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Transcription Machinery - Hemiscyllium ocellatum (epaulette shark)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 132835136 polr2a; DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 132833401 polr2b; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 132823823 polr2c; DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 132830463 polr2j; DNA-directed RNA polymerase II subunit RPB11-a K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 132821632 polr2d; DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 132836364 polr2g; DNA-directed RNA polymerase II subunit RPB7 isoform X1 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 132836569 polr2i; DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
E 132834173 polr2m; protein GRINL1A K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A
D Pol I, II, III common subunits
E 132829175 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 132831244 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 132821875 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 132815390 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 132831352 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 132818420 gtf2a1; transcription initiation factor IIA subunit 1 isoform X1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 132834783 gtf2a2; transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 132818843 gtf2b; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 132831977 tbpl1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132833775 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132817899 TATA-box-binding protein-like K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132820522 taf1; transcription initiation factor TFIID subunit 1 isoform X1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 132811674 taf2; transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 132826651 taf3; transcription initiation factor TFIID subunit 3 isoform X1 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 132822783 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132823623 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132815118 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132819505 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 132826332 taf5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 132836324 taf6l; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 132835131 taf6; transcription initiation factor TFIID subunit 6 isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 132820183 taf7; transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 132828161 taf8; transcription initiation factor TFIID subunit 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 132820213 taf9; transcription initiation factor TFIID subunit 9 K14535 TAF9; transcription initiation factor TFIID subunit 9
E 132833727 taf10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 132828217 taf11; transcription initiation factor TFIID subunit 11 isoform X1 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 132829912 taf12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 132820795 taf13; transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 132830368 TATA-binding protein-associated factor 2N-like isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 132814359 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 132821090 gtf2e1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 132833325 gtf2e2; transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E 132836033 gtf2f1; general transcription factor IIF subunit 1 K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E 132820954 gtf2f2a; general transcription factor IIF subunit 2 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 132824171 gtf2h1; general transcription factor IIH subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 132827257 gtf2h2; general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 132826997 gtf2h3; general transcription factor IIH subunit 3 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 132817694 ercc3; general transcription and DNA repair factor IIH helicase subunit XPB K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 132836805 ercc2; general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 132819464 gtf2h5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 132827050 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 132817965 mnat1; CDK-activating kinase assembly factor MAT1 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 132827447 ccnh; cyclin-H K06634 CCNH; cyclin H
C Mediator complex
D Head
E 132817832 med6; mediator of RNA polymerase II transcription subunit 6 isoform X1 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 132819149 med8; mediator of RNA polymerase II transcription subunit 8 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 132835155 med11; mediator of RNA polymerase II transcription subunit 11 K15131 MED11; mediator of RNA polymerase II transcription subunit 11
E 132816686 med17; mediator of RNA polymerase II transcription subunit 17 isoform X1 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 132829964 med18; mediator of RNA polymerase II transcription subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 132808832 med19b; mediator of RNA polymerase II transcription subunit 19-B K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 132828157 med20; mediator of RNA polymerase II transcription subunit 20 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 132825967 med22; mediator of RNA polymerase II transcription subunit 22 isoform X1 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 132819782 med28; mediator of RNA polymerase II transcription subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 132836668 med29; mediator of RNA polymerase II transcription subunit 29 K15142 MED29; mediator of RNA polymerase II transcription subunit 29
