 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C HNE_0553 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C HNE_0878 era; GTP-binding protein Era K03595 era; GTPase C HNE_0774 engA; GTP-binding protein EngA K03977 engA; GTPase C HNE_2562 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] C HNE_2005 putative GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C HNE_1848 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C HNE_0873 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C HNE_0115 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C HNE_0111 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C HNE_0303 iojap homolog K09710 ybeB; ribosome-associated protein C HNE_0105 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor C HNE_3290 conserved hypothetical protein K05808 hpf; ribosome hibernation promoting factor C HNE_1924 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024