+E Transcription factors KO #

  Transcription Factors - Hafnia paralvei

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AL518_19825 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D AL518_07385 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AL518_14650 arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D AL518_09700 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D AL518_19240 HTH-type transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D AL518_19245 HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D AL518_11910 hypothetical protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D AL518_05475 AraC family transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D AL518_16850 AraC family transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D AL518_00745 AraC family transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D AL518_16270 hypothetical protein K11920 envY; AraC family transcriptional regulator D AL518_07895 MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D AL518_19330 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D AL518_13995 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D AL518_07325 transcriptional regulator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D AL518_16310 hypothetical protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator D AL518_09815 DNA-3-methyladenine glycosylase 2 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D AL518_19205 transcriptional regulator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D AL518_08875 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AL518_03960 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D AL518_03620 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D AL518_08110 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D AL518_04075 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AL518_01235 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D AL518_08410 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D AL518_06985 HTH-type transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D AL518_14555 transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D AL518_14120 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AL518_05045 DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D AL518_05715 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D AL518_11205 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D AL518_07365 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D AL518_06860 HTH-type transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D AL518_14485 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D AL518_07205 LysR family transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D AL518_04005 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D AL518_17725 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D AL518_05190 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D AL518_00395 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D AL518_02740 HTH domain-containing protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D AL518_20115 DeoR/GlpR transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D AL518_05870 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D AL518_02790 DeoR/GlpR transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D AL518_00845 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_04870 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_05295 xylose operon transcription regulator XylR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_09540 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_18115 HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_15910 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AL518_04515 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D AL518_04135 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D AL518_08430 catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D AL518_06505 treR; HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D AL518_14440 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D AL518_03675 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D AL518_07505 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D AL518_14695 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D AL518_01830 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D AL518_10350 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AL518_00110 UTRA domain-containing protein K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D AL518_03130 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AL518_13370 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D AL518_08600 pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AL518_17930 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D AL518_01465 transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D AL518_19315 transcriptional regulator LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D AL518_04625 FadR family transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D AL518_06745 FadR family transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D AL518_08075 transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D AL518_13290 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AL518_18525 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AL518_08055 FCD domain-containing protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D AL518_10540 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor C TetR/AcrR family D AL518_10195 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D AL518_04405 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D AL518_02940 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AL518_04065 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D AL518_11870 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D AL518_04820 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AL518_17500 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AL518_10125 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D AL518_17095 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D AL518_13040 transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D AL518_05255 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D AL518_14510 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D AL518_00055 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D AL518_11585 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D AL518_10330 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D AL518_06390 Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D AL518_18975 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AL518_02950 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D AL518_03100 acetate operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AL518_13880 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D AL518_07395 IclR family transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D AL518_06105 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AL518_09615 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D AL518_14725 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D AL518_00290 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D AL518_16720 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D AL518_02245 HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family D AL518_13280 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D AL518_15955 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AL518_03420 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AL518_06755 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AL518_07880 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D AL518_02080 transcriptional regulator K07724 ner; Ner family transcriptional regulator D AL518_08360 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D AL518_07840 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D AL518_05200 YgiT-type zinc finger protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D AL518_18050 cupin domain-containing protein K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D AL518_11345 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AL518_17890 sigma-54-dependent transcriptional regulator K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator D AL518_00955 formate hydrogenlyase transcriptional activator FlhA K15836 fhlA; formate hydrogenlyase transcriptional activator D AL518_11070 Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D AL518_05105 XRE family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D AL518_07030 sigma-54-dependent Fis family transcriptional regulator K06714 rocR; arginine utilization regulatory protein D AL518_18620 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D AL518_09790 transporter K02019 modE; molybdate transport system regulatory protein D AL518_20960 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D AL518_02870 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D AL518_05270 met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D AL518_13015 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AL518_20145 transcriptional repressor RcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D AL518_10065 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AL518_03500 transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D AL518_16635 transcription termination factor NusG K05785 rfaH; transcriptional antiterminator RfaH D AL518_02090 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D AL518_19015 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D AL518_14860 ROK family transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D AL518_04570 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor D AL518_13780 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D AL518_09040 transcriptional regulator CadC K03765 cadC; transcriptional activator of cad operon D AL518_10805 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D AL518_19660 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AL518_13725 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D AL518_13740 envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D AL518_03210 sigma-54-dependent Fis family transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon D AL518_07555 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D AL518_09425 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D AL518_02435 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D AL518_07255 CaiF/GrlA family transcriptional regulator K08277 caiF; transcriptional activator CaiF D AL518_08690 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D AL518_09910 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D AL518_09255 Crl family RNA polymerase assembly factor K11926 crl; sigma factor-binding protein Crl D AL518_08370 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR D AL518_11970 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D AL518_08440 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0