E 132829970 mediator of RNA polymerase II transcription subunit 30-like K15143 MED30; mediator of RNA polymerase II transcription subunit 30
E 132815323 med30; mediator of RNA polymerase II transcription subunit 30 isoform X1 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 132830898 med1; mediator of RNA polymerase II transcription subunit 1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 132820684 med4; mediator of RNA polymerase II transcription subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 132823283 med7; mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 132825275 med9; mediator of RNA polymerase II transcription subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 132815954 med10; mediator of RNA polymerase II transcription subunit 10 isoform X1 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 132824613 med21; mediator of RNA polymerase II transcription subunit 21 isoform X1 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 132830352 med31; mediator of RNA polymerase II transcription subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 132821048 med14; mediator of RNA polymerase II transcription subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 132827420 med15; mediator of RNA polymerase II transcription subunit 15 isoform X1 K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 132828832 med16; mediator of RNA polymerase II transcription subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 132836802 cdk19; cyclin-dependent kinase 19 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 132816793 cdk8; cyclin-dependent kinase 8 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 132832287 ccnc; cyclin-C isoform X1 K15161 CCNC; cyclin-C
E 132820530 med12; mediator of RNA polymerase II transcription subunit 12 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 132821781 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 132827162 mediator of RNA polymerase II transcription subunit 13-like isoform X1 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 132830319 med13a; mediator of RNA polymerase II transcription subunit 13a isoform X1 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 132832991 med23; mediator of RNA polymerase II transcription subunit 23 isoform X1 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 132830818 med24; mediator of RNA polymerase II transcription subunit 24 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 132831382 med25; mediator of RNA polymerase II transcription subunit 25 isoform X1 K15168 MED25; mediator of RNA polymerase II transcription subunit 25
E 132828893 crsp7; mediator of RNA polymerase II transcription subunit 26 isoform X1 K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E 132825880 med27; mediator of RNA polymerase II transcription subunit 27 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 132831047 kat2a; histone acetyltransferase KAT2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 132815755 kat2b; histone acetyltransferase KAT2B isoform X1 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 132825372 trrap; transformation/transcription domain-associated protein isoform X1 K08874 TRRAP; transformation/transcription domain-associated protein
E 132833261 supt3h; transcription initiation protein SPT3 homolog isoform X1 K11313 SUPT3H; transcription initiation protein SPT3
E 132830351 tada2a; transcriptional adapter 2-alpha isoform X1 K11314 TADA2A; transcriptional adapter 2-alpha
E 132816845 tada2b; transcriptional adapter 2-beta K15127 TADA2B; transcriptional adapter 2-beta
E 132822283 tada3l; transcriptional adapter 3 isoform X1 K11315 TADA3; transcriptional adapter 3
E 132818659 tada1; transcriptional adapter 1 isoform X1 K11317 TADA1; transcriptional adapter 1
E 132811674 taf2; transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 132822783 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132823623 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132815118 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 132819505 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 132826332 taf5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 132836324 taf6l; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 132835131 taf6; transcription initiation factor TFIID subunit 6 isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 132820183 taf7; transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 132820213 taf9; transcription initiation factor TFIID subunit 9 K14535 TAF9; transcription initiation factor TFIID subunit 9
E 132833727 taf10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 132829912 taf12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 132830860 ataxin-7-like protein 3 isoform X1 K11363 SGF11; SAGA-associated factor 11
E 132831132 supt7l; STAGA complex 65 subunit gamma K11316 SUPT7L; STAGA complex 65 subunit gamma
E 132822361 ataxin-7 isoform X1 K11318 ATXN7; ataxin-7
E 132824986 ataxin-7-like protein 1 isoform X1 K11318 ATXN7; ataxin-7
E 132828276 ataxin-7-like protein 1 K11318 ATXN7; ataxin-7
E 132823291 chd1; chromodomain-helicase-DNA-binding protein 1 isoform X1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 132815354 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 132825465 usp22; ubiquitin carboxyl-terminal hydrolase 22 isoform X1 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 132824027 sf3b3; splicing factor 3B subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 132836038 smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 132825681 probable global transcription activator SNF2L2 isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 132834491 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 132827426 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 132805832 SWI/SNF complex subunit SMARCC2-like isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 132815043 smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 132830938 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 132805728 smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 132815258 smarcd3a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 132830862 smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 132815054 actin, cytoplasmic type 5-like isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 132815056 actin, cytoplasmic type 5-like isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 132815057 actin-3-like K05692 ACTB_G1; actin beta/gamma 1
