+F Repair protein KO #

  DNA Repair and Recombination Proteins - Vreelandella olivaria

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HORIV_62770 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HORIV_32320 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HORIV_10400 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HORIV_57130 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HORIV_26790 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_26800 thiamine phosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_62160 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_27650 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_40190 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_06790 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HORIV_39930 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D HORIV_62770 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D HORIV_45670 deoxyribodipyrimidine photo-lyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E HORIV_32320 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HORIV_61570 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HORIV_72410 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HORIV_10400 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HORIV_57130 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HORIV_61540 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HORIV_06850 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HORIV_37010 hypothetical protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E HORIV_37020 hypothetical protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HORIV_72950 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HORIV_27760 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HORIV_29300 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E HORIV_16080 hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E HORIV_06400 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HORIV_05470 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E HORIV_37030 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E HORIV_71750 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HORIV_05470 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HORIV_02360 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HORIV_02370 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HORIV_02380 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HORIV_02720 hypothetical protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HORIV_72300 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HORIV_38950 hypothetical protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HORIV_10930 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS E HORIV_10940 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E HORIV_25410 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL E HORIV_25430 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HORIV_06130 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E HORIV_11730 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HORIV_68510 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HORIV_07350 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HORIV_00040 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HORIV_07920 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E HORIV_27300 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HORIV_34540 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HORIV_54750 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HORIV_30460 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HORIV_34650 DNA polymerase/helicase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HORIV_51170 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HORIV_43820 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HORIV_05470 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HORIV_71750 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HORIV_01780 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HORIV_46640 hypothetical protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E HORIV_46580 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E HORIV_46700 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E HORIV_10980 hypothetical protein K03553 recA; recombination protein RecA E HORIV_36830 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HORIV_36800 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HORIV_36840 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HORIV_06130 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E HORIV_50200 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E HORIV_50230 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HORIV_10980 hypothetical protein K03553 recA; recombination protein RecA E HORIV_00050 hypothetical protein K03629 recF; DNA replication and repair protein RecF E HORIV_10000 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HORIV_72190 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HORIV_07910 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HORIV_06400 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HORIV_27980 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HORIV_43780 recR; recombination protein RecR K06187 recR; recombination protein RecR E HORIV_04480 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) E HORIV_30700 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E HORIV_36830 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HORIV_36800 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HORIV_36840 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E HORIV_61680 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E HORIV_61690 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E HORIV_55320 hypothetical protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E HORIV_50200 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E HORIV_50230 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HORIV_30720 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HORIV_00090 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HORIV_39040 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HORIV_72030 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F HORIV_33620 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HORIV_06400 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HORIV_27980 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HORIV_43780 recR; recombination protein RecR K06187 recR; recombination protein RecR F HORIV_05470 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F HORIV_30130 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F HORIV_44020 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F HORIV_06130 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F HORIV_08550 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HORIV_60100 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HORIV_37030 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HORIV_10430 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HORIV_35450 hypothetical protein K03502 umuC; DNA polymerase V D HORIV_35470 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D HORIV_10980 hypothetical protein K03553 recA; recombination protein RecA D HORIV_11160 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D HORIV_32460 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D HORIV_04480 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) D HORIV_01780 hypothetical protein K03111 ssb; single-strand DNA-binding protein D HORIV_11010 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D HORIV_26790 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_26800 thiamine phosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_62160 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_27650 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_40190 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HORIV_06790 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HORIV_01650 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HORIV_27570 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HORIV_27600 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024