+D
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Transfer RNA Biogenesis - Vreelandella olivaria
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D HORIV_51520 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D HORIV_18660 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D HORIV_29250 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D HORIV_29260 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D HORIV_58450 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D HORIV_38710 hypothetical protein K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D HORIV_30640 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D HORIV_33680 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D HORIV_55520 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D HORIV_06560 hypothetical protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D HORIV_36850 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D HORIV_11040 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D HORIV_44280 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D HORIV_33700 hypothetical protein K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D HORIV_07890 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D HORIV_09370 hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D HORIV_33480 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D HORIV_33510 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D HORIV_05200 tyrS2; tyrosine--tRNA ligase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D HORIV_58320 hypothetical protein K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D HORIV_69720 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D HORIV_45360 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D HORIV_69410 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D HORIV_56080 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D HORIV_31710 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D HORIV_31720 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D HORIV_04810 hypothetical protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D HORIV_51870 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D HORIV_09480 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D HORIV_09240 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D HORIV_25440 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D HORIV_73710 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D HORIV_57280 hypothetical protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D HORIV_58570 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D HORIV_73740 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D HORIV_72790 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D HORIV_18880 rnb; exoribonuclease 2 K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D HORIV_43770 hypothetical protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
D HORIV_51520 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D HORIV_45330 hypothetical protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D HORIV_38710 hypothetical protein K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D HORIV_29250 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D HORIV_29260 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D HORIV_05200 tyrS2; tyrosine--tRNA ligase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D HORIV_58320 hypothetical protein K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D HORIV_58450 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D HORIV_06560 hypothetical protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D HORIV_11040 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D HORIV_07890 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D HORIV_30640 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D HORIV_44280 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D HORIV_36850 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D HORIV_00140 hypothetical protein K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D HORIV_00120 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D HORIV_33700 hypothetical protein K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D HORIV_18660 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D HORIV_33680 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D HORIV_55520 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D HORIV_33480 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D HORIV_33510 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D HORIV_09370 hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D HORIV_04990 hypothetical protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D HORIV_69720 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D HORIV_49820 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D HORIV_55420 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D HORIV_18600 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D HORIV_30140 hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D HORIV_11090 dusC; tRNA-dihydrouridine(16) synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
D HORIV_48100 hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D HORIV_24410 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D HORIV_24400 cmoB; tRNA U34 carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D HORIV_24200 cmoM; tRNA 5-carboxymethoxyuridine methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D HORIV_19820 hypothetical protein K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D HORIV_69410 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D HORIV_56080 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D HORIV_06310 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D HORIV_73710 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D HORIV_09510 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D HORIV_72980 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
C Psudouridine synthases
D HORIV_31710 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D HORIV_31720 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D HORIV_04810 hypothetical protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D HORIV_08340 hypothetical protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D HORIV_51870 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D HORIV_19560 hypothetical protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D HORIV_54740 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D HORIV_43100 tusA; sulfurtransferase TusD K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D HORIV_55210 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D HORIV_35890 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D HORIV_35880 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D HORIV_35870 tusD; sulfurtransferase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D HORIV_35900 hypothetical protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D HORIV_09460 iscA; iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D HORIV_09480 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D HORIV_37080 tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D HORIV_25440 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D HORIV_32640 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D HORIV_11380 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D HORIV_09610 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D HORIV_17660 ptpS; hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D HORIV_32710 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D HORIV_20230 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D HORIV_25340 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D HORIV_57280 hypothetical protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D HORIV_57270 hypothetical protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D HORIV_09600 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D HORIV_07480 hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D HORIV_54990 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D HORIV_55000 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D HORIV_09240 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D HORIV_51480 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D HORIV_25370 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D HORIV_08370 ygdL; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C HORIV_45820 hypothetical protein K12573 rnr; ribonuclease R [EC:3.1.13.1]
C HORIV_04830 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C HORIV_16320 vapC_2; tRNA(fMet)-specific endonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024