E 132815131 actin, non-muscle 6.2-like K05692 ACTB_G1; actin beta/gamma 1
E 132815132 actin, non-muscle 6.2 K05692 ACTB_G1; actin beta/gamma 1
E 132815133 actin, non-muscle 6.2-like K05692 ACTB_G1; actin beta/gamma 1
E 132825506 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 132828025 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1
E 132821882 actl6a; actin-like protein 6A K11340 ACTL6A; actin-like protein 6A
E 132835217 actin-like protein 6B K11652 ACTL6B; actin-like protein 6B
E 132830149 AT-rich interactive domain-containing protein 1A-like isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 132819798 arid1b; AT-rich interactive domain-containing protein 1B isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 132824847 arid2; AT-rich interactive domain-containing protein 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 132828454 AT-rich interactive domain-containing protein 2-like K11765 ARID2; AT-rich interactive domain-containing protein 2
E 132822287 pbrm1; protein polybromo-1 isoform X1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 132834491 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 132827426 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 132836018 sub1a; SUB1 regulator of transcription a K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 132836989 cell division cycle and apoptosis regulator protein 1-like isoform X1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
E 132826174 ccar1; cell division cycle and apoptosis regulator protein 1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
C Other transcription-related factors
D Transcription elongation factors
E 132829836 tcea3; transcription elongation factor A protein 3 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 132822758 tcea2; transcription elongation factor A protein 2 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 132815419 tcea1; transcription elongation factor A protein 1 K03145 TFIIS; transcription elongation factor S-II
E 132830337 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 132836797 supt5h; LOW QUALITY PROTEIN: transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
E 132830601 supt6h; transcription elongation factor SPT6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 132821077 ttf2; transcription termination factor 2 isoform X1 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 132816426 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 132815887 cpsf1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 132807751 cpsf3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 132825509 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 132827964 cleavage and polyadenylation specificity factor subunit 4-like K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 132827119 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 132831101 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 132836700 sympk; symplekin K06100 SYMPK; symplekin
E 132833542 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 132819874 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 132825397 dxo; decapping and exoribonuclease protein K14845 RAI1; RAT1-interacting protein
E 132832143 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 K15559 RTT103; regulator of Ty1 transposition protein 103
E 132822901 rprd1b; regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1 K15559 RTT103; regulator of Ty1 transposition protein 103
E 132830118 splicing factor, proline- and glutamine-rich-like K13219 SFPQ; splicing factor, proline- and glutamine-rich
E 132819797 scaf8; SR-related and CTD-associated factor 8 isoform X1 K13191 RBM16; RNA-binding protein 16
E 132821027 scaf4a; SR-related and CTD-associated factor 4 isoform X1 K13167 SCAF4; SR-related and CTD-associated factor 4
E 132825878 setx; probable helicase senataxin isoform X1 K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 132835850 pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 132836784 paf1; RNA polymerase II-associated factor 1 homolog K15174 PAF1; RNA polymerase II-associated factor 1
E 132818980 cdc73; parafibromin K15175 CDC73; parafibromin
E 132824462 ctr9; RNA polymerase-associated protein CTR9 homolog K15176 CTR9; RNA polymerase-associated protein CTR9
E 132834142 leo1; RNA polymerase-associated protein LEO1 K15177 LEO1; RNA polymerase-associated protein LEO1
E 132818071 rtf1; RNA polymerase-associated protein RTF1 homolog K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 132818113 nelfa; negative elongation factor A K15179 WHSC2; negative elongation factor A
E 132825655 nelfb; negative elongation factor B K15180 COBRA1; negative elongation factor B
E 132822879 nelfcd; negative elongation factor C/D isoform X1 K15181 TH1L; negative elongation factor C/D
E 132832743 nelfe; negative elongation factor E K15182 RDBP; negative elongation factor E
D Super elongation complex (SEC)
E 132834259 RNA polymerase II elongation factor ELL isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 132827665 ell2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 132828988 ell; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 132816400 AF4/FMR2 family member 1-like isoform X1 K15184 AFF1; AF4/FMR2 family member 1
E 132823450 aff4; AF4/FMR2 family member 4 isoform X1 K15185 AFF4; AF4/FMR2 family member 4
E 132832182 eaf1; ELL-associated factor 1 K15186 EAF; ELL-associated factor
E 132817386 eaf2; ELL-associated factor 2 K15186 EAF; ELL-associated factor
E 132828817 protein ENL-like K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 132829366 mllt3; protein AF-9 isoform X1 K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 132817055 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 132825708 cdk9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E 132834259 RNA polymerase II elongation factor ELL isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 132827665 ell2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 132828988 ell; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 132815627 ice1; little elongation complex subunit 1 K26143 ICE1; little elongation complex subunit 1
E 132834834 ice2; little elongation complex subunit 2 isoform X1 K26144 ICE2; little elongation complex subunit 2
D Brd4/P-TEFb complex
E 132835917 brd4; bromodomain-containing protein 4 isoform X1 K11722 BRD4; bromodomain-containing protein 4
E 132817055 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 132825708 cdk9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 132830795 protein HEXIM1-like K15189 HEXIM1_2; protein HEXIM1/2
E 132830806 protein HEXIM1-like K15189 HEXIM1_2; protein HEXIM1/2
E 132835159 7SK snRNA methylphosphate capping enzyme-like K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 132816695 larp7; la-related protein 7 K15191 LARP7; La-related protein 7
E 132817055 cyclin-T2-like isoform X1 K15188 CCNT; cyclin T
E 132825708 cdk9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
E 132819176 znf326; DBIRD complex subunit ZNF326 K13204 ZNF326; zinc finger protein 326
D Others
E 132830462 general transcription factor II-I-like isoform X1 K03121 TFII-I; transcription initiation factor TFII-I
E 132830253 gtf2ird1; general transcription factor II-I repeat domain-containing protein 1 isoform X1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 132826237 btaf1; TATA-binding protein-associated factor 172 isoform X1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 132835988 protein Dr1-like K21751 DR1; down-regulator of transcription 1
E 132818833 dr1; protein Dr1 K21751 DR1; down-regulator of transcription 1
E 132836099 drap1; dr1-associated corepressor K21752 DRAP1; Dr1-associated corepressor
E 132824181 spty2d1; protein SPT2 homolog K15193 SPTY2D1; protein SPT2
E 132820358 aff2; AF4/FMR2 family member 2 isoform X1 K15194 AFF2; AF4/FMR2 family member 2
E 132816728 aff3; AF4/FMR2 family member 3 isoform X1 K15195 AFF3; AF4/FMR2 family member 3
E 132813347 ctdp1; RNA polymerase II subunit A C-terminal domain phosphatase K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 132817703 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 132815870 ctdspla; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 132821937 protein IWS1 homolog isoform X1 K17498 SPN1; transcription factor SPN1
E 132805858 cysteine/serine-rich nuclear protein 2-like isoform X1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 132815064 csrnp1b; cysteine/serine-rich nuclear protein 1b K17494 CSRNP; cysteine/serine-rich nuclear protein
E 132817434 csrnp3; cysteine/serine-rich nuclear protein 3 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 132817821 rpap1; RNA polymerase II-associated protein 1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 132818837 rpap2; putative RNA polymerase II subunit B1 CTD phosphatase rpap2 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 132824622 rpap3; RNA polymerase II-associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 132818395 ccnk; cyclin-K isoform X1 K23326 CCNK; cyclin K
E 132827120 gpn3; GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
E 132829886 gpn2; GPN-loop GTPase 2 K24104 GPN; GPN-loop GTPase
E 132819286 gpn1; GPN-loop GTPase 1 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 132835000 polr3a; DNA-directed RNA polymerase III subunit RPC1 isoform X1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 132824878 polr3b; DNA-directed RNA polymerase III subunit RPC2 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 132836265 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 132820233 polr1d; DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 132805645 polr3c; DNA-directed RNA polymerase III subunit RPC3 isoform X1 K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E 132836956 polr3d; DNA-directed RNA polymerase III subunit RPC4 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 132825176 polr3e; DNA-directed RNA polymerase III subunit RPC5 K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 132819828 polr3f; DNA-directed RNA polymerase III subunit RPC6 K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 132827509 polr3g; DNA-directed RNA polymerase III subunit RPC7 K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 132831225 polr3h; DNA-directed RNA polymerase III subunit RPC8 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 132830392 crcp; DNA-directed RNA polymerase III subunit RPC9 K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 132825537 polr3k; DNA-directed RNA polymerase III subunit RPC10 K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 132829175 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 132831244 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 132821875 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 132815390 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 132831352 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 132830949 P43 5S RNA-binding protein-like K09191 GTF3A; general transcription factor IIIA
E 132816477 gtf3ab; general transcription factor IIIA, b K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 132831977 tbpl1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132833775 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132817899 TATA-box-binding protein-like K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132818439 brf1b; BRF1 RNA polymerase III transcription initiation factor subunit b K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 132837009 transcription factor IIIB 50 kDa subunit-like K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 132822870 transcription factor TFIIIB component B'' homolog K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 132825355 general transcription factor 3C polypeptide 1-like isoform X1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 132833463 gtf3c2; general transcription factor 3C polypeptide 2 isoform X1 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 132817525 gtf3c3; general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 132825702 gtf3c4; general transcription factor 3C polypeptide 4 isoform X1 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 132825946 gtf3c5; general transcription factor 3C polypeptide 5 isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 132826865 gtf3c6; general transcription factor 3C polypeptide 6 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 132825946 gtf3c5; general transcription factor 3C polypeptide 5 isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 132817525 gtf3c3; general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 132817969 snapc1b; snRNA-activating protein complex subunit 1b K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 132835180 snapc2; snRNA-activating protein complex subunit 2 isoform X1 K15209 SNAPC2; snRNA-activating protein complex subunit 2
E 132825276 snapc3; snRNA-activating protein complex subunit 3 isoform X1 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 132825954 snapc4; snRNA-activating protein complex subunit 4 isoform X1 K09453 SNAPC4; snRNA-activating protein complex subunit 4
E 132834261 snapc5; snRNA-activating protein complex subunit 5 K15211 SNAPC5; snRNA-activating protein complex subunit 5
D Octamer transcription factors
E 132814163 POU domain, class 2, transcription factor 2-like K09364 POU2F; POU domain transcription factor, class 2
E 132820801 POU domain, class 2, transcription factor 1-like isoform X1 K09364 POU2F; POU domain transcription factor, class 2
E 132829474 pou2f3; POU domain, class 2, transcription factor 3 isoform X1 K09364 POU2F; POU domain transcription factor, class 2
E 132832927 POU domain, class 5, transcription factor 3-like K09367 POU5F; POU domain transcription factor, class 5
E 132825636 POU domain, class 5, transcription factor 3-like K09367 POU5F; POU domain transcription factor, class 5
D Others
E 132824429 znf143b; zinc finger protein 143 isoform X1 K20828 ZNF143_76; zinc finger protein 143/76
E 132828215 zinc finger protein 76-like K20828 ZNF143_76; zinc finger protein 143/76
E 132815897 repressor of RNA polymerase III transcription MAF1 homolog K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 132827116 polr1a; DNA-directed RNA polymerase I subunit RPA1 isoform X1 K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 132831021 polr1b; DNA-directed RNA polymerase I subunit RPA2 isoform X1 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 132836265 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 132820233 polr1d; DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 132825412 polr1e; DNA-directed RNA polymerase I subunit RPA49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 132816013 polr1f; DNA-directed RNA polymerase I subunit RPA43 K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 132836738 polr1g; CD3e molecule, epsilon associated protein K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34
E 132832483 polr1h; DNA-directed RNA polymerase I subunit RPA12 K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E 132829175 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 132831244 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 132821875 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 132815390 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 132831352 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 132831977 tbpl1; TATA box-binding protein-like 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132833775 tbp; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132817899 TATA-box-binding protein-like K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 132819427 taf1a; TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1 K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
E 132834427 taf1b; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1 K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 132818665 taf1c; TATA box-binding protein-associated factor, RNA polymerase I, subunit C K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 132830523 TATA box-binding protein-associated factor RNA polymerase I subunit D-like K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 132830992 nucleolar transcription factor 1-like isoform X1 K09273 UBTF; upstream-binding transcription factor
E 132815146 nucleolar transcription factor 1-like isoform X1 K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 132825115 rrn3; RNA polymerase I-specific transcription initiation factor RRN3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 132830337 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 132836797 supt5h; LOW QUALITY PROTEIN: transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E 132833227 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 132805730 bromodomain adjacent to zinc finger domain protein 2B-like K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A
D CTDK-I complex
D Transcription termination factors
E 132830854 cavin1b; caveolae-associated protein 1b K19387 PTRF; polymerase I and transcript release factor
D Others
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 132818843 gtf2b; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 132814359 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 132821090 gtf2e1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024